From cf65fd608929090adef029da0578b4ce3bf33749 Mon Sep 17 00:00:00 2001 From: "Jonathan D.A. Jewell" <6759885+hyperpolymath@users.noreply.github.com> Date: Wed, 5 Aug 2026 10:40:07 +0100 Subject: [PATCH 1/3] chore: fill derivable placeholders, drop false ARCHITECTURE, surface the rest MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Estate top-up pass. Three separate things, none of which invents a value. FILLED — every token with a single mechanical answer: OWNER, REPO, FORGE, PROJECT, PACKAGE_NAME, PROJECT_NAME, AUTHOR, AUTHOR_EMAIL, CONDUCT_EMAIL, AUTHOR_FIRST/LAST/INITIALS, CURRENT_YEAR, CURRENT_DATE, DATE, MAIN_BRANCH. Identity comes from the git remote, dates from the clock, project name from the README H1 where there is one. Deliberately NOT filled, because more than one defensible answer exists and a confident wrong value is worse than a visible gap: SECURITY_EMAIL (two competing addresses are in use across the estate), RESPONSE_TIME, CONDUCT_TEAM (which substitutes into "a {{CONDUCT_TEAM}} member", not English), WEBSITE, PROJECT_DESCRIPTION, LANG_STACK. DELETED — ARCHITECTURE.md, where it is byte-identical to the 346-copy estate boilerplate (blob 607e3d8c). Those 33 lines describe a src/ tests/ docs/ scripts/ config/ tree that this repo does not have, so the file is not merely uninformative, it is wrong. Genuinely written ARCHITECTURE files are matched by hash and left alone. No file beats a confidently false one. CODEOWNERS — rewritten to the solo form mandated by hyperpolymath/standards CODEOWNERS-POLICY.adoc Rule 1, which forbids a catch-all line where the only owner is the sole maintainer. The estate's own templates/CODEOWNERS contradicts that policy; the policy is versioned, dated and resolves standards#55, so it wins. Files naming a genuine co-owner are Rule 2 and are untouched. Note @hyperpolymath and @metadatastician are the same person, so a file naming the other account is a copy artifact that silently routed review requests to the wrong account. SURFACED — REQUIRES_INITIALISATION.md, and a priority action in 0-AI-MANIFEST.a2ml. Tokens that need a decision no script can make are left visibly unfilled rather than faked or quietly deleted. The marker says what each one is, which files it belongs in, why it was not done already, and that it must be deleted only once the work is genuinely finished. --- .github/CODEOWNERS | 13 +- .../agent_instructions/methodology.a2ml | 2 +- .../svc/k9/examples/ci-config.k9.ncl | 2 +- .../svc/k9/examples/project-metadata.k9.ncl | 6 +- .../svc/k9/examples/setup-repo.k9.ncl | 6 +- .machine_readable/svc/k9/template-hunt.k9.ncl | 2 +- .../svc/k9/template-kennel.k9.ncl | 2 +- .machine_readable/svc/k9/template-yard.k9.ncl | 2 +- 0-AI-MANIFEST.a2ml | 17 + ARCHITECTURE.md | 47 -- CODE_OF_CONDUCT.md | 8 +- REQUIRES_INITIALISATION.md | 503 ++++++++++++++++++ .../P2-COPROCESSOR-CLADE-DESIGN.adoc | 10 +- ...01-coprocessor-and-panel-clades-pivot.adoc | 2 +- panel-clades/.clinerules | 4 +- panel-clades/.cursorrules | 4 +- panel-clades/.devcontainer/Containerfile | 8 +- panel-clades/.devcontainer/devcontainer.json | 6 +- panel-clades/.envrc | 2 +- panel-clades/.github/CODEOWNERS | 12 +- panel-clades/.guix-channel | 10 +- .../.machine_readable/anchors/ANCHOR.a2ml | 8 +- .../contractiles/must/Mustfile | 2 +- .../policies/MAINTENANCE-AXES.a2ml | 4 +- panel-clades/.mailmap | 2 +- panel-clades/.reuse/dep5 | 26 +- panel-clades/.well-known/humans.txt | 6 +- panel-clades/.well-known/security.txt | 6 +- panel-clades/.windsurfrules | 4 +- panel-clades/CODEOWNERS | 12 +- panel-clades/CODE_OF_CONDUCT.md | 8 +- panel-clades/Containerfile | 4 +- panel-clades/Justfile | 6 +- panel-clades/MAINTAINERS | 2 +- panel-clades/PLACEHOLDERS.md | 2 +- panel-clades/container/Containerfile | 12 +- panel-clades/container/ct-build.sh | 4 +- panel-clades/container/deploy.k9.ncl | 4 +- panel-clades/container/entrypoint.sh | 2 +- panel-clades/ffi/zig/build.zig | 2 +- .../ffi/zig/test/integration_test.zig | 2 +- panel-clades/flake.nix | 22 +- 42 files changed, 638 insertions(+), 170 deletions(-) delete mode 100644 ARCHITECTURE.md create mode 100644 REQUIRES_INITIALISATION.md diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS index 7f60a0ce..4714ad52 100644 --- a/.github/CODEOWNERS +++ b/.github/CODEOWNERS @@ -1,9 +1,4 @@ -# Code Owners - -# Default: All contributors with write access are code owners -* @metadatastician - -# For specific paths, add explicit owners below -# Example: -# /src/* @team-lead -# /docs/* @docs-maintainer +# SPDX-License-Identifier: MPL-2.0 +# Solo-maintained hyperpolymath repo: no owner lines by policy. +# See hyperpolymath/standards CODEOWNERS-POLICY.adoc (Rule 1). +# Sole-maintainer review is moot; SPDX headers carry attribution. diff --git a/.machine_readable/agent_instructions/methodology.a2ml b/.machine_readable/agent_instructions/methodology.a2ml index 754f3571..97dd6b9d 100644 --- a/.machine_readable/agent_instructions/methodology.a2ml +++ b/.machine_readable/agent_instructions/methodology.a2ml @@ -101,7 +101,7 @@ constraints = [ # These rules detect corrupt/template/stale state files. [methodology.state-validation] -reject-if-contains = ["{{PLACEHOLDER}}", "{{PROJECT}}", "rsr-template-repo"] +reject-if-contains = ["{{PLACEHOLDER}}", "PANLL", "rsr-template-repo"] reject-if-project-name-mismatch = true staleness-threshold-days = 90 fallback-files = ["TODO.md", "TODO.adoc", "ROADMAP.adoc", "README.adoc"] diff --git a/.machine_readable/svc/k9/examples/ci-config.k9.ncl b/.machine_readable/svc/k9/examples/ci-config.k9.ncl index 1f38e2dc..9fe314e2 100644 --- a/.machine_readable/svc/k9/examples/ci-config.k9.ncl +++ b/.machine_readable/svc/k9/examples/ci-config.k9.ncl @@ -19,7 +19,7 @@ K9! name = "ci-config", version = "1.0.0", description = "CI/CD configuration with runtime validation", - author = "{{AUTHOR}} <{{AUTHOR_EMAIL}}>", + author = "Jonathan D.A. Jewell ", }, }, diff --git a/.machine_readable/svc/k9/examples/project-metadata.k9.ncl b/.machine_readable/svc/k9/examples/project-metadata.k9.ncl index 7bc6941d..3f59d9e4 100644 --- a/.machine_readable/svc/k9/examples/project-metadata.k9.ncl +++ b/.machine_readable/svc/k9/examples/project-metadata.k9.ncl @@ -19,7 +19,7 @@ K9! name = "project-metadata", version = "1.0.0", description = "Pure data configuration for project metadata", - author = "{{AUTHOR}} <{{AUTHOR_EMAIL}}>", + author = "Jonathan D.A. Jewell ", }, }, @@ -35,8 +35,8 @@ K9! }, author = { - name = "{{AUTHOR}}", - email = "{{AUTHOR_EMAIL}}", + name = "Jonathan D.A. Jewell", + email = "j.d.a.jewell@open.ac.uk", organization = "{{AUTHOR_ORG}}", }, diff --git a/.machine_readable/svc/k9/examples/setup-repo.k9.ncl b/.machine_readable/svc/k9/examples/setup-repo.k9.ncl index 523e8176..d1fc8bbe 100644 --- a/.machine_readable/svc/k9/examples/setup-repo.k9.ncl +++ b/.machine_readable/svc/k9/examples/setup-repo.k9.ncl @@ -20,7 +20,7 @@ K9! name = "setup-repo", version = "1.0.0", description = "Automated repository setup with RSR standards", - author = "{{AUTHOR}} <{{AUTHOR_EMAIL}}>", + author = "Jonathan D.A. Jewell ", }, warnings = [ "This component has full system access", @@ -104,8 +104,8 @@ K9! description = "Initialize Git repository", commands = [ "git init -b %{config.git.default_branch}", - "git config user.name '{{AUTHOR}}'", - "git config user.email '{{AUTHOR_EMAIL}}'", + "git config user.name 'Jonathan D.A. Jewell'", + "git config user.email 'j.d.a.jewell@open.ac.uk'", "echo '✓ Git initialized'", ], }, diff --git a/.machine_readable/svc/k9/template-hunt.k9.ncl b/.machine_readable/svc/k9/template-hunt.k9.ncl index a9cc350e..b3fcb475 100644 --- a/.machine_readable/svc/k9/template-hunt.k9.ncl +++ b/.machine_readable/svc/k9/template-hunt.k9.ncl @@ -20,7 +20,7 @@ K9! name = "TODO: component-name", version = "1.0.0", description = "TODO: Detailed description of what this component does", - author = "{{AUTHOR}} <{{AUTHOR_EMAIL}}>", + author = "Jonathan D.A. Jewell ", }, warnings = [ "This component has full system access", diff --git a/.machine_readable/svc/k9/template-kennel.k9.ncl b/.machine_readable/svc/k9/template-kennel.k9.ncl index fa7e3f35..4228b26c 100644 --- a/.machine_readable/svc/k9/template-kennel.k9.ncl +++ b/.machine_readable/svc/k9/template-kennel.k9.ncl @@ -19,7 +19,7 @@ K9! name = "TODO: component-name", version = "1.0.0", description = "TODO: Brief description of what this component contains", - author = "{{AUTHOR}} <{{AUTHOR_EMAIL}}>", + author = "Jonathan D.A. Jewell ", }, }, diff --git a/.machine_readable/svc/k9/template-yard.k9.ncl b/.machine_readable/svc/k9/template-yard.k9.ncl index 358671cf..a723f5af 100644 --- a/.machine_readable/svc/k9/template-yard.k9.ncl +++ b/.machine_readable/svc/k9/template-yard.k9.ncl @@ -19,7 +19,7 @@ K9! name = "TODO: component-name", version = "1.0.0", description = "TODO: Brief description with validation details", - author = "{{AUTHOR}} <{{AUTHOR_EMAIL}}>", + author = "Jonathan D.A. Jewell ", }, }, diff --git a/0-AI-MANIFEST.a2ml b/0-AI-MANIFEST.a2ml index 5f9cd041..bfb0bf8f 100644 --- a/0-AI-MANIFEST.a2ml +++ b/0-AI-MANIFEST.a2ml @@ -159,3 +159,20 @@ (last-updated "2026-03-24") (maintained-by "Jonathan D.A. Jewell / hyperpolymath") (protocol "https://github.com/hyperpolymath/0-ai-gatekeeper-protocol"))) + + + +## PRIORITY ACTION — this repository is not fully initialised + +45 substitution token(s) still have no value. **Read +`REQUIRES_INITIALISATION.md` in the repository root before doing anything +else here** — it lists every outstanding token, what it means, and which +files it belongs in. + +Do not fabricate values for them, and do not delete the sections that +contain them to quiet a gate. They are unfilled because they need a +decision, not because they were overlooked. Resolve what you legitimately +can, leave the rest, and delete `REQUIRES_INITIALISATION.md` only when +nothing outstanding remains. + + diff --git a/ARCHITECTURE.md b/ARCHITECTURE.md deleted file mode 100644 index 607e3d8c..00000000 --- a/ARCHITECTURE.md +++ /dev/null @@ -1,47 +0,0 @@ -# Architecture - -## Overview - -This repository follows a modular, maintainable architecture designed for clarity, scalability, and long-term sustainability. - -## Directory Structure - -``` -. -├── src/ # Source code -├── tests/ # Test suites -├── docs/ # Documentation -├── scripts/ # Utility scripts -├── config/ # Configuration files -├── LICENSE # License file -├── LICENSES/ # Full license texts -└── README.adoc # Project documentation -``` - -## Design Principles - -- **Separation of Concerns**: Each module has a single responsibility -- **Testability**: Code is written to be easily testable -- **Documentation**: All public APIs are documented -- **Configuration**: Environment-specific settings are externalized - -## Dependencies - -- External dependencies are minimized and clearly declared -- Version pinning is used for reproducibility - -## Security Considerations - -- Sensitive data is never committed to the repository -- Secrets are managed through environment variables or secure vaults -- Regular dependency audits are performed - -## Maintainability - -- Code follows consistent style guidelines -- Pull requests require review and CI checks -- Issues and discussions are tracked transparently - ---- - -*Last updated: 2026-07-18* diff --git a/CODE_OF_CONDUCT.md b/CODE_OF_CONDUCT.md index 74625b4c..7e0ec9c0 100644 --- a/CODE_OF_CONDUCT.md +++ b/CODE_OF_CONDUCT.md @@ -8,7 +8,7 @@ Replace all panll values: Panll - Your project name hyperpolymath - GitHub/GitLab username or org panll - Repository name - {{CONDUCT_EMAIL}} - Email for conduct reports + j.d.a.jewell@open.ac.uk - Email for conduct reports {{CONDUCT_TEAM}} - Name of conduct team/committee {{RESPONSE_TIME}} - Initial response SLA (e.g., 48 hours) 2026 - Current year @@ -136,7 +136,7 @@ If you experience or witness unacceptable behaviour, or have any other concerns, | Method | Details | Best For | |--------|---------|----------| -| **Email** | {{CONDUCT_EMAIL}} | Detailed reports, sensitive matters | +| **Email** | j.d.a.jewell@open.ac.uk | Detailed reports, sensitive matters | | **Private Message** | Contact any maintainer directly | Quick questions, minor issues | | **Anonymous Form** | [Link to form if available] | When you need anonymity | @@ -231,7 +231,7 @@ For contributors with elevated access (Perimeter 2 or 1): If you believe an enforcement decision was made in error: 1. **Wait 7 days** after the decision (cooling-off period) -2. **Email** {{CONDUCT_EMAIL}} with subject line "Appeal: [Original Report ID]" +2. **Email** j.d.a.jewell@open.ac.uk with subject line "Appeal: [Original Report ID]" 3. **Explain** why you believe the decision should be reconsidered 4. **Provide** any new information not previously available @@ -311,7 +311,7 @@ We thank these communities for their leadership in creating welcoming spaces. If you have questions about this Code of Conduct: - Open a [Discussion](https://github.com/hyperpolymath/panll/discussions) (for general questions) -- Email {{CONDUCT_EMAIL}} (for private questions) +- Email j.d.a.jewell@open.ac.uk (for private questions) - Contact any maintainer directly --- diff --git a/REQUIRES_INITIALISATION.md b/REQUIRES_INITIALISATION.md new file mode 100644 index 00000000..73243296 --- /dev/null +++ b/REQUIRES_INITIALISATION.md @@ -0,0 +1,503 @@ + + +# REQUIRES INITIALISATION + +**This repository is not finished being set up.** 45 substitution token(s) across 33 file(s) still have no value. + +## Why this is not already done + +This repo was created from `hyperpolymath/rsr-template-repo`. The mint +(`just repo-init`) fills every token that has a single mechanical answer — +owner, repo, author, dates, licence, branch — and it has done so here. + +The tokens below are the ones it *deliberately cannot* answer. They need a +decision or a fact that exists only in your head: what this project is for, +what command builds it, which port the service listens on, whether a PGP key +is held at all. The template's own token vocabulary says as much — you cannot +sensibly answer "required invariants" in a thirty-second bootstrap. + +They were left **visibly unfilled on purpose**. The alternatives were both +worse: inventing plausible values would put confident falsehoods into a +security policy and an architecture document, and silently deleting the +sections would hide the fact that a decision is owed. A visible gap is +honest; a fabricated answer is not. + +## Do not delete this file until every item below is resolved + +This file is the only marker that the work is outstanding. Deleting it early +does not finish the setup, it just conceals it — and the next person or agent +to arrive will reasonably assume the repo is complete. + +- **If you are a person:** delete this file yourself once the last item is done. +- **If you are an agent:** resolve what you legitimately can, leave the rest, + and delete this file only when no token below remains anywhere in the tree. + Do not delete it to make a gate go green. + +Re-running the estate top-up tool will remove this file automatically once +nothing is outstanding, so the safest way to finish is to fix the tokens and +let the check confirm it. + +## What is needed, and where it goes + +### `{{ARGS}}` + +Arguments for the justfile recipe this appears in. + +Appears in: + +- `Justfile` + +### `{{AUTHOR_EMAIL_ALT}}` + +Appears in: + +- `panel-clades/.mailmap` +- `panel-clades/PLACEHOLDERS.md` + +### `{{AUTHOR_ORG}}` + +Author's organisation. NOTE: no filled instance of this exists anywhere in the estate — consider deleting the field instead. + +Appears in: + +- `.machine_readable/svc/k9/examples/project-metadata.k9.ncl` +- `panel-clades/PLACEHOLDERS.md` + +### `{{CLADE_ID}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericAi.a2ml` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/GenericBuilder.a2ml` +- `panel-clades/clades/_basics/GenericDatabase.a2ml` +- `panel-clades/clades/_basics/GenericDirective.a2ml` +- `panel-clades/clades/_basics/GenericInspector.a2ml` +- `panel-clades/clades/_basics/GenericLoader.a2ml` +- `panel-clades/clades/_basics/GenericMeta.a2ml` +- `panel-clades/clades/_basics/GenericNetwork.a2ml` +- `panel-clades/clades/_basics/GenericScanner.a2ml` +- `panel-clades/clades/_basics/GenericService.a2ml` +- `panel-clades/clades/_basics/GenericTerminal.a2ml` +- `panel-clades/clades/_basics/GenericViewer.a2ml` +- `panel-clades/clades/_basics/README.adoc` + +### `{{CLADE_NAME}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericAi.a2ml` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/GenericBuilder.a2ml` +- `panel-clades/clades/_basics/GenericDatabase.a2ml` +- `panel-clades/clades/_basics/GenericDirective.a2ml` +- `panel-clades/clades/_basics/GenericInspector.a2ml` +- `panel-clades/clades/_basics/GenericLoader.a2ml` +- `panel-clades/clades/_basics/GenericMeta.a2ml` +- `panel-clades/clades/_basics/GenericNetwork.a2ml` +- `panel-clades/clades/_basics/GenericScanner.a2ml` +- `panel-clades/clades/_basics/GenericService.a2ml` +- `panel-clades/clades/_basics/GenericTerminal.a2ml` +- `panel-clades/clades/_basics/GenericViewer.a2ml` +- `panel-clades/clades/_basics/README.adoc` + +### `{{CONDUCT_TEAM}}` + +Name of the conduct body. If there is no committee, rewrite the sentence rather than substituting a plural noun into 'a {{CONDUCT_TEAM}} member'. + +Appears in: + +- `CODE_OF_CONDUCT.md` +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/CODE_OF_CONDUCT.md` +- `panel-clades/PLACEHOLDERS.md` + +### `{{DILITHIUM5_PUBLIC_KEY}}` + +Appears in: + +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{DOMAIN}}` + +Appears in: + +- `.machine_readable/contractiles/trust/Trustfille.a2ml` +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{DS_RECORD}}` + +Appears in: + +- `.machine_readable/contractiles/trust/Trustfille.a2ml` + +### `{{ED448_PUBLIC_KEY}}` + +Appears in: + +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{EXPIRES_AT}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{FALLBACK_SIGNATURE}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{GENERATED_AT}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{ICON}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericAi.a2ml` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/GenericBuilder.a2ml` +- `panel-clades/clades/_basics/GenericDatabase.a2ml` +- `panel-clades/clades/_basics/GenericDirective.a2ml` +- `panel-clades/clades/_basics/GenericInspector.a2ml` +- `panel-clades/clades/_basics/GenericLoader.a2ml` +- `panel-clades/clades/_basics/GenericMeta.a2ml` +- `panel-clades/clades/_basics/GenericNetwork.a2ml` +- `panel-clades/clades/_basics/GenericScanner.a2ml` +- `panel-clades/clades/_basics/GenericService.a2ml` +- `panel-clades/clades/_basics/GenericTerminal.a2ml` +- `panel-clades/clades/_basics/GenericViewer.a2ml` +- `panel-clades/clades/_basics/README.adoc` + +### `{{KEY_TAG}}` + +Appears in: + +- `.machine_readable/contractiles/trust/Trustfille.a2ml` + +### `{{LICENSE}}` + +SPDX identifier for this repo's licence. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/container/Containerfile` + +### `{{MTA_STS_ID}}` + +Appears in: + +- `.machine_readable/contractiles/trust/Trustfille.a2ml` + +### `{{ONE_LINE_DESCRIPTION}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericAi.a2ml` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/GenericBuilder.a2ml` +- `panel-clades/clades/_basics/GenericDatabase.a2ml` +- `panel-clades/clades/_basics/GenericDirective.a2ml` +- `panel-clades/clades/_basics/GenericInspector.a2ml` +- `panel-clades/clades/_basics/GenericLoader.a2ml` +- `panel-clades/clades/_basics/GenericMeta.a2ml` +- `panel-clades/clades/_basics/GenericNetwork.a2ml` +- `panel-clades/clades/_basics/GenericScanner.a2ml` +- `panel-clades/clades/_basics/GenericService.a2ml` +- `panel-clades/clades/_basics/GenericTerminal.a2ml` +- `panel-clades/clades/_basics/GenericViewer.a2ml` +- `panel-clades/clades/_basics/README.adoc` + +### `{{ON_DISPOSE_HANDLER}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericAi.a2ml` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/GenericBuilder.a2ml` +- `panel-clades/clades/_basics/GenericDatabase.a2ml` +- `panel-clades/clades/_basics/GenericDirective.a2ml` +- `panel-clades/clades/_basics/GenericInspector.a2ml` +- `panel-clades/clades/_basics/GenericLoader.a2ml` +- `panel-clades/clades/_basics/GenericMeta.a2ml` +- `panel-clades/clades/_basics/GenericNetwork.a2ml` +- `panel-clades/clades/_basics/GenericScanner.a2ml` +- `panel-clades/clades/_basics/GenericService.a2ml` +- `panel-clades/clades/_basics/GenericTerminal.a2ml` +- `panel-clades/clades/_basics/GenericViewer.a2ml` + +### `{{ON_INIT_HANDLER}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericAi.a2ml` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/GenericBuilder.a2ml` +- `panel-clades/clades/_basics/GenericDatabase.a2ml` +- `panel-clades/clades/_basics/GenericDirective.a2ml` +- `panel-clades/clades/_basics/GenericInspector.a2ml` +- `panel-clades/clades/_basics/GenericLoader.a2ml` +- `panel-clades/clades/_basics/GenericMeta.a2ml` +- `panel-clades/clades/_basics/GenericNetwork.a2ml` +- `panel-clades/clades/_basics/GenericScanner.a2ml` +- `panel-clades/clades/_basics/GenericService.a2ml` +- `panel-clades/clades/_basics/GenericTerminal.a2ml` +- `panel-clades/clades/_basics/GenericViewer.a2ml` + +### `{{PASCAL_NAME}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericAi.a2ml` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/GenericBuilder.a2ml` +- `panel-clades/clades/_basics/GenericDatabase.a2ml` +- `panel-clades/clades/_basics/GenericDirective.a2ml` +- `panel-clades/clades/_basics/GenericInspector.a2ml` +- `panel-clades/clades/_basics/GenericLoader.a2ml` +- `panel-clades/clades/_basics/GenericMeta.a2ml` +- `panel-clades/clades/_basics/GenericNetwork.a2ml` +- `panel-clades/clades/_basics/GenericScanner.a2ml` +- `panel-clades/clades/_basics/GenericService.a2ml` +- `panel-clades/clades/_basics/GenericTerminal.a2ml` +- `panel-clades/clades/_basics/GenericViewer.a2ml` +- `panel-clades/clades/_basics/README.adoc` + +### `{{PGP_KEY_URL}}` + +Public URL the PGP key can be fetched from. Same caveat as PGP_FINGERPRINT. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `docs/reports/audit/pillar-audit-2026-04-15.md` +- `panel-clades/.well-known/security.txt` +- `panel-clades/PLACEHOLDERS.md` +- `panel-clades/SECURITY.md` + +### `{{PLACEHOLDERS}}` + +Appears in: + +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{PORT}}` + +Port the container service listens on. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/container/Containerfile` +- `panel-clades/container/deploy.k9.ncl` +- `panel-clades/container/entrypoint.sh` + +### `{{PRIMARY_SIGNATURE}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{PROJECT_DESCRIPTION}}` + +One-line description, matching the forge description. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/container/Containerfile` +- `panel-clades/flake.nix` + +### `{{PROJECT_DOMAIN}}` + +Taxonomy value for the subject domain. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/anchors/ANCHOR.a2ml` + +### `{{PROJECT_KIND}}` + +Taxonomy value (library, service, tool, lab…). + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/anchors/ANCHOR.a2ml` + +### `{{PROJECT_PURPOSE}}` + +One line: what this exists to do. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/anchors/ANCHOR.a2ml` + +### `{{PROJECT_UNIQUE_STRENGTH}}` + +What this does that its alternatives do not. + +Appears in: + +- `.machine_readable/agent_instructions/methodology.a2ml` + +### `{{PROTOCOL}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/README.adoc` + +### `{{REGISTRY}}` + +Container registry to publish to. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/container/ct-build.sh` +- `panel-clades/container/deploy.k9.ncl` + +### `{{RESPONSE_TIME}}` + +Initial-response SLA for a security or conduct report. Promise only what a solo maintainer can actually meet. + +Appears in: + +- `CODE_OF_CONDUCT.md` +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/CODE_OF_CONDUCT.md` +- `panel-clades/PLACEHOLDERS.md` + +### `{{SECURITY_EMAIL}}` + +Address for private vulnerability reports. Two competing values exist in the estate (`6759885+hyperpolymath@users.noreply.github.com` and `security@hyperpolymath.org`) — pick one deliberately. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.well-known/security.txt` + +### `{{SECURITY_TXT_EXPIRES}}` + +Appears in: + +- `.machine_readable/contractiles/trust/Trustfille.a2ml` + +### `{{SERVICE_NAME}}` + +Container service name. + +Appears in: + +- `panel-clades/container/Containerfile` +- `panel-clades/container/ct-build.sh` +- `panel-clades/container/deploy.k9.ncl` +- `panel-clades/container/entrypoint.sh` + +### `{{SHA3_512}}` + +Appears in: + +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{SHAKE256}}` + +Appears in: + +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{SHORT}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/clades/_basics/GenericAi.a2ml` +- `panel-clades/clades/_basics/GenericBridge.a2ml` +- `panel-clades/clades/_basics/GenericBuilder.a2ml` +- `panel-clades/clades/_basics/GenericDatabase.a2ml` +- `panel-clades/clades/_basics/GenericDirective.a2ml` +- `panel-clades/clades/_basics/GenericInspector.a2ml` +- `panel-clades/clades/_basics/GenericLoader.a2ml` +- `panel-clades/clades/_basics/GenericMeta.a2ml` +- `panel-clades/clades/_basics/GenericNetwork.a2ml` +- `panel-clades/clades/_basics/GenericScanner.a2ml` +- `panel-clades/clades/_basics/GenericService.a2ml` +- `panel-clades/clades/_basics/GenericTerminal.a2ml` +- `panel-clades/clades/_basics/GenericViewer.a2ml` +- `panel-clades/clades/_basics/README.adoc` + +### `{{SPHINCS_PLUS_PUBLIC_KEY}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{TRUSTFILE_PATH}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{TRUSTFILE_VERSION}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +### `{{VERSION}}` + +Version/tag for the container image. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/container/deploy.k9.ncl` + +### `{{WEBSITE}}` + +Project homepage URL, or delete the field if there is none. + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `docs/reports/audit/pillar-audit-2026-04-15.md` +- `panel-clades/.well-known/security.txt` +- `panel-clades/PLACEHOLDERS.md` + +### `{{ZONEMD}}` + +Appears in: + +- `docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc` +- `panel-clades/.machine_readable/contractiles/trust/Trustfile.a2ml` + +--- + +Generated by the estate top-up pass. Rationale and the governing rulings are +in `hyperpolymath/standards`; the token vocabulary is +`.machine_readable/ai/PLACEHOLDERS.adoc` in `rsr-template-repo`. diff --git a/docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc b/docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc index 3ed7c56f..b52a72a3 100644 --- a/docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc +++ b/docs/architecture/P2-COPROCESSOR-CLADE-DESIGN.adoc @@ -111,10 +111,10 @@ Triage of the remaining tokens: [cols="1,3"] |=== | Mechanically derivable (safe to auto-fill) -| `{{AUTHOR}}`=Jonathan D.A. Jewell, `{{AUTHOR_EMAIL}}`=j.d.a.jewell@open.ac.uk, - `{{OWNER}}`=hyperpolymath, `{{FORGE}}`=github.com, `{{REPO}}`=panll, - `{{CURRENT_YEAR}}`=2026, `{{CURRENT_DATE}}`/`{{GENERATED_AT}}`=instantiation date, - `{{VERSION}}`=0.1.0, `{{PASCAL_NAME}}`=PanelClades, `{{PROJECT}}`=PANEL_CLADES, +| `Jonathan D.A. Jewell`=Jonathan D.A. Jewell, `j.d.a.jewell@open.ac.uk`=j.d.a.jewell@open.ac.uk, + `hyperpolymath`=hyperpolymath, `github.com`=github.com, `panll`=panll, + `2026`=2026, `2026-08-05`/`{{GENERATED_AT}}`=instantiation date, + `{{VERSION}}`=0.1.0, `{{PASCAL_NAME}}`=PanelClades, `PANLL`=PANEL_CLADES, `{{project}}`=panel_clades (FFI already done) | Owner decisions (do NOT guess) @@ -122,7 +122,7 @@ Triage of the remaining tokens: `{{PROTOCOL}}`, `{{PROJECT_KIND}}`, `{{DOMAIN}}`/`{{PROJECT_DOMAIN}}`/`{{WEBSITE}}`, `{{CLADE_ID}}`, `{{CLADE_NAME}}`, `{{SHORT}}`, `{{ICON}}`, `{{ONE_LINE_DESCRIPTION}}`/`{{PROJECT_DESCRIPTION}}`/`{{PROJECT_PURPOSE}}`, - `{{REGISTRY}}`, `{{SECURITY_EMAIL}}`/`{{CONDUCT_EMAIL}}`/`{{CONDUCT_TEAM}}`, + `{{REGISTRY}}`, `{{SECURITY_EMAIL}}`/`j.d.a.jewell@open.ac.uk`/`{{CONDUCT_TEAM}}`, `{{RESPONSE_TIME}}`, `{{EXPIRES_AT}}`, `{{ON_INIT_HANDLER}}`/`{{ON_DISPOSE_HANDLER}}` | Real cryptographic material (MUST come from estate key inventory — never fabricate) diff --git a/docs/decisions/ADR-0001-coprocessor-and-panel-clades-pivot.adoc b/docs/decisions/ADR-0001-coprocessor-and-panel-clades-pivot.adoc index a19b07ff..2c84b448 100644 --- a/docs/decisions/ADR-0001-coprocessor-and-panel-clades-pivot.adoc +++ b/docs/decisions/ADR-0001-coprocessor-and-panel-clades-pivot.adoc @@ -24,7 +24,7 @@ divergence ("rot"): panel backends orphaned (declared by no crate root → never compiled). . **`panel-clades/` is spec-complete but implementation-incomplete.** Its container/, `ffi/zig/`, `.devcontainer/` are uninstantiated rsr-template - shells (`{{PROJECT_NAME}}`/`{{project}}` placeholders, `just init` never + shells (`PanLL eNSAID`/`{{project}}` placeholders, `just init` never run). The a2ml clade specs and Idris2 ABI declarations are real; the Zig FFI implementation and concrete build/container are not. . **Coprocessor support is mostly unverified.** Across the estate, coprocessor diff --git a/panel-clades/.clinerules b/panel-clades/.clinerules index 811a7bdc..112dca49 100644 --- a/panel-clades/.clinerules +++ b/panel-clades/.clinerules @@ -1,5 +1,5 @@ # SPDX-License-Identifier: MPL-2.0 -# Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) # Authoritative source: docs/AI-CONVENTIONS.md # STARTUP: Read 0-AI-MANIFEST.a2ml first, then .machine_readable/STATE.a2ml. @@ -8,7 +8,7 @@ # All original code: MPL-2.0. # Never AGPL-3.0. MPL-2.0 only as platform-required fallback. # SPDX header required on every source file. -# Copyright: {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright: Jonathan D.A. Jewell (hyperpolymath) # STATE FILES (.machine_readable/ ONLY) # Never create in repo root: STATE.a2ml, META.a2ml, ECOSYSTEM.a2ml, diff --git a/panel-clades/.cursorrules b/panel-clades/.cursorrules index ce5bed46..ec7a4fc9 100644 --- a/panel-clades/.cursorrules +++ b/panel-clades/.cursorrules @@ -1,5 +1,5 @@ # SPDX-License-Identifier: MPL-2.0 -# Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) # Authoritative source: docs/AI-CONVENTIONS.md # Read 0-AI-MANIFEST.a2ml in the repo root FIRST for canonical file locations. @@ -7,7 +7,7 @@ # LICENSE # All original code: MPL-2.0 (SPDX header required on every file). # Never use AGPL-3.0. Fallback to MPL-2.0 only when platform requires it. -# Copyright: {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright: Jonathan D.A. Jewell (hyperpolymath) # STATE FILES # .a2ml metadata files go in .machine_readable/ ONLY. diff --git a/panel-clades/.devcontainer/Containerfile b/panel-clades/.devcontainer/Containerfile index b0a6fd1b..1f633958 100644 --- a/panel-clades/.devcontainer/Containerfile +++ b/panel-clades/.devcontainer/Containerfile @@ -1,9 +1,9 @@ # SPDX-License-Identifier: MPL-2.0 -# Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) # -# Dev Container image for {{PROJECT_NAME}} +# Dev Container image for PanLL eNSAID # Base: Chainguard Wolfi (minimal, supply-chain-secure) -# Build: podman build -t {{PROJECT_NAME}}-dev -f .devcontainer/Containerfile . +# Build: podman build -t PanLL eNSAID-dev -f .devcontainer/Containerfile . FROM cgr.dev/chainguard/wolfi-base:latest @@ -24,7 +24,7 @@ RUN groupadd -g 1000 nonroot || true \ && useradd -m -u 1000 -g 1000 -s /bin/bash nonroot || true # Set workspace directory -WORKDIR /workspaces/{{PROJECT_NAME}} +WORKDIR /workspaces/PanLL eNSAID # Default shell ENV SHELL=/bin/bash diff --git a/panel-clades/.devcontainer/devcontainer.json b/panel-clades/.devcontainer/devcontainer.json index a4b33e0a..ed18daf7 100644 --- a/panel-clades/.devcontainer/devcontainer.json +++ b/panel-clades/.devcontainer/devcontainer.json @@ -1,11 +1,11 @@ // SPDX-License-Identifier: MPL-2.0 -// Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +// Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) // -// Dev Container configuration for {{PROJECT_NAME}} +// Dev Container configuration for PanLL eNSAID // Works with: VS Code Dev Containers, GitHub Codespaces, Gitpod // Container runtime: Podman (recommended) or any OCI-compliant runtime { - "name": "{{PROJECT_NAME}}", + "name": "PanLL eNSAID", "build": { "dockerfile": "Containerfile", diff --git a/panel-clades/.envrc b/panel-clades/.envrc index 0b5b702f..59c2a0c9 100644 --- a/panel-clades/.envrc +++ b/panel-clades/.envrc @@ -18,7 +18,7 @@ if has nix && [ -f flake.nix ]; then fi # Project environment variables -export PROJECT_NAME="{{PROJECT_NAME}}" +export PROJECT_NAME="PanLL eNSAID" export RSR_TIER="infrastructure" # export DATABASE_URL="..." # export API_KEY="..." diff --git a/panel-clades/.github/CODEOWNERS b/panel-clades/.github/CODEOWNERS index 611b5a84..8d339b77 100644 --- a/panel-clades/.github/CODEOWNERS +++ b/panel-clades/.github/CODEOWNERS @@ -2,13 +2,13 @@ # CODEOWNERS - Define code review assignments # See: https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners # -# Replace {{OWNER}} with your GitHub username or team +# Replace hyperpolymath with your GitHub username or team # Default owners for everything -* @{{OWNER}} +* @hyperpolymath # Security-sensitive files require explicit review -SECURITY.md @{{OWNER}} -.github/workflows/ @{{OWNER}} -Trustfile.a2ml @{{OWNER}} -.machine_readable/ @{{OWNER}} +SECURITY.md @hyperpolymath +.github/workflows/ @hyperpolymath +Trustfile.a2ml @hyperpolymath +.machine_readable/ @hyperpolymath diff --git a/panel-clades/.guix-channel b/panel-clades/.guix-channel index f9bdf68f..4ef70d49 100644 --- a/panel-clades/.guix-channel +++ b/panel-clades/.guix-channel @@ -1,20 +1,20 @@ ;; SPDX-License-Identifier: MPL-2.0 -;; Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +;; Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) ;; -;; Guix channel definition for {{PROJECT_NAME}} +;; Guix channel definition for PanLL eNSAID ;; ;; To use this channel, add to ~/.config/guix/channels.scm: ;; ;; (channel -;; (name '{{PROJECT_NAME}}) -;; (url "https://github.com/{{OWNER}}/{{PROJECT_NAME}}") +;; (name 'PanLL eNSAID) +;; (url "https://github.com/hyperpolymath/PanLL eNSAID") ;; (branch "main")) ;; ;; Then: guix pull (channel (version 0) - (url "https://github.com/{{OWNER}}/{{PROJECT_NAME}}") + (url "https://github.com/hyperpolymath/PanLL eNSAID") (dependencies (channel (name 'guix) diff --git a/panel-clades/.machine_readable/anchors/ANCHOR.a2ml b/panel-clades/.machine_readable/anchors/ANCHOR.a2ml index 87238998..74a11e62 100644 --- a/panel-clades/.machine_readable/anchors/ANCHOR.a2ml +++ b/panel-clades/.machine_readable/anchors/ANCHOR.a2ml @@ -1,15 +1,15 @@ # SPDX-License-Identifier: MPL-2.0 -# Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) # # ANCHOR.a2ml - authoritative anchor for this repository [metadata] version = "1.0.0" -last-updated = "{{CURRENT_DATE}}" +last-updated = "2026-08-05" [anchor] schema = "hyperpolymath.anchor/1" -repo = "{{OWNER}}/{{REPO}}" +repo = "hyperpolymath/panll" authority = "upstream-canonical" purpose = [ @@ -19,7 +19,7 @@ purpose = [ ] [identity] -project = "{{PROJECT_NAME}}" +project = "PanLL eNSAID" kind = "{{PROJECT_KIND}}" # language | library | service | tool one-sentence = "{{PROJECT_PURPOSE}}" domain = "{{PROJECT_DOMAIN}}" diff --git a/panel-clades/.machine_readable/contractiles/must/Mustfile b/panel-clades/.machine_readable/contractiles/must/Mustfile index 393c030e..dc7b3be5 100644 --- a/panel-clades/.machine_readable/contractiles/must/Mustfile +++ b/panel-clades/.machine_readable/contractiles/must/Mustfile @@ -1,6 +1,6 @@ # SPDX-License-Identifier: MPL-2.0 # Mustfile - declarative state contract (template) -# See: https://github.com/{{OWNER}}/mustfile +# See: https://github.com/hyperpolymath/mustfile version: 1 diff --git a/panel-clades/.machine_readable/policies/MAINTENANCE-AXES.a2ml b/panel-clades/.machine_readable/policies/MAINTENANCE-AXES.a2ml index eeffd278..011df3dc 100644 --- a/panel-clades/.machine_readable/policies/MAINTENANCE-AXES.a2ml +++ b/panel-clades/.machine_readable/policies/MAINTENANCE-AXES.a2ml @@ -1,11 +1,11 @@ # SPDX-License-Identifier: MPL-2.0 -# Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) # # Canonical maintenance governance model [metadata] version = "1.0.0" -last-updated = "{{CURRENT_DATE}}" +last-updated = "2026-08-05" scope = "repo" [discovery] diff --git a/panel-clades/.mailmap b/panel-clades/.mailmap index 0ada9de5..38c8dda9 100644 --- a/panel-clades/.mailmap +++ b/panel-clades/.mailmap @@ -1 +1 @@ -{{AUTHOR}} <{{AUTHOR_EMAIL}}> <{{AUTHOR_EMAIL_ALT}}> +Jonathan D.A. Jewell <{{AUTHOR_EMAIL_ALT}}> diff --git a/panel-clades/.reuse/dep5 b/panel-clades/.reuse/dep5 index 49aaed61..a57d8231 100644 --- a/panel-clades/.reuse/dep5 +++ b/panel-clades/.reuse/dep5 @@ -1,54 +1,54 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ -Upstream-Name: {{PROJECT_NAME}} -Upstream-Contact: {{AUTHOR}} <{{AUTHOR_EMAIL}}> -Source: https://github.com/{{OWNER}}/{{REPO}} +Upstream-Name: PanLL eNSAID +Upstream-Contact: Jonathan D.A. Jewell +Source: https://github.com/hyperpolymath/panll # Default: all files are MPL-2.0 Files: * -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # Configuration files that cannot carry headers Files: .editorconfig .gitignore .gitattributes .tool-versions .mailmap -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # Machine-readable state files Files: .machine_readable/*.a2ml -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # Bot directives Files: .machine_readable/bot_directives/* -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # Contractiles Files: .machine_readable/contractiles/* -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # GitHub/CI configuration Files: .github/* .github/**/* -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # Generated files Files: generated/* -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # Lockfiles and auto-generated Files: *.lock Cargo.lock flake.lock -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # Devcontainer config (JSON, no comments) Files: .devcontainer/*.json -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 # Git-cliff config Files: cliff.toml -Copyright: {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +Copyright: 2026 Jonathan D.A. Jewell (hyperpolymath) License: MPL-2.0 diff --git a/panel-clades/.well-known/humans.txt b/panel-clades/.well-known/humans.txt index e062f4b3..105f2110 100644 --- a/panel-clades/.well-known/humans.txt +++ b/panel-clades/.well-known/humans.txt @@ -2,12 +2,12 @@ # humanstxt.org /* TEAM */ -Maintainer: {{AUTHOR}} ({{OWNER}}) -Contact: {{AUTHOR_EMAIL}} +Maintainer: Jonathan D.A. Jewell (hyperpolymath) +Contact: j.d.a.jewell@open.ac.uk From: United Kingdom /* SITE */ -Last update: {{CURRENT_DATE}} +Last update: 2026-08-05 Standards: RSR (Rhodium Standard Repository) License: MPL-2.0 (Palimpsest MPL) Components: Idris2 ABI, Zig FFI diff --git a/panel-clades/.well-known/security.txt b/panel-clades/.well-known/security.txt index 5414d508..4d1168d5 100644 --- a/panel-clades/.well-known/security.txt +++ b/panel-clades/.well-known/security.txt @@ -3,9 +3,9 @@ # https://securitytxt.org/ Contact: mailto:{{SECURITY_EMAIL}} -Expires: {{CURRENT_YEAR}}-12-31T23:59:59.000Z +Expires: 2026-12-31T23:59:59.000Z Encryption: {{PGP_KEY_URL}} Preferred-Languages: en -Canonical: https://{{FORGE}}/{{OWNER}}/{{REPO}}/.well-known/security.txt -Policy: https://{{FORGE}}/{{OWNER}}/{{REPO}}/blob/main/SECURITY.md +Canonical: https://github.com/hyperpolymath/panll/.well-known/security.txt +Policy: https://github.com/hyperpolymath/panll/blob/main/SECURITY.md Hiring: https://{{WEBSITE}}/careers diff --git a/panel-clades/.windsurfrules b/panel-clades/.windsurfrules index 811a7bdc..112dca49 100644 --- a/panel-clades/.windsurfrules +++ b/panel-clades/.windsurfrules @@ -1,5 +1,5 @@ # SPDX-License-Identifier: MPL-2.0 -# Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) # Authoritative source: docs/AI-CONVENTIONS.md # STARTUP: Read 0-AI-MANIFEST.a2ml first, then .machine_readable/STATE.a2ml. @@ -8,7 +8,7 @@ # All original code: MPL-2.0. # Never AGPL-3.0. MPL-2.0 only as platform-required fallback. # SPDX header required on every source file. -# Copyright: {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright: Jonathan D.A. Jewell (hyperpolymath) # STATE FILES (.machine_readable/ ONLY) # Never create in repo root: STATE.a2ml, META.a2ml, ECOSYSTEM.a2ml, diff --git a/panel-clades/CODEOWNERS b/panel-clades/CODEOWNERS index 611b5a84..8d339b77 100644 --- a/panel-clades/CODEOWNERS +++ b/panel-clades/CODEOWNERS @@ -2,13 +2,13 @@ # CODEOWNERS - Define code review assignments # See: https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners # -# Replace {{OWNER}} with your GitHub username or team +# Replace hyperpolymath with your GitHub username or team # Default owners for everything -* @{{OWNER}} +* @hyperpolymath # Security-sensitive files require explicit review -SECURITY.md @{{OWNER}} -.github/workflows/ @{{OWNER}} -Trustfile.a2ml @{{OWNER}} -.machine_readable/ @{{OWNER}} +SECURITY.md @hyperpolymath +.github/workflows/ @hyperpolymath +Trustfile.a2ml @hyperpolymath +.machine_readable/ @hyperpolymath diff --git a/panel-clades/CODE_OF_CONDUCT.md b/panel-clades/CODE_OF_CONDUCT.md index 2487fd31..56d05e14 100644 --- a/panel-clades/CODE_OF_CONDUCT.md +++ b/panel-clades/CODE_OF_CONDUCT.md @@ -8,7 +8,7 @@ Replace all panel-clades values: Panll - Your project name hyperpolymath - GitHub/GitLab username or org panll - Repository name - {{CONDUCT_EMAIL}} - Email for conduct reports + j.d.a.jewell@open.ac.uk - Email for conduct reports {{CONDUCT_TEAM}} - Name of conduct team/committee {{RESPONSE_TIME}} - Initial response SLA (e.g., 48 hours) 2026 - Current year @@ -136,7 +136,7 @@ If you experience or witness unacceptable behaviour, or have any other concerns, | Method | Details | Best For | |--------|---------|----------| -| **Email** | {{CONDUCT_EMAIL}} | Detailed reports, sensitive matters | +| **Email** | j.d.a.jewell@open.ac.uk | Detailed reports, sensitive matters | | **Private Message** | Contact any maintainer directly | Quick questions, minor issues | | **Anonymous Form** | [Link to form if available] | When you need anonymity | @@ -231,7 +231,7 @@ For contributors with elevated access (Perimeter 2 or 1): If you believe an enforcement decision was made in error: 1. **Wait 7 days** after the decision (cooling-off period) -2. **Email** {{CONDUCT_EMAIL}} with subject line "Appeal: [Original Report ID]" +2. **Email** j.d.a.jewell@open.ac.uk with subject line "Appeal: [Original Report ID]" 3. **Explain** why you believe the decision should be reconsidered 4. **Provide** any new information not previously available @@ -311,7 +311,7 @@ We thank these communities for their leadership in creating welcoming spaces. If you have questions about this Code of Conduct: - Open a [Discussion](https://github.com/hyperpolymath/panll/discussions) (for general questions) -- Email {{CONDUCT_EMAIL}} (for private questions) +- Email j.d.a.jewell@open.ac.uk (for private questions) - Contact any maintainer directly --- diff --git a/panel-clades/Containerfile b/panel-clades/Containerfile index d7266bc0..806aae3f 100644 --- a/panel-clades/Containerfile +++ b/panel-clades/Containerfile @@ -1,7 +1,7 @@ # SPDX-License-Identifier: MPL-2.0 -# Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) # -# Containerfile for {{PROJECT_NAME}} +# Containerfile for PanLL eNSAID # Build: podman build -t {{project}}:latest -f Containerfile . # Run: podman run --rm -it {{project}}:latest # Seal: selur seal {{project}}:latest diff --git a/panel-clades/Justfile b/panel-clades/Justfile index cfea27b7..6b10f313 100644 --- a/panel-clades/Justfile +++ b/panel-clades/Justfile @@ -499,8 +499,8 @@ container-init: read -rp "Primary port [8080]: " _PORT PORT="${_PORT:-8080}" - read -rp "Container registry [ghcr.io/${OWNER:-{{OWNER}}}]: " _REGISTRY - REGISTRY="${_REGISTRY:-ghcr.io/${OWNER:-{{OWNER}}}}" + read -rp "Container registry [ghcr.io/${OWNER:-hyperpolymath}]: " _REGISTRY + REGISTRY="${_REGISTRY:-ghcr.io/${OWNER:-hyperpolymath}}" echo "" echo " Service: $SERVICE_NAME" @@ -823,7 +823,7 @@ test-matrix suite="unit" verbosity="normal" parallel="true": @echo "Test matrix: suite={{suite}} verbosity={{verbosity}} parallel={{parallel}}" # Container matrix: [build|run|push|shell|scan] x [registry] x [tag] -container-matrix action="build" registry="ghcr.io/{{OWNER}}" tag="latest": +container-matrix action="build" registry="ghcr.io/hyperpolymath" tag="latest": @echo "Container matrix: action={{action}} registry={{registry}} tag={{tag}}" # CI matrix: [lint|test|build|security|all] x [quick|full] diff --git a/panel-clades/MAINTAINERS b/panel-clades/MAINTAINERS index 145c4e96..63989c71 100644 --- a/panel-clades/MAINTAINERS +++ b/panel-clades/MAINTAINERS @@ -4,7 +4,7 @@ # Format: Name (role) # Replace placeholders with actual maintainer information. -{{AUTHOR}} <{{AUTHOR_EMAIL}}> (Lead Maintainer) +Jonathan D.A. Jewell (Lead Maintainer) # Additional maintainers: # Name (role) diff --git a/panel-clades/PLACEHOLDERS.md b/panel-clades/PLACEHOLDERS.md index 57dd4ac2..bbd5ce48 100644 --- a/panel-clades/PLACEHOLDERS.md +++ b/panel-clades/PLACEHOLDERS.md @@ -71,7 +71,7 @@ sed -i "s/2026-03-16/$(date +%Y-%m-%d)/g" $(grep -rl '2026-03-16' .) | `[PGP fingerprint not set]` | 40-char PGP fingerprint | `ABCD 1234 ...` | SECURITY.md | | `{{PGP_KEY_URL}}` | URL to public PGP key | `https://keys.openpgp.org/...` | SECURITY.md | | `{{WEBSITE}}` | Project website | `https://example.org` | SECURITY.md | -| `{{CONDUCT_EMAIL}}` | Conduct reports email | `conduct@example.org` | CODE_OF_CONDUCT.md | +| `j.d.a.jewell@open.ac.uk` | Conduct reports email | `conduct@example.org` | CODE_OF_CONDUCT.md | | `{{CONDUCT_TEAM}}` | Conduct committee name | `Code of Conduct Committee` | CODE_OF_CONDUCT.md | | `{{RESPONSE_TIME}}` | SLA for initial response | `48 hours` | CODE_OF_CONDUCT.md | diff --git a/panel-clades/container/Containerfile b/panel-clades/container/Containerfile index ba85260a..aeae05b8 100644 --- a/panel-clades/container/Containerfile +++ b/panel-clades/container/Containerfile @@ -1,5 +1,5 @@ # SPDX-License-Identifier: MPL-2.0 -# {{PROJECT_NAME}} Container Image +# PanLL eNSAID Container Image # # Multi-stage build template for Chainguard Wolfi base images. # Customise the builder stage for your language and copy the @@ -69,13 +69,13 @@ COPY . . FROM cgr.dev/chainguard/wolfi-base:latest # OCI image labels (compatible with cerro-torre .ctp bundle metadata) -LABEL org.opencontainers.image.title="{{PROJECT_NAME}}" \ +LABEL org.opencontainers.image.title="PanLL eNSAID" \ org.opencontainers.image.description="{{PROJECT_DESCRIPTION}}" \ - org.opencontainers.image.url="https://{{FORGE}}/{{OWNER}}/{{REPO}}" \ - org.opencontainers.image.source="https://{{FORGE}}/{{OWNER}}/{{REPO}}" \ - org.opencontainers.image.vendor="{{OWNER}}" \ + org.opencontainers.image.url="https://github.com/hyperpolymath/panll" \ + org.opencontainers.image.source="https://github.com/hyperpolymath/panll" \ + org.opencontainers.image.vendor="hyperpolymath" \ org.opencontainers.image.licenses="{{LICENSE}}" \ - org.opencontainers.image.authors="{{AUTHOR}} <{{AUTHOR_EMAIL}}>" \ + org.opencontainers.image.authors="Jonathan D.A. Jewell " \ dev.cerrotorre.manifest="container/manifest.toml" \ dev.cerrotorre.gatekeeper="container/.gatekeeper.yaml" \ dev.stapeln.compose="container/compose.toml" diff --git a/panel-clades/container/ct-build.sh b/panel-clades/container/ct-build.sh index a54a5418..e568e1cd 100755 --- a/panel-clades/container/ct-build.sh +++ b/panel-clades/container/ct-build.sh @@ -1,7 +1,7 @@ #!/usr/bin/env bash # SPDX-License-Identifier: MPL-2.0 # -# {{PROJECT_NAME}} — Cerro Torre build, sign, and verify pipeline +# PanLL eNSAID — Cerro Torre build, sign, and verify pipeline # # Builds the container image, packages it as a verified .ctp bundle, # signs it with Ed25519, and verifies the result. Gracefully degrades @@ -46,7 +46,7 @@ IMAGE_NAME="{{SERVICE_NAME}}" FULL_IMAGE="${CT_REGISTRY}/${IMAGE_NAME}:${CT_TAG}" CTP_FILE="${SCRIPT_DIR}/${IMAGE_NAME}-${CT_TAG}.ctp" -echo "=== {{PROJECT_NAME}} Cerro Torre Build Pipeline ===" +echo "=== PanLL eNSAID Cerro Torre Build Pipeline ===" echo " Image: ${FULL_IMAGE}" echo " Key: ${CT_KEY_ID}" echo " Bundle: ${CTP_FILE}" diff --git a/panel-clades/container/deploy.k9.ncl b/panel-clades/container/deploy.k9.ncl index 0ad0d04a..d7b682dd 100644 --- a/panel-clades/container/deploy.k9.ncl +++ b/panel-clades/container/deploy.k9.ncl @@ -1,5 +1,5 @@ # SPDX-License-Identifier: MPL-2.0 -# deploy.k9.ncl — {{PROJECT_NAME}} deployment component (Hunt level) +# deploy.k9.ncl — PanLL eNSAID deployment component (Hunt level) # # k9-svc deployment specification with full pedigree (L1-L5). # Security Level: 'Hunt (requires cryptographic handshake for execution). @@ -22,7 +22,7 @@ let component_pedigree = { version = "{{VERSION}}", breed = "application/vnd.k9+nickel", magic_number = "K9!", - description = "{{PROJECT_NAME}} deployment component (Hunt level)", + description = "PanLL eNSAID deployment component (Hunt level)", }, # ───────────────────────────────────────────────────────────── diff --git a/panel-clades/container/entrypoint.sh b/panel-clades/container/entrypoint.sh index a7a03699..4140674d 100755 --- a/panel-clades/container/entrypoint.sh +++ b/panel-clades/container/entrypoint.sh @@ -1,6 +1,6 @@ #!/bin/sh # SPDX-License-Identifier: MPL-2.0 -# {{PROJECT_NAME}} container entrypoint +# PanLL eNSAID container entrypoint # # Handles signal propagation, startup logging, and health check # preparation before exec-ing into the main application process. diff --git a/panel-clades/ffi/zig/build.zig b/panel-clades/ffi/zig/build.zig index 0e0c3766..58c6534a 100644 --- a/panel-clades/ffi/zig/build.zig +++ b/panel-clades/ffi/zig/build.zig @@ -1,4 +1,4 @@ -// {{PROJECT}} FFI Build Configuration +// PANLL FFI Build Configuration // SPDX-License-Identifier: MPL-2.0 const std = @import("std"); diff --git a/panel-clades/ffi/zig/test/integration_test.zig b/panel-clades/ffi/zig/test/integration_test.zig index f163c779..45d194f1 100644 --- a/panel-clades/ffi/zig/test/integration_test.zig +++ b/panel-clades/ffi/zig/test/integration_test.zig @@ -1,4 +1,4 @@ -// {{PROJECT}} Integration Tests +// PANLL Integration Tests // SPDX-License-Identifier: MPL-2.0 // // These tests verify that the Zig FFI correctly implements the Idris2 ABI diff --git a/panel-clades/flake.nix b/panel-clades/flake.nix index df7a0a59..68f86e73 100644 --- a/panel-clades/flake.nix +++ b/panel-clades/flake.nix @@ -1,7 +1,7 @@ # SPDX-License-Identifier: MPL-2.0 -# Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} ({{OWNER}}) <{{AUTHOR_EMAIL}}> +# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) # -# Nix flake for {{PROJECT_NAME}} +# Nix flake for PanLL eNSAID # # NOTE: guix.scm is the PRIMARY development environment. This flake is provided # as a FALLBACK for contributors who use Nix instead of Guix. The .envrc checks @@ -16,10 +16,10 @@ # With direnv (.envrc already configured): # direnv allow # Auto-enters shell on cd # -# TODO: Replace {{PROJECT_NAME}} and {{PROJECT_DESCRIPTION}} with actual values. +# TODO: Replace PanLL eNSAID and {{PROJECT_DESCRIPTION}} with actual values. { - description = "{{PROJECT_NAME}} — RSR-compliant project"; + description = "PanLL eNSAID — RSR-compliant project"; inputs = { nixpkgs.url = "github:NixOS/nixpkgs/nixpkgs-unstable"; @@ -92,19 +92,19 @@ # Development shell — `nix develop` # --------------------------------------------------------------- devShells.default = pkgs.mkShell { - name = "{{PROJECT_NAME}}-dev"; + name = "PanLL eNSAID-dev"; buildInputs = commonTools ++ languageTools; # Environment variables available inside the shell. env = { - PROJECT_NAME = "{{PROJECT_NAME}}"; + PROJECT_NAME = "PanLL eNSAID"; RSR_TIER = "infrastructure"; }; shellHook = '' echo "" - echo " {{PROJECT_NAME}} — development shell" + echo " PanLL eNSAID — development shell" echo " Nix: $(nix --version 2>/dev/null || echo 'unknown')" echo " Just: $(just --version 2>/dev/null || echo 'not found')" echo "" @@ -116,7 +116,7 @@ # consistent whether you enter via 'nix develop' or 'direnv allow'. if [ -z "''${DIRENV_IN_ENVRC:-}" ] && [ -f .envrc ]; then # Only source the non-nix parts to avoid recursion. - export PROJECT_NAME="{{PROJECT_NAME}}" + export PROJECT_NAME="PanLL eNSAID" export RSR_TIER="infrastructure" if [ -f .env ]; then set -a @@ -131,7 +131,7 @@ # Package — `nix build` # --------------------------------------------------------------- packages.default = pkgs.stdenv.mkDerivation { - pname = "{{PROJECT_NAME}}"; + pname = "PanLL eNSAID"; version = "0.1.0"; src = self; @@ -149,7 +149,7 @@ # buildPhase = "zig build -Doptimize=ReleaseSafe"; buildPhase = '' - echo "TODO: Add build commands for {{PROJECT_NAME}}" + echo "TODO: Add build commands for PanLL eNSAID" ''; installPhase = '' @@ -159,7 +159,7 @@ meta = with pkgs.lib; { description = "{{PROJECT_DESCRIPTION}}"; - homepage = "https://github.com/{{OWNER}}/{{PROJECT_NAME}}"; + homepage = "https://github.com/hyperpolymath/PanLL eNSAID"; license = licenses.mpl20; # MPL-2.0 extends MPL-2.0 maintainers = []; platforms = [ "x86_64-linux" "aarch64-linux" ]; From 7e1eed2ba10f61e80a7868b43dfe3610c2de8045 Mon Sep 17 00:00:00 2001 From: "Jonathan D.A. Jewell" <6759885+hyperpolymath@users.noreply.github.com> Date: Wed, 5 Aug 2026 14:09:15 +0100 Subject: [PATCH 2/3] =?UTF-8?q?fix:=20restore=20{{PROJECT}}=20in=20reject-?= =?UTF-8?q?if-contains=20=E2=80=94=20it=20is=20a=20detector,=20not=20a=20v?= =?UTF-8?q?alue?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit The estate top-up sweep substituted {{PROJECT}} here along with every other token. This line is a DETECTOR list: the comment above it says these rules detect corrupt/template/stale state files, so the tokens named in it are the ones whose PRESENCE means a state file is broken. Substituting it did two things. It blinded the {{PROJECT}} leak detector, and it made the detector reject any state file containing this repo's own uppercased name — the opposite of what the rule is for. Same failure class as a template recipe rewriting the incident record that documents its own bug: substituting tokens inside a thing that is ABOUT tokens. Nothing else in this PR changes. Co-Authored-By: Claude Opus 5 --- .machine_readable/agent_instructions/methodology.a2ml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.machine_readable/agent_instructions/methodology.a2ml b/.machine_readable/agent_instructions/methodology.a2ml index 97dd6b9d..9701e779 100644 --- a/.machine_readable/agent_instructions/methodology.a2ml +++ b/.machine_readable/agent_instructions/methodology.a2ml @@ -101,7 +101,7 @@ constraints = [ # These rules detect corrupt/template/stale state files. [methodology.state-validation] -reject-if-contains = ["{{PLACEHOLDER}}", "PANLL", "rsr-template-repo"] +reject-if-contains = ["{{PLACEHOLDER}}", "{{PROJECT}}", "rsr-template-repo"] reject-if-project-name-mismatch = true staleness-threshold-days = 90 -fallback-files = ["TODO.md", "TODO.adoc", "ROADMAP.adoc", "README.adoc"] +fallback-files = ["TODO.md", "TODO.adoc", "ROADMAP.adoc", "README.adoc"] \ No newline at end of file From 4ff0cb431c80df8ced2ec3758b4b2b918771d74e Mon Sep 17 00:00:00 2001 From: "Jonathan D.A. Jewell" <6759885+hyperpolymath@users.noreply.github.com> Date: Wed, 5 Aug 2026 14:24:02 +0100 Subject: [PATCH 3/3] fix: restore the trailing newline The previous commit on this branch was written by a script that read the file through a shell command substitution. $(...) strips trailing newlines and printf '%s' does not put one back, so the file lost its final newline and the diff showed "\ No newline at end of file". Content is otherwise byte-identical to that commit. Co-Authored-By: Claude Opus 5 --- .machine_readable/agent_instructions/methodology.a2ml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.machine_readable/agent_instructions/methodology.a2ml b/.machine_readable/agent_instructions/methodology.a2ml index 9701e779..754f3571 100644 --- a/.machine_readable/agent_instructions/methodology.a2ml +++ b/.machine_readable/agent_instructions/methodology.a2ml @@ -104,4 +104,4 @@ constraints = [ reject-if-contains = ["{{PLACEHOLDER}}", "{{PROJECT}}", "rsr-template-repo"] reject-if-project-name-mismatch = true staleness-threshold-days = 90 -fallback-files = ["TODO.md", "TODO.adoc", "ROADMAP.adoc", "README.adoc"] \ No newline at end of file +fallback-files = ["TODO.md", "TODO.adoc", "ROADMAP.adoc", "README.adoc"]