From be5cdc1c4a9e236ec4351f1cd72cb6e4b7f79fc4 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 7 Sep 2026 16:32:18 +0000
Subject: [PATCH 1/2] [pre-commit.ci] pre-commit autoupdate
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Content-Type: text/plain; charset=UTF-8
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updates:
- [github.com/astral-sh/ruff-pre-commit: v0.16.2 → v0.16.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.16.2...v0.16.6)
- [github.com/PyCQA/bandit: 1.7.9 → 1.9.4](https://github.com/PyCQA/bandit/compare/1.7.9...1.9.4)
---
 .pre-commit-config.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index af3eb03..ef5cccc 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -33,7 +33,7 @@ repos:
 
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.16.2
+  rev: v0.16.6
   hooks:
     # Run the linter.
     - id: ruff-check
@@ -55,7 +55,7 @@ repos:
 #   - id: codespell
 
 - repo: https://github.com/PyCQA/bandit
-  rev: 1.7.9
+  rev: 1.9.4
   hooks:
     - id: bandit
       args: ["-c", "pyproject.toml"]

From 150d2416da38ce1d29e0b0a680d63820fb8c2217 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 7 Sep 2026 16:34:18 +0000
Subject: [PATCH 2/2] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 README.md | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/README.md b/README.md
index a69c894..3eaf57d 100644
--- a/README.md
+++ b/README.md
@@ -28,6 +28,7 @@ that would otherwise have to implement these methods individually.
 
 ```python
 import biocutils
+
 biocutils.match(["A", "C", "E"], ["A", "B", "C", "D", "E"])
 ## [0, 2, 4]
 ```
@@ -36,6 +37,7 @@ biocutils.match(["A", "C", "E"], ["A", "B", "C", "D", "E"])
 
 ```python
 import biocutils
+
 biocutils.factorize(["A", "B", "B", "A", "C", "D", "C", "D"])
 ## (['A', 'B', 'C', 'D'], [0, 1, 1, 0, 2, 3, 2, 3])
 ```
@@ -44,6 +46,7 @@ biocutils.factorize(["A", "B", "B", "A", "C", "D", "C", "D"])
 
 ```python
 import biocutils
+
 biocutils.intersect(["A", "B", "C", "D"], ["D", "A", "E"])
 ## ['A', 'D']
 ```
@@ -52,6 +55,7 @@ biocutils.intersect(["A", "B", "C", "D"], ["D", "A", "E"])
 
 ```python
 import biocutils
+
 biocutils.union(["A", "B", "C", "D"], ["D", "A", "E"])
 ## ['A', 'B', 'C', 'D', 'E']
 ```
@@ -60,10 +64,12 @@ biocutils.union(["A", "B", "C", "D"], ["D", "A", "E"])
 
 ```python
 import biocutils
+
 biocutils.subset(["A", "B", "C", "D", "E"], [0, 2, 4])
 ## ['A', 'C', 'E']
 
 import numpy as np
+
 y = np.array([10, 20, 30, 40, 50])
 biocutils.subset(y, [0, 2, 4])
 ## array([10, 30, 50])