We should develop code to support the differential methylation analysis using the DSS package directly on methrix (without conversion to bsseq).
I started a new branch, called DSS_support, where I have already submitted code to work with in-memory objects. Optimizing scripts for HDF5 objects still needs to be done.
Eventually, we can send a push notification to DSS, or build it into the methrix itself.
We should develop code to support the differential methylation analysis using the DSS package directly on methrix (without conversion to bsseq).
I started a new branch, called DSS_support, where I have already submitted code to work with in-memory objects. Optimizing scripts for HDF5 objects still needs to be done.
Eventually, we can send a push notification to DSS, or build it into the methrix itself.