diff --git a/.gitignore b/.gitignore index 8376b0d4..216cb2f8 100644 --- a/.gitignore +++ b/.gitignore @@ -2,6 +2,8 @@ ### Java template *.class +db-config.yml +package-lock.json # BlueJ files *.ctxt @@ -37,4 +39,5 @@ node_modules starter-module/src/main/resources/static/* starter-module/build/* starter-module/node/* -base-module/node/* \ No newline at end of file +base-module/node/* +db-config.yml diff --git a/README.md b/README.md index 3e380941..ff7140c3 100644 --- a/README.md +++ b/README.md @@ -1,34 +1,84 @@ -# lamisplus-core-enhancement application -# Run with java version 8. -## Setting up the database -This application uses `postgres` database; create a database on postgres -and set up the database credentials in the application.yml in lamisplus module +# LAMISPlus 2.0 -## Maven setup -Use maven 3 upwards, run **mvn dependency:tree** to resolve java dependencies +## System Requirements -## Starting the website on your local machine -Just start `coreApplication` with the command **mvn spring-boot:run**. -This will start up the website using a local database on port **8080**. or another user defined port. +### Prerequisites to Install +- IDE of choice (IntelliJ, Eclipse, etc.) +- Java 8+ +- PostgreSQL 14+ +- `.m2` folder from Google Drive https://drive.google.com/file/d/17F6wHPADVVaDBabajrM9wABUeB04i6D1/view?usp=sharing -Browsing to http://localhost:8080/login should give you the homepage. +## Run in Development Environment -## Front-end development -When starting on your local machine, you should get instant reloading of all static files. -Simply make a change and refresh the page in your browser. +### How to Install Dependencies +1. Install Java 8+ +2. Install PostgreSQL 14+ +3. Download and replace the system `.m2` folder. +4. Clone the git repository: + ```bash + git clone https://github.com/lamisplus/Core.git + ``` +5. Open the project in your IDE of choice. -All front-end related static files are located in `lamisplus/src/main/resources/static`. +### Update Configuration File +1. Update database access details in `db-config.yml` file. +2. Update other Maven application properties as required. -> WARNING: All files in `src/main/resources` will be packaged and deployed with the website. -> Do not put any files anywhere in that folder if they are not supposed to be deployed! +### Run Build and Install Commands +1. Change the directory to `starter-module`: + ```bash + cd starter-module + ``` +2. Run Frontend Build Command: + ```bash + npm run build + ``` +3. Run Maven clean install: + ```bash + mvn clean install + ``` -### LiveReload integration -The application supports LiveReload. -If you have the plugin in your browser, just activating it on the site should be enough. +## How to Package for Production Environment +1. Run Maven package command: + ```bash + mvn clean package + ``` -### Front end system -The application is built using react native for frontend. +## Launch Packaged JAR File +1. Launch the JAR file: + ```bash + java -jar + ``` +2. Optionally, run with memory allocation: + ```bash + java -jar -Xms4096M -Xmx6144M + ``` -## Troubleshooting -### Resetting the database -Create a database property in the application.yml +## Visit the Application +- Visit the application on a browser at the configured port: + ``` + http://localhost:8080 + ``` + +## Access Swagger Documentation +- Visit the application at: + ``` + http://localhost:8080/swagger-ui.html#/ + ``` + +## Access Application Logs +- Application logs can be accessed in the `application-debug` folder. + +## Authors & Acknowledgments +### Main contributors +- Victor Ajor https://github.com/AJ-DataFI +- Mathew Adegbite https://github.com/mathewade +- Emeka https://github.com/drjavanew +- Abisayo Peter Abiodun https://github.com/Asquarep +- John gichangi https://github.com/gichangi +- Joshua https://github.com/JOSH2019GABRIEL +- Kennedy Kirui https://github.com/kenkirui +- Tyav Barnabas https://github.com/tyavbarnabas + +### Special mentions +- Dr Karim Usman https://github.com/drkusman diff --git a/base-module/pom.xml b/base-module/pom.xml index b65ae5e7..4f4eb9ae 100644 --- a/base-module/pom.xml +++ b/base-module/pom.xml @@ -707,6 +707,21 @@ zip4j 2.11.5 + + + org.ehcache + ehcache + 3.10.8 + + + javax.cache + cache-api + 1.1.1 + + + org.springframework + spring-context-support + diff --git a/base-module/src/main/java/org/lamisplus/modules/base/OtherStartupRunners.java b/base-module/src/main/java/org/lamisplus/modules/base/OtherStartupRunners.java index cae9aab3..8cd42e4b 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/OtherStartupRunners.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/OtherStartupRunners.java @@ -16,6 +16,6 @@ public class OtherStartupRunners { @PostConstruct public void checkForUpdates() { LOG.info("Calling Module Update Service"); - moduleUpdateService.checkForUpdates(); + //moduleUpdateService.checkForUpdates(); } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/configurer/CacheConfig.java b/base-module/src/main/java/org/lamisplus/modules/base/configurer/CacheConfig.java new file mode 100644 index 00000000..deea8115 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/configurer/CacheConfig.java @@ -0,0 +1,88 @@ +package org.lamisplus.modules.base.configurer; + +import org.ehcache.config.CacheConfiguration; +import org.ehcache.config.builders.CacheConfigurationBuilder; +import org.ehcache.config.builders.ExpiryPolicyBuilder; +import org.ehcache.config.builders.ResourcePoolsBuilder; +import org.ehcache.config.units.MemoryUnit; +import org.ehcache.core.config.DefaultConfiguration; +import org.ehcache.expiry.ExpiryPolicy; +import org.ehcache.jsr107.EhcacheCachingProvider; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.cache.CacheManager; +import org.springframework.cache.annotation.EnableCaching; +import org.springframework.cache.jcache.JCacheCacheManager; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; + +import javax.cache.Caching; +import java.time.Duration; +import java.util.Arrays; +import java.util.HashMap; +import java.util.List; +import java.util.Map; + +@Configuration +//@EnableCaching +public class CacheConfig { + @Value("${cache.names:core,module,server_sync,user}") + private List cacheNames; + + @Value("${cache.heap.size:100}") + private int heapSize; + + @Value("${cache.offheap.size:50}") + private int offheapSize; + + @Value("${cache.offheap.unit:MB}") + private String offheapUnit; + + @Value("${cache.expiry.ttl.minutes:1}") + private int ttlMinutes; + + @Value("${cache.expiry.idle.minutes:1}") + private int idleMinutes; + + @Bean + public CacheManager jCacheCacheManager() { + Map> cacheMap = new HashMap<>(); + + // Configure each cache from properties (both explicit configs and names list) + cacheNames.forEach(cacheName -> { + ResourcePoolsBuilder resourcePoolsBuilder = ResourcePoolsBuilder + .heap(heapSize) + .offheap(offheapSize, MemoryUnit.valueOf(offheapUnit)); + + ExpiryPolicy expiryPolicy = createExpiryPolicy( + Duration.ofMinutes(ttlMinutes), + Duration.ofMinutes(idleMinutes) + ); + + CacheConfiguration cacheConfiguration = CacheConfigurationBuilder + .newCacheConfigurationBuilder(Object.class, Object.class, resourcePoolsBuilder) + .withExpiry(expiryPolicy) + .build(); + + cacheMap.put(cacheName.trim(), cacheConfiguration); + }); + + EhcacheCachingProvider ehcacheCachingProvider = + (EhcacheCachingProvider) Caching.getCachingProvider(EhcacheCachingProvider.class.getName()); + + DefaultConfiguration defaultConfiguration = + new DefaultConfiguration(cacheMap, ehcacheCachingProvider.getDefaultClassLoader()); + + javax.cache.CacheManager cacheManager = + ehcacheCachingProvider.getCacheManager(ehcacheCachingProvider.getDefaultURI(), defaultConfiguration); + + return new JCacheCacheManager(cacheManager); + } + + private static ExpiryPolicy createExpiryPolicy(Duration timeToLive, Duration timeToIdle) { + return ExpiryPolicyBuilder + .expiry() + .create(timeToLive) + .access(timeToIdle) + .build(); + } +} \ No newline at end of file diff --git a/base-module/src/main/java/org/lamisplus/modules/base/configurer/WebSocketConfig.java b/base-module/src/main/java/org/lamisplus/modules/base/configurer/WebSocketConfig.java index 88b443eb..56a9c435 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/configurer/WebSocketConfig.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/configurer/WebSocketConfig.java @@ -14,17 +14,17 @@ @EnableWebSocketMessageBroker public class WebSocketConfig implements WebSocketMessageBrokerConfigurer { - @Override - public void configureMessageBroker(MessageBrokerRegistry config) { - config.enableSimpleBroker("/topic"); - config.setApplicationDestinationPrefixes("/topic"); - } - @Override public void registerStompEndpoints(StompEndpointRegistry registry) { registry.addEndpoint("/websocket") .setAllowedOrigins("*") .withSockJS(); } + + @Override + public void configureMessageBroker(MessageBrokerRegistry config) { + config.setApplicationDestinationPrefixes("/app"); + config.enableSimpleBroker("/topic"); + } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/controller/ApplicationCodeSetController.java b/base-module/src/main/java/org/lamisplus/modules/base/controller/ApplicationCodeSetController.java index 8635cbeb..dd57e167 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/controller/ApplicationCodeSetController.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/controller/ApplicationCodeSetController.java @@ -4,6 +4,7 @@ import lombok.RequiredArgsConstructor; import lombok.extern.slf4j.Slf4j; import org.lamisplus.modules.base.domain.dto.ApplicationCodesetDTO; +import org.lamisplus.modules.base.domain.dto.CodeSetDTO; import org.lamisplus.modules.base.domain.entities.ApplicationCodeSet; import org.lamisplus.modules.base.service.ApplicationCodesetService; import org.springframework.http.HttpStatus; @@ -16,6 +17,7 @@ import javax.validation.Valid; import java.io.IOException; import java.util.List; +import java.util.Map; @RestController @Slf4j @@ -107,4 +109,11 @@ public ResponseEntity uploadCodesetFile(@RequestParam("file") MultipartF throw new RuntimeException("Error occurred while processing the file: " + e.getMessage()); } } + + @GetMapping(BASE_URL_VERSION_ONE+ "/v2/codeSets") + public ResponseEntity>> getCodeSets( + @RequestParam List codes + ){ + return ResponseEntity.ok(applicationCodesetService.getMultipleCodeSets(codes)); + } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/controller/ChartController.java b/base-module/src/main/java/org/lamisplus/modules/base/controller/ChartController.java new file mode 100644 index 00000000..bb1916c2 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/controller/ChartController.java @@ -0,0 +1,201 @@ +package org.lamisplus.modules.base.controller; + + +import lombok.RequiredArgsConstructor; +import lombok.extern.slf4j.Slf4j; +import org.lamisplus.modules.base.domain.dto.*; +import org.lamisplus.modules.base.service.ChartService; +import org.springframework.http.HttpStatus; +import org.springframework.http.ResponseEntity; +import org.springframework.web.bind.annotation.*; +import org.springframework.web.multipart.MultipartFile; + +import javax.servlet.http.HttpServletResponse; +import java.io.IOException; +import java.util.*; +import java.util.stream.Collectors; + +import static org.reflections.Reflections.log; + +@Slf4j +@RestController +@RequestMapping("/api/v1/charts") +@RequiredArgsConstructor +public class ChartController { + + private final ChartService chartService; + +// /** +// * Get indicator names and types by location +// * +// * @param location the location to filter by (required request parameter) +// * @return list of ChartDTO containing indicator name and type +// */ +// @GetMapping("/indicators") +// public ResponseEntity> getIndicatorsByLocation( +// @RequestParam("location") String location) { +// +// if (location == null || location.trim().isEmpty()) { +// return ResponseEntity.badRequest().build(); +// } +// +// List charts = chartService.getIndicatorNameAndTypeByLocation(location); +// +// if (charts.isEmpty()) { +// return ResponseEntity.ok(new ArrayList<>()); +// } +// +// return ResponseEntity.ok(charts); +// } + + /** + * Get indicator names and types by location + * + * @param location the location to filter by (required request parameter) + * @return list of ChartDTO containing indicator name and type + */ + @GetMapping("/indicators") + public ResponseEntity> getIndicatorsByLocationAndModuleName( + @RequestParam("location") String location) { + + if (location == null || location.trim().isEmpty()) { + return ResponseEntity.badRequest().build(); + } + + List charts = chartService.getIndicatorNameAndTypeByLocation(location); + + if (charts.isEmpty()) { + return ResponseEntity.ok(new ArrayList<>()); + } + + return ResponseEntity.ok(charts); + } + + /** + * Get all chart values for dashboard +// * @param tableName the table name (required request parameter) + * @param indicatorName the indicator name (required request parameter) + * @return list of ChartValueDTO for dashboard display + */ + @GetMapping("/dashboard/values") + public ResponseEntity> getAllChartValuesForDashboard( +// @RequestParam("tableName") String tableName, + @RequestParam("indicatorName") String indicatorName, + @RequestParam("facilityId")Long facilityId) { + + + if (indicatorName == null || indicatorName.trim().isEmpty()) { + return ResponseEntity.badRequest().build(); + } + + try { + ChartValueDTO chartValue = chartService.getChartValueForDashboard(indicatorName, facilityId); + + if (chartValue == null) { + return ResponseEntity.noContent().build(); + } + + return ResponseEntity.ok(chartValue); + + } catch (Exception e) { + // Log the exception + LOG.info("Exception getting chart values for dashboard {}", e.getMessage()); + //TODO: correct this + return ResponseEntity.noContent().build(); + } + } + + + + @PutMapping("/update-chart") + public ResponseEntity updateChart(@RequestParam("indicatorName") String indicatorName, @RequestBody ChartRequestDto chartRequestDto){ + return ResponseEntity.ok(chartService.updateChart(indicatorName, chartRequestDto)); + } + + @DeleteMapping("/delete-chart") + public ResponseEntity deleteChart(@RequestParam("indicatorName") String indicatorName){ + chartService.deleteChart(indicatorName); + return ResponseEntity.ok("Chart deleted successfully."); + } + + @PostMapping("/import-charts") + public ResponseEntity importCharts(@RequestParam("file") MultipartFile file) throws IOException { + if (file.isEmpty()) { + throw new IllegalArgumentException("Please select a file to upload."); + } + try{ + List importedChartData = chartService.importChartData(file); + chartService.saveCharts(importedChartData); + + return ResponseEntity.ok("Charts saved successfully."); + }catch (Exception e){ + LOG.info("Error importing charts: {}", e.getMessage()); + throw new RuntimeException(e); + } + } + + @GetMapping(value = "/export-charts", produces = "application/json; charset=UTF-8") + public void exportCharts(HttpServletResponse response) throws IOException { + response.addHeader("Content-Disposition", "attachment; filename=Charts.json"); + response.setContentType("application/json"); + response.setCharacterEncoding("UTF-8"); + response.setHeader("Content-Type", "application/octet-stream"); + chartService.getChartsFile(response.getOutputStream()); + } + + @GetMapping + public ResponseEntity> getAllCharts(){ + return ResponseEntity.ok(chartService.getAllChartsAsList()); + } + + + + + + + /** + * Get chart data for visualization + */ + @GetMapping("/dashboard/data") + public ResponseEntity> getChartData( + @RequestParam("indicatorName") String indicatorName, + @RequestParam(value = "facilityId", required = false) Long facilityId) { + + try { + ChartValueDTO chartData = chartService.getChartData(indicatorName, facilityId); + return ResponseEntity.ok(chartData); + + } catch (IllegalArgumentException e) { + return ResponseEntity.notFound().build(); + + } catch (Exception e) { + // Build error response using Java 8 compatible methods + Map errorTitleMap = new HashMap<>(); + errorTitleMap.put("text", "Error"); + + SeriesDTO errorSeries = SeriesDTO.builder() + .name("Error") + .data("Failed to execute chart query: " + e.getMessage()) + .build(); + + List errorSeriesList = new ArrayList<>(); + errorSeriesList.add(errorSeries); + + ChartConfigDTO errorConfig = ChartConfigDTO.builder() + .title(errorTitleMap) + .series(errorSeriesList) + .build(); + + ChartValueDTO response = ChartValueDTO.builder() + .indicatorName(indicatorName) + .value(errorConfig) + .build(); + + return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body(response); + } + } + + + + +} \ No newline at end of file diff --git a/base-module/src/main/java/org/lamisplus/modules/base/controller/ModuleController.java b/base-module/src/main/java/org/lamisplus/modules/base/controller/ModuleController.java index fef89a4c..b4ed50b6 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/controller/ModuleController.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/controller/ModuleController.java @@ -16,6 +16,8 @@ import org.lamisplus.modules.base.module.ModuleResponse; import org.lamisplus.modules.base.module.ModuleService; import org.lamisplus.modules.base.service.MenuService; +import org.springframework.cache.annotation.CacheEvict; +import org.springframework.cache.annotation.CachePut; import org.springframework.cache.annotation.Cacheable; import org.springframework.http.ResponseEntity; import org.springframework.security.access.prepost.PreAuthorize; @@ -42,7 +44,6 @@ public class ModuleController { @GetMapping(BASE_URL_VERSION_ONE+"/modules/{id:\\d+}/web-modules") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete','user', 'all_permission')") @Timed - //@PreAuthorize("hasRole(\"" + AuthoritiesConstants.ADMIN + "\")") public List getModulesByType(@PathVariable("id") Long id) { LOG.debug("Getting web modules for module: {}", id); @@ -56,7 +57,6 @@ public List getModulesByType(@PathVariable("id") Long id) { @GetMapping(BASE_URL_VERSION_ONE+"/modules/{id:\\d+}/menus") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete','user', 'all_permission')") @Timed - //@PreAuthorize("hasRole(\"" + AuthoritiesConstants.ADMIN + "\")") public List getModulesMenu(@PathVariable("id") Long id) { LOG.debug("Getting menus for module: {}", id); Module module = new Module(); @@ -119,24 +119,28 @@ public ModuleResponse deactivateModule(@RequestBody Module module) { return moduleService.deactivate(module); } + //@CacheEvict(value = "module") @PostMapping(BASE_URL_VERSION_ONE+"/modules/uninstall") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete', 'all_permission')") public ModuleResponse shutdownModule(@RequestBody Module module, Boolean uninstall) { return moduleService.uninstall(module, uninstall); } + //@CacheEvict(value = "module") @PostMapping(BASE_URL_VERSION_ONE+"/modules/update") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete', 'all_permission')") public ModuleResponse updateModule(@RequestBody Module module) { return moduleService.update(module, false); } + //@CacheEvict(value = "module") @PostMapping(BASE_URL_VERSION_ONE+"/modules/upload") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete', 'all_permission')") public Module uploadModuleData(@RequestParam("file") MultipartFile file) { return moduleService.uploadModuleData(file); } + //@CacheEvict(value = "module") @PostMapping(BASE_URL_VERSION_ONE+ "/modules/install") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete', 'all_permission')") public ModuleResponse installModule(final @RequestBody Module module, @RequestParam Boolean install) { @@ -251,9 +255,10 @@ public List getMenus() { return menuItems.stream().distinct().collect(Collectors.toList()); } + //@Cacheable(value = "module") @GetMapping(BASE_URL_VERSION_ONE + "/modules/installed") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete','user', 'all_permission')") - @Cacheable(cacheNames = "modules") + //@Cacheable(cacheNames = "modules") public List getModules() { LOG.debug("Get all installed modules"); return moduleRepository.findAll().stream() @@ -281,4 +286,26 @@ public ResponseEntity> updateModuleMenu(@PathVariable Long id, @Reque public Boolean exist(@RequestParam String moduleName) { return this.moduleService.exist(moduleName); } + + /** + * Get all module names + * @return List of module names + */ + //@Cacheable(value = "module") + @GetMapping("/names") + public ResponseEntity> getModuleNames() { + List moduleNames = moduleService.getAllModuleNames(); + return ResponseEntity.ok(moduleNames); + } + + /** + * Get only active module names + * @return List of active module names + */ + //@Cacheable(value = "module") + @GetMapping("/names/active") + public ResponseEntity> getActiveModuleNames() { + List activeModuleNames = moduleService.getActiveModuleNames(); + return ResponseEntity.ok(activeModuleNames); + } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/controller/OrganisationUnitController.java b/base-module/src/main/java/org/lamisplus/modules/base/controller/OrganisationUnitController.java index 99650033..eee502ab 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/controller/OrganisationUnitController.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/controller/OrganisationUnitController.java @@ -3,6 +3,7 @@ import lombok.RequiredArgsConstructor; import lombok.extern.slf4j.Slf4j; import org.lamisplus.modules.base.domain.dto.OrganisationUnitDTO; +import org.lamisplus.modules.base.domain.dto.OrganisationUnitIdentifierDto; import org.lamisplus.modules.base.domain.entities.OrganisationUnit; import org.lamisplus.modules.base.service.OrganisationUnitService; import org.lamisplus.modules.base.util.PaginationUtil; @@ -94,4 +95,12 @@ public ResponseEntity delete(@PathVariable Long id) { public ResponseEntity getAll() { return ResponseEntity.ok(this.organisationUnitService.getAll()); }*/ + + @GetMapping(BASE_URL_VERSION_ONE + "/search") + @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete','user', 'all_permission')") + public ResponseEntity> searchOrganizationUnit( + @RequestParam(value = "search", defaultValue = "*") String search, @PageableDefault(page = 0, size = 10) Pageable pageable + ) { + return ResponseEntity.ok(organisationUnitService.searchOrganizationUnit(search, pageable)); + } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/controller/RestExceptionHandler.java b/base-module/src/main/java/org/lamisplus/modules/base/controller/RestExceptionHandler.java index b581c1db..4910eb03 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/controller/RestExceptionHandler.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/controller/RestExceptionHandler.java @@ -1,331 +1,331 @@ -package org.lamisplus.modules.base.controller; - -import com.foreach.across.core.annotations.Exposed; -import lombok.extern.slf4j.Slf4j; -import org.apache.catalina.connector.ClientAbortException; -import org.hibernate.exception.ConstraintViolationException; -import org.lamisplus.modules.base.controller.apierror.*; -import org.springframework.core.Ordered; -import org.springframework.core.annotation.Order; -import org.springframework.dao.DataIntegrityViolationException; -import org.springframework.http.HttpHeaders; -import org.springframework.http.HttpStatus; -import org.springframework.http.ResponseEntity; -import org.springframework.http.converter.HttpMessageNotReadableException; -import org.springframework.http.converter.HttpMessageNotWritableException; -import org.springframework.web.HttpMediaTypeNotSupportedException; -import org.springframework.web.bind.MethodArgumentNotValidException; -import org.springframework.web.bind.MissingServletRequestParameterException; -import org.springframework.web.bind.annotation.ControllerAdvice; -import org.springframework.web.bind.annotation.ExceptionHandler; -import org.springframework.web.bind.annotation.ResponseStatus; -import org.springframework.web.client.HttpClientErrorException; -import org.springframework.web.context.request.ServletWebRequest; -import org.springframework.web.context.request.WebRequest; -import org.springframework.web.method.annotation.MethodArgumentTypeMismatchException; -import org.springframework.web.multipart.MaxUploadSizeExceededException; -import org.springframework.web.servlet.NoHandlerFoundException; -import org.springframework.web.servlet.mvc.method.annotation.ResponseEntityExceptionHandler; - -import javax.servlet.http.HttpServletRequest; -import java.util.NoSuchElementException; - -import static org.springframework.http.HttpStatus.*; - -@Order(Ordered.HIGHEST_PRECEDENCE) -@ControllerAdvice -@Slf4j -@Exposed -public class RestExceptionHandler extends ResponseEntityExceptionHandler { - - /** - * Handle MissingServletRequestParameterException. Triggered when a 'required' request parameter is missing. - * - * @param ex MissingServletRequestParameterException - * @param headers HttpHeaders - * @param status HttpStatus - * @param request WebRequest - * @return the ApiError object - */ - @Override - protected ResponseEntity handleMissingServletRequestParameter( - MissingServletRequestParameterException ex, HttpHeaders headers, - HttpStatus status, WebRequest request) { - String error = ex.getParameterName() + " parameter is missing"; - return buildResponseEntity(new ApiError(BAD_REQUEST, error, ex)); - } - - @ExceptionHandler(MaxUploadSizeExceededException.class) - public ResponseEntity handleMaxSizeException(MaxUploadSizeExceededException exc) { - String error = "One or more files are too large!"; - return buildResponseEntity(new ApiError(HttpStatus.EXPECTATION_FAILED, error, exc)); - } - - - /** - * Handle HttpMediaTypeNotSupportedException. This one triggers when JSON is invalid as well. - * - * @param ex HttpMediaTypeNotSupportedException - * @param headers HttpHeaders - * @param status HttpStatus - * @param request WebRequest - * @return the ApiError object - */ - @Override - protected ResponseEntity handleHttpMediaTypeNotSupported( - HttpMediaTypeNotSupportedException ex, - HttpHeaders headers, - HttpStatus status, - WebRequest request) { - StringBuilder builder = new StringBuilder(); - builder.append(ex.getContentType()); - builder.append(" media type is not supported. Supported media types are "); - ex.getSupportedMediaTypes().forEach(t -> builder.append(t).append(", ")); - return buildResponseEntity(new ApiError(HttpStatus.UNSUPPORTED_MEDIA_TYPE, builder.substring(0, builder.length() - 2), ex)); - } - - /** - * Handle MethodArgumentNotValidException. Triggered when an object fails @Valid validation. - * - * @param ex the MethodArgumentNotValidException that is thrown when @Valid validation fails - * @param headers HttpHeaders - * @param status HttpStatus - * @param request WebRequest - * @return the ApiError object - * RecordExistException - */ - @Override - protected ResponseEntity handleMethodArgumentNotValid( - MethodArgumentNotValidException ex, - HttpHeaders headers, - HttpStatus status, - WebRequest request) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setMessage("Validation error"); - apiError.addValidationErrors(ex.getBindingResult().getFieldErrors()); - apiError.addValidationError(ex.getBindingResult().getGlobalErrors()); - return buildResponseEntity(apiError); - } - - /** - * Handles javax.validation.ConstraintViolationException. Thrown when @Validated fails. - * - * @param ex the ConstraintViolationException - * @return the ApiError object - */ - @ExceptionHandler(javax.validation.ConstraintViolationException.class) - protected ResponseEntity handleConstraintViolation( - javax.validation.ConstraintViolationException ex) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setMessage("Validation error"); - apiError.addValidationErrors(ex.getConstraintViolations()); - return buildResponseEntity(apiError); - } - - /** - * Handles RecordExistException. Created to encapsulate errors with more detail than javax.persistence.EntityNotFoundException. - * - * @param ex the RecordExistException - * @return the ApiError object - */ - @ExceptionHandler(RecordExistException.class) - protected ResponseEntity handleRecordExist( - RecordExistException ex) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setStatusCode(BAD_REQUEST.value()); - apiError.setMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - /** - * Handles AccessDeniedException. - * - * @param ex the AccessDeniedException - * @return the ApiError object - */ - @ExceptionHandler(AccessDeniedException.class) - protected ResponseEntity handleADeniedException( - AccessDeniedException ex) { - ApiError apiError = new ApiError(FORBIDDEN); - apiError.setStatusCode(FORBIDDEN.value()); - apiError.setMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - /** - * Handles IllegalTypeException. - * - * @param ex the IllegalTypeException - * @return the ApiError object - */ - @ExceptionHandler(IllegalTypeException.class) - protected ResponseEntity handleIllegalTypeException(IllegalTypeException ex) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setStatusCode(BAD_REQUEST.value()); - apiError.setMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - /* Handles EntityNotFoundException. Created to encapsulate errors with more detail than javax.persistence.EntityNotFoundException. - * @param ex the EntityNotFoundException - * @return the ApiError object - */ - @ExceptionHandler({EntityNotFoundException.class,NoSuchElementException.class, NullPointerException.class}) - protected ResponseEntity handleNotFound( - Exception ex) { - ApiError apiError = new ApiError(NOT_FOUND); - apiError.setStatusCode(NOT_FOUND.value()); - apiError.setMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - - /** - * Handle HttpMessageNotReadableException. Happens when request JSON is malformed. - * - * @param ex HttpMessageNotReadableException - * @param headers HttpHeaders - * @param status HttpStatus - * @param request WebRequest - * @return the ApiError object - */ - @Override - protected ResponseEntity handleHttpMessageNotReadable(HttpMessageNotReadableException ex, HttpHeaders headers, HttpStatus status, WebRequest request) { - ServletWebRequest servletWebRequest = (ServletWebRequest) request; - LOG.info("{} to {}", servletWebRequest.getHttpMethod(), servletWebRequest.getRequest().getServletPath()); - String error = "Malformed JSON request"; - return buildResponseEntity(new ApiError(HttpStatus.BAD_REQUEST, error, ex)); - } - - /** - * Handle HttpMessageNotWritableException. - * - * @param ex HttpMessageNotWritableException - * @param headers HttpHeaders - * @param status HttpStatus - * @param request WebRequest - * @return the ApiError object - */ - @Override - protected ResponseEntity handleHttpMessageNotWritable(HttpMessageNotWritableException ex, HttpHeaders headers, HttpStatus status, WebRequest request) { - String error = "Error writing JSON output"; - return buildResponseEntity(new ApiError(INTERNAL_SERVER_ERROR, error, ex)); - } - - /** - * Handle NoHandlerFoundException. - * - * @param ex - * @param headers - * @param status - * @param request - * @return - */ - @Override - protected ResponseEntity handleNoHandlerFoundException( - NoHandlerFoundException ex, HttpHeaders headers, HttpStatus status, WebRequest request) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setMessage(String.format("Could not find the %s method for URL %s", ex.getHttpMethod(), ex.getRequestURL())); - apiError.setDebugMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - /** - * Handle javax.persistence.EntityNotFoundException - */ - @ExceptionHandler(javax.persistence.EntityNotFoundException.class) - protected ResponseEntity handleEntityNotFound(javax.persistence.EntityNotFoundException ex) { - return buildResponseEntity(new ApiError(HttpStatus.NOT_FOUND, ex)); - } - - /** - * Handle java.lang.IllegalArgumentException - */ - @ExceptionHandler(java.lang.IllegalArgumentException.class) - protected ResponseEntity IllegalArgumentException(java.lang.IllegalArgumentException ex) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setStatusCode(BAD_REQUEST.value()); - apiError.setMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - /** - * Handle DataIntegrityViolationException, inspects the cause for different DB causes. - * - * @param ex the DataIntegrityViolationException - * @return the ApiError object - */ - @ExceptionHandler(DataIntegrityViolationException.class) - protected ResponseEntity handleDataIntegrityViolation(DataIntegrityViolationException ex, - WebRequest request) { - if (ex.getCause() instanceof ConstraintViolationException) { - return buildResponseEntity(new ApiError(HttpStatus.CONFLICT, "Database error - " + ex.getMessage(), ex.getCause())); - } - return buildResponseEntity(new ApiError(INTERNAL_SERVER_ERROR, ex)); - } - - /** - * Handle Generic Exceptions. - * - * @param ex the Exception - * @return the ApiError object - */ - @ExceptionHandler(Exception.class) - @ResponseStatus(HttpStatus.INTERNAL_SERVER_ERROR) - public ResponseEntity handleGenericException(Exception ex) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setStatusCode(BAD_REQUEST.value()); - apiError.setMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - /** - * Handle ClientAbortException, thrown when client aborts request - * - * @param ex the ClientAbortException - * @return the ApiError object - */ - @ExceptionHandler(ClientAbortException.class) - public ResponseEntity clientAbortExceptionHandler(HttpServletRequest request, ClientAbortException ex) { - LOG.warn("ClientAbortException: message={}", ex.getMessage()); - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setStatusCode(BAD_REQUEST.value()); - apiError.setMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - /** - * Handle HttpClientErrorException, thrown when client aborts request - * - * @param ex the HttpClientErrorException - * @return the ApiError object - */ - @ExceptionHandler(HttpClientErrorException.class) - public ResponseEntity handleHttpClientErrorException( - HttpClientErrorException ex) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setStatusCode(BAD_REQUEST.value()); - apiError.setMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - /** - * Handle Exception, handle generic Exception.class - * - * @param ex the Exception - * @return the ApiError object - */ - @ExceptionHandler(MethodArgumentTypeMismatchException.class) - protected ResponseEntity handleMethodArgumentTypeMismatch(MethodArgumentTypeMismatchException ex, - WebRequest request) { - ApiError apiError = new ApiError(BAD_REQUEST); - apiError.setMessage(String.format("The parameter '%s' of value '%s' could not be converted to type '%s'", ex.getName(), ex.getValue(), ex.getRequiredType().getSimpleName())); - apiError.setDebugMessage(ex.getMessage()); - return buildResponseEntity(apiError); - } - - private ResponseEntity buildResponseEntity(ApiError apiError) { - LOG.error("Error: {}", apiError); - return new ResponseEntity<>(apiError, apiError.getStatus()); - } - -} +//package org.lamisplus.modules.base.controller; +// +//import com.foreach.across.core.annotations.Exposed; +//import lombok.extern.slf4j.Slf4j; +//import org.apache.catalina.connector.ClientAbortException; +//import org.hibernate.exception.ConstraintViolationException; +//import org.lamisplus.modules.base.controller.apierror.*; +//import org.springframework.core.Ordered; +//import org.springframework.core.annotation.Order; +//import org.springframework.dao.DataIntegrityViolationException; +//import org.springframework.http.HttpHeaders; +//import org.springframework.http.HttpStatus; +//import org.springframework.http.ResponseEntity; +//import org.springframework.http.converter.HttpMessageNotReadableException; +//import org.springframework.http.converter.HttpMessageNotWritableException; +//import org.springframework.web.HttpMediaTypeNotSupportedException; +//import org.springframework.web.bind.MethodArgumentNotValidException; +//import org.springframework.web.bind.MissingServletRequestParameterException; +//import org.springframework.web.bind.annotation.ControllerAdvice; +//import org.springframework.web.bind.annotation.ExceptionHandler; +//import org.springframework.web.bind.annotation.ResponseStatus; +//import org.springframework.web.client.HttpClientErrorException; +//import org.springframework.web.context.request.ServletWebRequest; +//import org.springframework.web.context.request.WebRequest; +//import org.springframework.web.method.annotation.MethodArgumentTypeMismatchException; +//import org.springframework.web.multipart.MaxUploadSizeExceededException; +//import org.springframework.web.servlet.NoHandlerFoundException; +//import org.springframework.web.servlet.mvc.method.annotation.ResponseEntityExceptionHandler; +// +//import javax.servlet.http.HttpServletRequest; +//import java.util.NoSuchElementException; +// +//import static org.springframework.http.HttpStatus.*; +// +//@Order(Ordered.HIGHEST_PRECEDENCE) +//@ControllerAdvice +//@Slf4j +//@Exposed +//public class RestExceptionHandler extends ResponseEntityExceptionHandler { +// +// /** +// * Handle MissingServletRequestParameterException. Triggered when a 'required' request parameter is missing. +// * +// * @param ex MissingServletRequestParameterException +// * @param headers HttpHeaders +// * @param status HttpStatus +// * @param request WebRequest +// * @return the ApiError object +// */ +// @Override +// protected ResponseEntity handleMissingServletRequestParameter( +// MissingServletRequestParameterException ex, HttpHeaders headers, +// HttpStatus status, WebRequest request) { +// String error = ex.getParameterName() + " parameter is missing"; +// return buildResponseEntity(new ApiError(BAD_REQUEST, error, ex)); +// } +// +// @ExceptionHandler(MaxUploadSizeExceededException.class) +// public ResponseEntity handleMaxSizeException(MaxUploadSizeExceededException exc) { +// String error = "One or more files are too large!"; +// return buildResponseEntity(new ApiError(HttpStatus.EXPECTATION_FAILED, error, exc)); +// } +// +// +// /** +// * Handle HttpMediaTypeNotSupportedException. This one triggers when JSON is invalid as well. +// * +// * @param ex HttpMediaTypeNotSupportedException +// * @param headers HttpHeaders +// * @param status HttpStatus +// * @param request WebRequest +// * @return the ApiError object +// */ +// @Override +// protected ResponseEntity handleHttpMediaTypeNotSupported( +// HttpMediaTypeNotSupportedException ex, +// HttpHeaders headers, +// HttpStatus status, +// WebRequest request) { +// StringBuilder builder = new StringBuilder(); +// builder.append(ex.getContentType()); +// builder.append(" media type is not supported. Supported media types are "); +// ex.getSupportedMediaTypes().forEach(t -> builder.append(t).append(", ")); +// return buildResponseEntity(new ApiError(HttpStatus.UNSUPPORTED_MEDIA_TYPE, builder.substring(0, builder.length() - 2), ex)); +// } +// +// /** +// * Handle MethodArgumentNotValidException. Triggered when an object fails @Valid validation. +// * +// * @param ex the MethodArgumentNotValidException that is thrown when @Valid validation fails +// * @param headers HttpHeaders +// * @param status HttpStatus +// * @param request WebRequest +// * @return the ApiError object +// * RecordExistException +// */ +// @Override +// protected ResponseEntity handleMethodArgumentNotValid( +// MethodArgumentNotValidException ex, +// HttpHeaders headers, +// HttpStatus status, +// WebRequest request) { +// ApiError apiError = new ApiError(BAD_REQUEST); +// apiError.setMessage("Validation error"); +// apiError.addValidationErrors(ex.getBindingResult().getFieldErrors()); +// apiError.addValidationError(ex.getBindingResult().getGlobalErrors()); +// return buildResponseEntity(apiError); +// } +// +// /** +// * Handles javax.validation.ConstraintViolationException. Thrown when @Validated fails. +// * +// * @param ex the ConstraintViolationException +// * @return the ApiError object +// */ +// @ExceptionHandler(javax.validation.ConstraintViolationException.class) +// protected ResponseEntity handleConstraintViolation( +// javax.validation.ConstraintViolationException ex) { +// ApiError apiError = new ApiError(BAD_REQUEST); +// apiError.setMessage("Validation error"); +// apiError.addValidationErrors(ex.getConstraintViolations()); +// return buildResponseEntity(apiError); +// } +// +// /** +// * Handles RecordExistException. Created to encapsulate errors with more detail than javax.persistence.EntityNotFoundException. +// * +// * @param ex the RecordExistException +// * @return the ApiError object +// */ +// @ExceptionHandler(RecordExistException.class) +// protected ResponseEntity handleRecordExist( +// RecordExistException ex) { +// ApiError apiError = new ApiError(BAD_REQUEST); +// apiError.setStatusCode(BAD_REQUEST.value()); +// apiError.setMessage(ex.getMessage()); +// return buildResponseEntity(apiError); +// } +// +// /** +// * Handles AccessDeniedException. +// * +// * @param ex the AccessDeniedException +// * @return the ApiError object +// */ +// @ExceptionHandler(AccessDeniedException.class) +// protected ResponseEntity handleADeniedException( +// AccessDeniedException ex) { +// ApiError apiError = new ApiError(FORBIDDEN); +// apiError.setStatusCode(FORBIDDEN.value()); +// apiError.setMessage(ex.getMessage()); +// return buildResponseEntity(apiError); +// } +// /** +// * Handles IllegalTypeException. +// * +// * @param ex the IllegalTypeException +// * @return the ApiError object +// */ +// @ExceptionHandler(IllegalTypeException.class) +// protected ResponseEntity handleIllegalTypeException(IllegalTypeException ex) { +// ApiError apiError = new ApiError(BAD_REQUEST); +// apiError.setStatusCode(BAD_REQUEST.value()); +// apiError.setMessage(ex.getMessage()); +// return buildResponseEntity(apiError); +// } +// +// /* Handles EntityNotFoundException. Created to encapsulate errors with more detail than javax.persistence.EntityNotFoundException. +// * @param ex the EntityNotFoundException +// * @return the ApiError object +// */ +// @ExceptionHandler({EntityNotFoundException.class,NoSuchElementException.class, NullPointerException.class}) +// protected ResponseEntity handleNotFound( +// Exception ex) { +// ApiError apiError = new ApiError(NOT_FOUND); +// apiError.setStatusCode(NOT_FOUND.value()); +// apiError.setMessage(ex.getMessage()); +// return buildResponseEntity(apiError); +// } +// +// +// /** +// * Handle HttpMessageNotReadableException. Happens when request JSON is malformed. +// * +// * @param ex HttpMessageNotReadableException +// * @param headers HttpHeaders +// * @param status HttpStatus +// * @param request WebRequest +// * @return the ApiError object +// */ +// @Override +// protected ResponseEntity handleHttpMessageNotReadable(HttpMessageNotReadableException ex, HttpHeaders headers, HttpStatus status, WebRequest request) { +// ServletWebRequest servletWebRequest = (ServletWebRequest) request; +// LOG.info("{} to {}", servletWebRequest.getHttpMethod(), servletWebRequest.getRequest().getServletPath()); +// String error = "Malformed JSON request"; +// return buildResponseEntity(new ApiError(HttpStatus.BAD_REQUEST, error, ex)); +// } +// +// /** +// * Handle HttpMessageNotWritableException. +// * +// * @param ex HttpMessageNotWritableException +// * @param headers HttpHeaders +// * @param status HttpStatus +// * @param request WebRequest +// * @return the ApiError object +// */ +// @Override +// protected ResponseEntity handleHttpMessageNotWritable(HttpMessageNotWritableException ex, HttpHeaders headers, HttpStatus status, WebRequest request) { +// String error = "Error writing JSON output"; +// return buildResponseEntity(new ApiError(INTERNAL_SERVER_ERROR, error, ex)); +// } +// +// /** +// * Handle NoHandlerFoundException. +// * +// * @param ex +// * @param headers +// * @param status +// * @param request +// * @return +// */ +// @Override +// protected ResponseEntity handleNoHandlerFoundException( +// NoHandlerFoundException ex, HttpHeaders headers, HttpStatus status, WebRequest request) { +// ApiError apiError = new ApiError(BAD_REQUEST); +// apiError.setMessage(String.format("Could not find the %s method for URL %s", ex.getHttpMethod(), ex.getRequestURL())); +// apiError.setDebugMessage(ex.getMessage()); +// return buildResponseEntity(apiError); +// } +// +// /** +// * Handle javax.persistence.EntityNotFoundException +// */ +// @ExceptionHandler(javax.persistence.EntityNotFoundException.class) +// protected ResponseEntity handleEntityNotFound(javax.persistence.EntityNotFoundException ex) { +// return buildResponseEntity(new ApiError(HttpStatus.NOT_FOUND, ex)); +// } +// +// /** +// * Handle java.lang.IllegalArgumentException +// */ +// @ExceptionHandler(java.lang.IllegalArgumentException.class) +// protected ResponseEntity IllegalArgumentException(java.lang.IllegalArgumentException ex) { +// ApiError apiError = new ApiError(BAD_REQUEST); +// apiError.setStatusCode(BAD_REQUEST.value()); +// apiError.setMessage(ex.getMessage()); +// return buildResponseEntity(apiError); +// } +// +// /** +// * Handle DataIntegrityViolationException, inspects the cause for different DB causes. +// * +// * @param ex the DataIntegrityViolationException +// * @return the ApiError object +// */ +// @ExceptionHandler(DataIntegrityViolationException.class) +// protected ResponseEntity handleDataIntegrityViolation(DataIntegrityViolationException ex, +// WebRequest request) { +// if (ex.getCause() instanceof ConstraintViolationException) { +// return buildResponseEntity(new ApiError(HttpStatus.CONFLICT, "Database error - " + ex.getMessage(), ex.getCause())); +// } +// return buildResponseEntity(new ApiError(INTERNAL_SERVER_ERROR, ex)); +// } +// +// /** +// * Handle Generic Exceptions. +// * +// * @param ex the Exception +// * @return the ApiError object +// */ +//// @ExceptionHandler(Exception.class) +//// @ResponseStatus(HttpStatus.INTERNAL_SERVER_ERROR) +//// public ResponseEntity handleGenericException(Exception ex) { +//// ApiError apiError = new ApiError(BAD_REQUEST); +//// apiError.setStatusCode(BAD_REQUEST.value()); +//// apiError.setMessage(ex.getMessage()); +//// return buildResponseEntity(apiError); +//// } +// +// /** +// * Handle ClientAbortException, thrown when client aborts request +// * +// * @param ex the ClientAbortException +// * @return the ApiError object +// */ +//// @ExceptionHandler(ClientAbortException.class) +//// public ResponseEntity clientAbortExceptionHandler(HttpServletRequest request, ClientAbortException ex) { +//// LOG.warn("ClientAbortException: message={}", ex.getMessage()); +//// ApiError apiError = new ApiError(BAD_REQUEST); +//// apiError.setStatusCode(BAD_REQUEST.value()); +//// apiError.setMessage(ex.getMessage()); +//// return buildResponseEntity(apiError); +//// } +// +// /** +// * Handle HttpClientErrorException, thrown when client aborts request +// * +// * @param ex the HttpClientErrorException +// * @return the ApiError object +// */ +//// @ExceptionHandler(HttpClientErrorException.class) +//// public ResponseEntity handleHttpClientErrorException( +//// HttpClientErrorException ex) { +//// ApiError apiError = new ApiError(BAD_REQUEST); +//// apiError.setStatusCode(BAD_REQUEST.value()); +//// apiError.setMessage(ex.getMessage()); +//// return buildResponseEntity(apiError); +//// } +// +// /** +// * Handle Exception, handle generic Exception.class +// * +// * @param ex the Exception +// * @return the ApiError object +// */ +// @ExceptionHandler(MethodArgumentTypeMismatchException.class) +// protected ResponseEntity handleMethodArgumentTypeMismatch(MethodArgumentTypeMismatchException ex, +// WebRequest request) { +// ApiError apiError = new ApiError(BAD_REQUEST); +// apiError.setMessage(String.format("The parameter '%s' of value '%s' could not be converted to type '%s'", ex.getName(), ex.getValue(), ex.getRequiredType().getSimpleName())); +// apiError.setDebugMessage(ex.getMessage()); +// return buildResponseEntity(apiError); +// } +// +// private ResponseEntity buildResponseEntity(ApiError apiError) { +// LOG.error("Error: {}", apiError); +// return new ResponseEntity<>(apiError, apiError.getStatus()); +// } +// +//} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/controller/RoleController.java b/base-module/src/main/java/org/lamisplus/modules/base/controller/RoleController.java index d95a0f04..65fb7750 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/controller/RoleController.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/controller/RoleController.java @@ -61,15 +61,17 @@ public void save(@Valid @RequestBody RoleDTO roleDTO) throws Exception { public ResponseEntity update(@Valid @RequestBody RoleDTO role, @PathVariable Long id) { try { Role updatedRole = new Role(); - if (!role.getPermissions().isEmpty()){ - updatedRole = roleService.updatePermissions(id, role.getPermissions()); - } - if (role.getName() != null){ - updatedRole = roleService.updateName(id, role.getName()); - } - if(!role.getMenus().isEmpty()){ - updatedRole = roleService.updateMenus(id, role.getMenus()); - } +// if (!role.getPermissions().isEmpty()){ +// updatedRole = roleService.updatePermissions(id, role.getPermissions()); +// } +// if (role.getName() != null){ +// updatedRole = roleService.updateName(id, role.getName()); +// } +// if(!role.getMenus().isEmpty()){ +// updatedRole = roleService.updateMenus(id, role.getMenus()); +// } + + updatedRole = roleService.updateRole(id, role); return ResponseEntity.ok(updatedRole); } catch (Exception e) { ResponseEntity.status(HttpStatus.BAD_REQUEST); diff --git a/base-module/src/main/java/org/lamisplus/modules/base/controller/UserController.java b/base-module/src/main/java/org/lamisplus/modules/base/controller/UserController.java index 825be1ae..9c033167 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/controller/UserController.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/controller/UserController.java @@ -1,27 +1,20 @@ package org.lamisplus.modules.base.controller; import lombok.RequiredArgsConstructor; -import org.lamisplus.modules.base.controller.apierror.EntityNotFoundException; import org.lamisplus.modules.base.controller.vm.ManagedUserVM; import org.lamisplus.modules.base.domain.dto.FacilitySetupDTO; -import org.lamisplus.modules.base.domain.dto.ManagementDto; import org.lamisplus.modules.base.domain.dto.UserDTO; import org.lamisplus.modules.base.domain.entities.Role; import org.lamisplus.modules.base.domain.entities.User; import org.lamisplus.modules.base.domain.repositories.RoleRepository; import org.lamisplus.modules.base.domain.repositories.UserRepository; import org.lamisplus.modules.base.service.UserService; -import org.lamisplus.modules.base.util.PaginationUtil; -import org.springframework.data.domain.Page; -import org.springframework.data.domain.Pageable; -import org.springframework.http.HttpHeaders; +import org.springframework.cache.annotation.CacheEvict; import org.springframework.http.HttpStatus; import org.springframework.http.ResponseEntity; import org.springframework.security.access.prepost.PreAuthorize; import org.springframework.security.core.session.SessionRegistry; import org.springframework.web.bind.annotation.*; -import org.springframework.web.servlet.support.ServletUriComponentsBuilder; - import javax.validation.Valid; import java.util.HashSet; import java.util.List; @@ -38,12 +31,14 @@ public class UserController { private final String BASE_URL_VERSION_ONE = "/api/v1/users"; + @GetMapping(BASE_URL_VERSION_ONE + "/{id}") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete','user', 'all_permission')") public ResponseEntity get(@PathVariable Long id) { return ResponseEntity.ok(userRepository.findById(id).map(UserDTO::new).get()); } + //@CacheEvict(value = "user") @PostMapping(BASE_URL_VERSION_ONE + "/{id}/roles") @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete', 'all_permission')") public ResponseEntity updateRoles(@Valid @RequestBody List roles, @PathVariable Long id) throws Exception { @@ -71,24 +66,13 @@ public ResponseEntity updateRoles(@Valid @RequestBody List roles } } - - /*@PostMapping("/organisationUnit/{id}") - public ResponseEntity getAllUsers(@PathVariable Long id) { - UserDTO userDTO = userService - .getUserWithRoles() - .map(UserDTO::new) - .orElseThrow(() -> new EntityNotFoundException(User.class, "Not Found", "")); - return ResponseEntity.ok(userService.changeOrganisationUnit(id, userDTO)); - }*/ - @GetMapping("/logged-in/count") public Integer getNumberOfLoggedInUsers() { final List allPrincipals = sessionRegistry.getAllPrincipals(); return allPrincipals.size(); } - - + //@CacheEvict(value = "user") @PostMapping(BASE_URL_VERSION_ONE) @ResponseStatus(HttpStatus.CREATED) @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete', 'all_permission')") @@ -97,6 +81,7 @@ public Long save(@Valid @RequestBody ManagedUserVM managedUserVM) { return userService.save(managedUserVM, managedUserVM.getPassword()).getId(); } + //@CacheEvict(value = "user") @PutMapping(BASE_URL_VERSION_ONE + "/{id}") @ResponseStatus(HttpStatus.CREATED) @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete', 'user','all_permission')") @@ -104,6 +89,7 @@ public void update(@PathVariable Long id, @Valid @RequestBody ManagedUserVM mana userService.update(id, managedUserVM, managedUserVM.getPassword()); } + //@CacheEvict(value = "user") @DeleteMapping(BASE_URL_VERSION_ONE + "/{id}") @ResponseStatus(HttpStatus.CREATED) @PreAuthorize("hasAnyAuthority('admin_write', 'admin_read', 'admin_delete','all_permission')") @@ -111,16 +97,10 @@ public void update(@PathVariable Long id) { userService.delete(id); } -// @GetMapping(BASE_URL_VERSION_ONE) -// public ResponseEntity> getAllUsers(Pageable pageable) { -// final Page page = userService.getAllManagedUsers(pageable); -// HttpHeaders headers = PaginationUtil.generatePaginationHttpHeaders(ServletUriComponentsBuilder.fromCurrentRequest(), page); -// return new ResponseEntity<>(page.getContent(), headers, HttpStatus.OK); -// } + @GetMapping(BASE_URL_VERSION_ONE) public ResponseEntity> getAllUsers() { final List page = userService.getAllManagedUsers(); -// HttpHeaders headers = PaginationUtil.generatePaginationHttpHeaders(ServletUriComponentsBuilder.fromCurrentRequest(), page); return new ResponseEntity<>(page, HttpStatus.OK); } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/CategoricalDataResult.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/CategoricalDataResult.java new file mode 100644 index 00000000..93845280 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/CategoricalDataResult.java @@ -0,0 +1,15 @@ +package org.lamisplus.modules.base.domain.dto; + +import lombok.*; + +import java.util.List; + +@Getter +@Setter +@AllArgsConstructor +@NoArgsConstructor +@Builder +public class CategoricalDataResult { + private SeriesDTO series; + private List categories; +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartConfigDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartConfigDTO.java new file mode 100644 index 00000000..ce4ed18b --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartConfigDTO.java @@ -0,0 +1,23 @@ +package org.lamisplus.modules.base.domain.dto; + +import com.fasterxml.jackson.annotation.JsonProperty; +import lombok.AllArgsConstructor; +import lombok.Builder; +import lombok.Data; +import lombok.NoArgsConstructor; + +import java.util.List; + +@Data +@Builder +@NoArgsConstructor +@AllArgsConstructor +public class ChartConfigDTO { + private Object chart; + private Object title; + @JsonProperty("xAxis") + private Object xAxis; + @JsonProperty("yAxis") + private Object yAxis; + private List series; +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartDTO.java new file mode 100644 index 00000000..c6e05d50 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartDTO.java @@ -0,0 +1,88 @@ +package org.lamisplus.modules.base.domain.dto; + +import lombok.*; +import org.lamisplus.modules.base.domain.entities.Chart; + +import javax.persistence.Column; +import javax.persistence.Id; +import java.io.Serializable; +import java.time.LocalDateTime; +import java.util.UUID; + +@Getter +@Setter +@AllArgsConstructor +@NoArgsConstructor +@EqualsAndHashCode +@Builder +public class ChartDTO implements Serializable { + private String indicatorName; + private String type; +// private String tableName; + private String description; + private String displayName; + private String module; + private String icon; + private Integer position; + private Integer archived; + private UUID id; + private String location; + private String query; + private LocalDateTime createdDate; + private String createdBy; + private LocalDateTime lastModifiedDate; + private String lastModifiedBy; + private String xAxisField; + private String yAxisField; + private String seriesNameField; + + public static ChartDTO fromEntity(Chart chart){ + + return ChartDTO.builder() + .id(chart.getId()) + .indicatorName(chart.getIndicatorName()) + .description(chart.getDescription()) + .displayName(chart.getDisplayName()) + .module(chart.getModule()) + .location(chart.getLocation()) + .type(chart.getType()) + .icon(chart.getIcon()) + .query(chart.getQuery()) + .createdDate(chart.getCreatedDate()) + .createdBy(chart.getCreatedBy()) + .lastModifiedDate(chart.getLastModifiedDate()) + .lastModifiedBy(chart.getLastModifiedBy()) + .archived(chart.getArchived()) + .position(chart.getPosition()) + .xAxisField(chart.getXAxisField()) + .yAxisField(chart.getYAxisField()) + .seriesNameField(chart.getSeriesNameField()) + .build(); + } + + public static ChartDTO fromEntitySafe(Chart chart){ + + return ChartDTO.builder() + .id(chart.getId()) + .indicatorName(chart.getIndicatorName()) + .description(chart.getDescription()) + .displayName(chart.getDisplayName()) + .module(chart.getModule()) + .location(chart.getLocation()) + .type(chart.getType()) + .icon(chart.getIcon()) + .createdDate(chart.getCreatedDate()) + .createdBy(chart.getCreatedBy()) + .lastModifiedDate(chart.getLastModifiedDate()) + .lastModifiedBy(chart.getLastModifiedBy()) + .archived(chart.getArchived()) + .position(chart.getPosition()) + .xAxisField(chart.getXAxisField()) + .yAxisField(chart.getYAxisField()) + .seriesNameField(chart.getSeriesNameField()) + .build(); + } + + + +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartQueryDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartQueryDTO.java new file mode 100644 index 00000000..67ca60e1 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartQueryDTO.java @@ -0,0 +1,14 @@ +package org.lamisplus.modules.base.domain.dto; + +import lombok.*; + +@Getter +@Setter +@Builder +@AllArgsConstructor +@NoArgsConstructor +@EqualsAndHashCode +public class ChartQueryDTO { + private String indicatorName; + private String query; +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartRequestDto.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartRequestDto.java new file mode 100644 index 00000000..29e119e4 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartRequestDto.java @@ -0,0 +1,17 @@ +package org.lamisplus.modules.base.domain.dto; + +import lombok.Data; + +@Data +public class ChartRequestDto { + private String type; + private String module; + private String location; + private String description; + private String displayName; + private String icon; + private Integer position; +// private String query; + + +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartValueDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartValueDTO.java new file mode 100644 index 00000000..2b205a3d --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ChartValueDTO.java @@ -0,0 +1,17 @@ +package org.lamisplus.modules.base.domain.dto; + +import lombok.*; + +import java.io.Serializable; + +@Getter +@Setter +@Builder +@ToString +@AllArgsConstructor +@NoArgsConstructor +@EqualsAndHashCode +public class ChartValueDTO implements Serializable { + private String indicatorName; + private T value; +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/CodeSetDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/CodeSetDTO.java new file mode 100644 index 00000000..9c06bb54 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/CodeSetDTO.java @@ -0,0 +1,37 @@ +package org.lamisplus.modules.base.domain.dto; + +public class CodeSetDTO { + private Long id; + private String code; + private String display; + + public CodeSetDTO(Long id, String code, String display) { + this.id = id; + this.code = code; + this.display = display; + } + + public Long getId() { + return id; + } + + public void setId(Long id) { + this.id = id; + } + + public String getCode() { + return code; + } + + public void setCode(String code) { + this.code = code; + } + + public String getDisplay() { + return display; + } + + public void setDisplay(String display) { + this.display = display; + } +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/MenuDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/MenuDTO.java index 74e20224..bfd2445b 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/MenuDTO.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/MenuDTO.java @@ -5,13 +5,14 @@ import org.lamisplus.modules.base.domain.entities.Menu; import javax.validation.constraints.NotBlank; +import java.io.Serializable; import java.util.HashSet; import java.util.Set; import java.util.TreeSet; @Data @Slf4j -public final class MenuDTO { +public final class MenuDTO implements Serializable { private Long id; diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ModuleReleaseDto.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ModuleReleaseDto.java index 978258a8..ffdd5239 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ModuleReleaseDto.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/ModuleReleaseDto.java @@ -4,11 +4,12 @@ import lombok.Data; import org.lamisplus.modules.base.domain.entities.ModuleRelease; +import java.io.Serializable; import java.time.LocalDate; @Data @Builder -public class ModuleReleaseDto { +public class ModuleReleaseDto implements Serializable { private Long id; private String name; diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/OrganisationUnitIdentifierDto.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/OrganisationUnitIdentifierDto.java new file mode 100644 index 00000000..a7da53b7 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/OrganisationUnitIdentifierDto.java @@ -0,0 +1,12 @@ +package org.lamisplus.modules.base.domain.dto; + +import lombok.Data; + +@Data +public class OrganisationUnitIdentifierDto { + private Long id; + private Long organisationUnitId; + private String code; + private String name; + private String display; +} \ No newline at end of file diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/RoleDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/RoleDTO.java index 742b1043..ea889975 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/RoleDTO.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/RoleDTO.java @@ -3,6 +3,7 @@ import lombok.Getter; import lombok.RequiredArgsConstructor; import lombok.Setter; +import lombok.ToString; import org.lamisplus.modules.base.domain.entities.Menu; import org.lamisplus.modules.base.domain.entities.Permission; @@ -12,11 +13,13 @@ @Getter @Setter @RequiredArgsConstructor +@ToString public class RoleDTO { private Long id; @NotBlank(message = "name is mandatory") private String name; private String code; private List permissions; + private String excludeRoles; private List menus; } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/SeriesDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/SeriesDTO.java new file mode 100644 index 00000000..6f3dce2d --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/SeriesDTO.java @@ -0,0 +1,14 @@ +package org.lamisplus.modules.base.domain.dto; + +import lombok.*; + +@Getter +@Setter +@AllArgsConstructor +@NoArgsConstructor +@Builder +public class SeriesDTO { + private String name; + private Object data; + +} \ No newline at end of file diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/TimeSeriesResult.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/TimeSeriesResult.java new file mode 100644 index 00000000..2dd83842 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/TimeSeriesResult.java @@ -0,0 +1,18 @@ +package org.lamisplus.modules.base.domain.dto; + + +import lombok.AllArgsConstructor; +import lombok.Getter; +import lombok.NoArgsConstructor; +import lombok.Setter; + +import java.util.List; + +@Getter +@Setter +@AllArgsConstructor +@NoArgsConstructor +public class TimeSeriesResult { + private List seriesList; + private List categories; +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/UserDTO.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/UserDTO.java index ed72fed9..ca7cb76a 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/UserDTO.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/dto/UserDTO.java @@ -8,6 +8,7 @@ import org.lamisplus.modules.base.domain.entities.*; import javax.validation.constraints.NotBlank; +import java.io.Serializable; import java.util.HashSet; import java.util.List; import java.util.Set; @@ -16,13 +17,14 @@ @Getter @Setter @NoArgsConstructor -public class UserDTO { +public class UserDTO implements Serializable { private Long id; @NotBlank(message = "userName is mandatory") private String userName; private Set roles; + private Set roleIds = new HashSet<>(); private Set permissions; @@ -49,7 +51,7 @@ public class UserDTO { private Long ipCode; @ToString.Exclude - private List applicationUserOrganisationUnits = new ArrayDeque<>(); + private transient List applicationUserOrganisationUnits = new ArrayDeque<>(); private Set facilityIds = new HashSet<>(); @@ -64,6 +66,7 @@ public UserDTO(User user) { this.roles = user.getRole().stream().map(Role::getName).collect(Collectors.toSet()); permissions = new HashSet<>(); user.getRole().forEach(roles1 ->{ + this.roleIds.add(roles1.getId()); permissions.addAll(roles1.getPermission().stream().filter(p -> p.getArchived() == 0) .map(Permission::getName).collect(Collectors.toSet())); }); diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Authority.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Authority.java index e349f94e..0d643916 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Authority.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Authority.java @@ -14,7 +14,7 @@ @Entity @Table(name = "base_authority") -@Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE) +//@Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE) @Data public final class Authority implements Serializable, Persistable { diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Chart.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Chart.java new file mode 100644 index 00000000..16859d71 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Chart.java @@ -0,0 +1,115 @@ +package org.lamisplus.modules.base.domain.entities; + +import lombok.AllArgsConstructor; +import lombok.Builder; +import lombok.Data; +import lombok.EqualsAndHashCode; +import lombok.NoArgsConstructor; +import org.lamisplus.modules.base.domain.dto.ChartDTO; + +import javax.persistence.Column; +import javax.persistence.Entity; +import javax.persistence.Id; +import javax.persistence.PrePersist; +import javax.persistence.Table; +import java.time.LocalDateTime; +import java.util.UUID; + +@Entity +@Data +@EqualsAndHashCode +@NoArgsConstructor +@AllArgsConstructor +@Builder +@Table(name = "chart", schema = "public") +public class Chart { + + @Column(name = "id", unique = true) + private UUID id; + + @Id + @Column(name = "indicator_name", nullable = false) + private String indicatorName; + + @Column(name = "description", nullable = false) + private String description; + + @Column(name = "display_name", nullable = false) + private String displayName; + + @Column(name = "location", nullable = false) + private String location; + + @Column(name = "type", nullable = false) + private String type; + + @Column(name = "icon", nullable = false) + private String icon; + + @Column(name = "query", nullable = false, length = 5000) + private String query; + + @Column(name = "module", nullable = false) + private String module; + + @Column(name = "created_date") + private LocalDateTime createdDate; + + @Column(name = "created_by") + private String createdBy; + + @Column(name = "last_modified_date") + private LocalDateTime lastModifiedDate; + + @Column(name = "last_modified_by") + private String lastModifiedBy; + + @Column(name = "archived") + private Integer archived; + + @Column(name = "position") + private Integer position; + + //added fields + + @Column(name = "x_axis_field") + private String xAxisField; + + @Column(name = "y_axis_field") + private String yAxisField; + + @Column(name = "series_name_field") + private String seriesNameField; + + @PrePersist + void setIdIfNull(){ + if (this.id == null){ + this.id = UUID.randomUUID(); + } + } + + + public static Chart fromDto(ChartDTO chartDTO){ + return Chart.builder() + .id(chartDTO.getId()) + .indicatorName(chartDTO.getIndicatorName()) + .displayName(chartDTO.getDisplayName()) + .module(chartDTO.getModule()) + .description(chartDTO.getDescription()) + .location(chartDTO.getLocation()) + .type(chartDTO.getType()) + .icon(chartDTO.getIcon()) + .query(chartDTO.getQuery()) + .module(chartDTO.getModule()) + .createdDate(chartDTO.getCreatedDate()) + .createdBy(chartDTO.getCreatedBy()) + .lastModifiedDate(chartDTO.getLastModifiedDate()) + .lastModifiedBy(chartDTO.getLastModifiedBy()) + .archived(chartDTO.getArchived()) + .position(chartDTO.getPosition()) + .xAxisField(chartDTO.getXAxisField()) + .yAxisField(chartDTO.getYAxisField()) + .seriesNameField(chartDTO.getSeriesNameField()) + .build(); + } +} \ No newline at end of file diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Module.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Module.java index 48fd3e3a..c8c926d2 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Module.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Module.java @@ -93,7 +93,7 @@ public enum Type {ERROR, SUCCESS, WARNING} @Transient private String message; - @OneToMany(mappedBy = "module", cascade = {CascadeType.ALL}) + @OneToMany(mappedBy = "module", cascade = {CascadeType.MERGE}) private Set Permissions = new HashSet<>(); private String gitHubLink; diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Role.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Role.java index 7cfefb9d..4dee4d6d 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Role.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/Role.java @@ -47,6 +47,11 @@ public class Role extends Audit { @ManyToMany(cascade = CascadeType.PERSIST) private Set permission; + @Getter + @Setter + @Column(name = "exclude_roles") + private String excludeRoles; + @Getter @Setter @ManyToMany(cascade = CascadeType.PERSIST) @@ -80,6 +85,7 @@ public String toString() { ", name='" + name + '\'' + ", dateModified='" + dateModified + '\'' + ", permissions=" + permission + + ", excludeRoles=" + excludeRoles + '}'; } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/User.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/User.java index df32b79a..ecfa3383 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/User.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/entities/User.java @@ -7,6 +7,7 @@ import org.lamisplus.modules.base.security.SecurityUtils; import javax.persistence.*; +import java.io.Serializable; import java.sql.Date; import java.time.LocalDateTime; import java.util.List; @@ -18,7 +19,7 @@ @RequiredArgsConstructor @Table(name = "base_application_user") @org.hibernate.annotations.Cache(usage = CacheConcurrencyStrategy.NONSTRICT_READ_WRITE) -public class User { +public class User implements Serializable { @Id @Column(name = "id", updatable = false) @GeneratedValue(strategy = GenerationType.IDENTITY) diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/mapper/OrganisationUnitIdentifierMapper.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/mapper/OrganisationUnitIdentifierMapper.java new file mode 100644 index 00000000..0bfd8e66 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/mapper/OrganisationUnitIdentifierMapper.java @@ -0,0 +1,21 @@ +package org.lamisplus.modules.base.domain.mapper; + +import org.lamisplus.modules.base.domain.dto.OrganisationUnitIdentifierDto; +import org.lamisplus.modules.base.domain.entities.OrganisationUnitIdentifier; +import org.springframework.stereotype.Service; + +@Service +public class OrganisationUnitIdentifierMapper { + + public OrganisationUnitIdentifierDto identifierToDto(OrganisationUnitIdentifier identifier) { + + OrganisationUnitIdentifierDto dto = new OrganisationUnitIdentifierDto(); + dto.setCode(identifier.getCode()); + dto.setId(identifier.getId()); + dto.setName(identifier.getName()); + dto.setOrganisationUnitId(dto.getOrganisationUnitId()); + dto.setDisplay(identifier.getName() + " (" + identifier.getCode() + ")"); + return dto; + } + +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ApplicationCodesetRepository.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ApplicationCodesetRepository.java index 7ab8ca59..37a6d451 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ApplicationCodesetRepository.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ApplicationCodesetRepository.java @@ -52,4 +52,9 @@ public interface ApplicationCodesetRepository extends JpaRepository findByCodesetGroup(String codesetGroup); + } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ChartRepository.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ChartRepository.java new file mode 100644 index 00000000..cd970230 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ChartRepository.java @@ -0,0 +1,43 @@ +package org.lamisplus.modules.base.domain.repositories; + +import org.lamisplus.modules.base.domain.dto.ChartDTO; +import org.lamisplus.modules.base.domain.entities.Chart; +import org.springframework.data.jpa.repository.JpaRepository; +import org.springframework.data.jpa.repository.Query; +import org.springframework.data.repository.query.Param; +import org.springframework.stereotype.Repository; + +import java.util.List; +import java.util.Optional; +import java.util.Set; + +@Repository +public interface ChartRepository extends JpaRepository { + + @Query("SELECT c.indicatorName, c.type FROM Chart c WHERE c.location = :location") + List findIndicatorNameAndTypeByLocation(@Param("location") String location); + + // Alternative native query approach + @Query(value = "SELECT indicator_name, type, table_name, description, display_name, icon, position FROM chart WHERE location = :location", nativeQuery = true) + List findIndicatorNameAndTypeByLocationNative(@Param("location") String location); + + @Query(value = "SELECT EXISTS (SELECT 1 FROM pg_tables WHERE schemaname = 'public' AND tablename = ?1)", nativeQuery = true) + boolean tableExists(String tableName); + + @Query(value = "SELECT * FROM chart WHERE indicator_name = ?1 LIMIT 1", nativeQuery = true) + Optional findOneByIndicatorName(String indicatorName); + + void deleteByIndicatorName(String indicatorName); + + @Query(value = "SELECT * FROM chart WHERE location = ?1 ", nativeQuery = true) + Set getAllChartsByLocation(String location); + + @Query(value = "SELECT * FROM chart WHERE location = ?1 AND module in (SELECT m.name FROM base_module m WHERE m.active = true) AND archived = 0", nativeQuery = true) + Set getAllActiveChartsByLocation(String location); + + @Query(value = "SELECT query FROM chart WHERE indicator_name = ?1 ", nativeQuery = true) + String getChartQuery(String indicatorName); + + @Query(value = "SELECT * FROM chart WHERE indicator_name=?1 ", nativeQuery = true) + Optional findByIndicatorName(String indicatorName); +} diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ModuleRepository.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ModuleRepository.java index c0c138e4..43b2f7dd 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ModuleRepository.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/ModuleRepository.java @@ -14,19 +14,11 @@ public interface ModuleRepository extends JpaRepository { Optional findByName(String name); - /*List findByProcessConfigIsTrue(); + @Query("SELECT m.name FROM Module m") + List findAllModuleNames(); - List findByUninstallIsTrue(); - - List findByActiveIsTrue();*/ - - //List findByActiveIsTrueAndStartedIsTrue(); - - //List findAllByStatusNot(int status); - - //Optional findByIdAndStatus(String id, int status); - - //List findAllByModuleType(int moduleType); + @Query("SELECT m.name FROM Module m WHERE m.active = true") + List findActiveModuleNames(); List findByActiveIsTrueOrderByPriority(); diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/OrganisationUnitIdentifierRepository.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/OrganisationUnitIdentifierRepository.java index de8fada7..b305318c 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/OrganisationUnitIdentifierRepository.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/OrganisationUnitIdentifierRepository.java @@ -1,6 +1,8 @@ package org.lamisplus.modules.base.domain.repositories; import org.lamisplus.modules.base.domain.entities.OrganisationUnitIdentifier; +import org.springframework.data.domain.Page; +import org.springframework.data.domain.Pageable; import org.springframework.data.jpa.repository.JpaRepository; import org.springframework.data.jpa.repository.Query; import org.springframework.data.repository.query.Param; @@ -16,4 +18,10 @@ Optional findByOrganisationUnitIdAndIsDatimId( @Param("organisationUnitId") Long organisationUnitId, @Param("name") String name); + + @Query(value = "SELECT boui.code, bou.name, boui.id, boui.organisation_unit_id FROM base_organisation_unit_identifier boui " + + "JOIN base_organisation_unit bou ON bou.id = boui.organisation_unit_id " + + "WHERE boui.code ILIKE :search OR bou.name ILIKE :search ", nativeQuery = true) + Page searchOrganisationUnitsPage(String search, Pageable pageable); + } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/PermissionRepository.java b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/PermissionRepository.java index d48100f5..7a6088d2 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/PermissionRepository.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/domain/repositories/PermissionRepository.java @@ -18,4 +18,6 @@ public interface PermissionRepository extends JpaRepository { List findAllByArchived(int archived); Optional findByDescriptionAndArchived(String description, int archived); + + Optional findByName(String description); } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/installers/SchemaInstaller.java b/base-module/src/main/java/org/lamisplus/modules/base/installers/SchemaInstaller.java index d8bf9cab..29f61075 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/installers/SchemaInstaller.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/installers/SchemaInstaller.java @@ -7,7 +7,7 @@ @Order(1) @Installer(name = "schema-installer", description = "Installs the required database tables", - version = 1) + version = 2) public class SchemaInstaller extends AcrossLiquibaseInstaller { public SchemaInstaller() { super("classpath:installers/base/schema/schema.xml"); diff --git a/base-module/src/main/java/org/lamisplus/modules/base/installers/Updates.java b/base-module/src/main/java/org/lamisplus/modules/base/installers/Updates.java index 77a811b6..32fdfd7a 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/installers/Updates.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/installers/Updates.java @@ -6,7 +6,7 @@ @Order(3) @Installer(name = "core-schema-updates", description = "Updates the required database tables data", - version = 34) + version = 50) public class Updates extends AcrossLiquibaseInstaller { public Updates() { super("classpath:installers/base/schema/updates.xml"); diff --git a/base-module/src/main/java/org/lamisplus/modules/base/module/ModuleResponse.java b/base-module/src/main/java/org/lamisplus/modules/base/module/ModuleResponse.java index 58aef571..9e34bb58 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/module/ModuleResponse.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/module/ModuleResponse.java @@ -3,8 +3,10 @@ import lombok.Data; import org.lamisplus.modules.base.domain.entities.Module; +import java.io.Serializable; + @Data -public class ModuleResponse { +public class ModuleResponse implements Serializable { public enum Type {ERROR, SUCCESS} private Type type; diff --git a/base-module/src/main/java/org/lamisplus/modules/base/module/ModuleService.java b/base-module/src/main/java/org/lamisplus/modules/base/module/ModuleService.java index c43ddbfe..7d8f9c6a 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/module/ModuleService.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/module/ModuleService.java @@ -11,13 +11,12 @@ import org.apache.commons.lang3.time.DateUtils; import org.lamisplus.modules.base.controller.apierror.EntityNotFoundException; import org.lamisplus.modules.base.domain.entities.*; -import org.lamisplus.modules.base.domain.entities.Module.Type; import org.lamisplus.modules.base.domain.repositories.MenuRepository; import org.lamisplus.modules.base.domain.repositories.ModuleArtifactRepository; import org.lamisplus.modules.base.domain.repositories.ModuleDependencyRepository; import org.lamisplus.modules.base.domain.repositories.ModuleRepository; +import org.lamisplus.modules.base.domain.repositories.PermissionRepository; import org.lamisplus.modules.base.util.UnsatisfiedDependencyException; -import org.lamisplus.modules.base.yml.ConfigSchemaValidator; import org.lamisplus.modules.base.yml.ModuleConfig; import org.springframework.stereotype.Service; import org.springframework.transaction.annotation.Transactional; @@ -45,6 +44,7 @@ public class ModuleService { private final ModuleManager moduleManager; private final ModuleRepository moduleRepository; + private final PermissionRepository permissionRepository; private final MenuRepository menuRepository; private final ModuleArtifactRepository moduleArtifactRepository; private final ModuleDependencyRepository moduleDependencyRepository; @@ -223,10 +223,49 @@ public Module uploadModuleData(MultipartFile file) { module.setUmdLocation(config.getUmdLocation()); module.setBasePackage(config.getBasePackage()); if(config.getGitHubLink() != null) module.setGitHubLink(config.getGitHubLink()); - module.setPermissions(config.getPermissions() - .stream() - .map(permission -> {permission.setModuleName(config.getName()); return permission;}) - .collect(Collectors.toSet())); + + List permsToPersist = config.getPermissions().stream() + .map(permission -> { + + Permission foundPerm = permissionRepository.findByName(permission.getName()) + .orElse(null); + if (foundPerm != null) { + return foundPerm; + } else { + foundPerm = permission; + foundPerm.setId(null); + foundPerm.setModuleName(null); + return foundPerm; + } + }).collect(Collectors.toList()); + + Set permissions = permissionRepository.saveAll(permsToPersist).stream().map(perm -> { + perm.setModuleName(config.getName()); + return perm; + }).collect(Collectors.toSet()); + + module.setPermissions(permissions); + +// module.setPermissions(config.getPermissions() +// .stream() +// .map(permission -> { +// // find the perm, if found, update it, if not found create it +// +// Permission foundPerm = permissionRepository.findByName(permission.getName()) +// .orElse(null); +// if (foundPerm != null) { +// foundPerm.setModuleName(config.getName()); +// LOG.info("Perm found: {}", foundPerm.toString()); +// return foundPerm; +// } else { +// foundPerm = permission; +// foundPerm.setModuleName(config.getName()); +// LOG.info("Perm not found: {}", foundPerm.toString()); +// return foundPerm; +// } +//// permission.setModuleName(config.getName()); return permission; +// }) +// .collect(Collectors.toSet())); module.setPriority(config.getPriority()); if(!config.getDependencies().isEmpty()){ config.getDependencies().forEach((k, v)->{ @@ -362,4 +401,20 @@ public boolean exist(String moduleName){ moduleName = "%"+moduleName+"%"; return moduleRepository.findLikeByMenu(moduleName).isPresent(); } + + /** + * Get all module names + * @return List of module names + */ + public List getAllModuleNames() { + return moduleRepository.findAllModuleNames(); + } + + /** + * Get only active module names + * @return List of active module names + */ + public List getActiveModuleNames() { + return moduleRepository.findActiveModuleNames(); + } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/security/TokenProvider.java b/base-module/src/main/java/org/lamisplus/modules/base/security/TokenProvider.java index 4d181601..d38eea47 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/security/TokenProvider.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/security/TokenProvider.java @@ -31,6 +31,7 @@ public class TokenProvider { private final Logger log = LoggerFactory.getLogger(TokenProvider.class); private static final String AUTHORITIES_KEY = "auth"; + private static final String USER = "user"; @Autowired private RoleRepository roleRepository; @@ -110,13 +111,15 @@ private String getPermissionsFromClaims(Claims claims){ String permits=""; //Get all user permissions for (Role role : roles) { - if(!StringUtils.isEmpty(permits)) { + if(!StringUtils.isEmpty(permits) && !role.getPermission().isEmpty()) { permits = permits +","; } - permits = permits + role.getPermission().stream().map(Permission::getName).collect(Collectors.joining(",")); + if (!role.getPermission().isEmpty()){ + permits = permits + role.getPermission().stream().map(Permission::getName).collect(Collectors.joining(",")); + } } //check if no permission then it must be an ordinary user so assign the role as user authority - if(StringUtils.isEmpty(permits))permits = claims.get(AUTHORITIES_KEY).toString(); + if(StringUtils.isEmpty(permits))permits = USER; return permits; } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/service/ApplicationCodesetService.java b/base-module/src/main/java/org/lamisplus/modules/base/service/ApplicationCodesetService.java index 52d3bdb4..ecac59e3 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/service/ApplicationCodesetService.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/service/ApplicationCodesetService.java @@ -14,11 +14,14 @@ import org.lamisplus.modules.base.controller.apierror.EntityNotFoundException; import org.lamisplus.modules.base.controller.apierror.RecordExistException; import org.lamisplus.modules.base.domain.dto.ApplicationCodesetDTO; +import org.lamisplus.modules.base.domain.dto.CodeSetDTO; import org.lamisplus.modules.base.domain.entities.ApplicationCodeSet; import org.lamisplus.modules.base.domain.repositories.ApplicationCodesetRepository; +import org.springframework.cache.annotation.Cacheable; import org.springframework.stereotype.Service; import org.springframework.transaction.annotation.Transactional; import org.springframework.web.multipart.MultipartFile; +import scala.collection.IndexedSeqView; import java.io.BufferedReader; import java.io.IOException; @@ -33,6 +36,9 @@ import java.util.function.Predicate; import java.util.stream.Collectors; +import static liquibase.pro.packaged.kt.e; +import static liquibase.pro.packaged.kt.g; + @Service @Transactional @Slf4j @@ -332,6 +338,25 @@ public List saveCodesets(List code .collect(Collectors.toList()); } + //@Cacheable(value = "codeSets", key = "#group") + public List getCodeSetByGroup(String group) { + List entities = applicationCodesetRepository.findByCodesetGroup(group) + .stream() + .filter(distinctByKey(ApplicationCodeSet::getDisplay)) + .collect(Collectors.toList()); + List result = new ArrayList<>(); + for(ApplicationCodeSet e : entities) { + result.add(new CodeSetDTO(e.getId(), e.getCode(), e.getDisplay())); + } + return result; + } + public Map> getMultipleCodeSets(List groups) { + Map> result = new HashMap<>(); + for(String group : groups) { + result.put(group, getCodeSetByGroup(group)); + } + return result; + } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/service/ChartService.java b/base-module/src/main/java/org/lamisplus/modules/base/service/ChartService.java new file mode 100644 index 00000000..e2f61d28 --- /dev/null +++ b/base-module/src/main/java/org/lamisplus/modules/base/service/ChartService.java @@ -0,0 +1,743 @@ +package org.lamisplus.modules.base.service; + +import com.fasterxml.jackson.core.JsonParseException; +import com.fasterxml.jackson.databind.JsonMappingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import lombok.RequiredArgsConstructor; +import lombok.extern.slf4j.Slf4j; +import org.lamisplus.modules.base.domain.dto.*; +import org.lamisplus.modules.base.domain.entities.Chart; +import org.lamisplus.modules.base.domain.entities.User; +import org.lamisplus.modules.base.domain.repositories.ChartRepository; +import org.lamisplus.modules.base.module.ModuleService; +import org.springframework.stereotype.Service; +import org.springframework.transaction.annotation.Transactional; + +import javax.sql.DataSource; +import java.io.IOException; +import java.io.OutputStream; +import java.io.OutputStreamWriter; +import java.nio.charset.StandardCharsets; +import java.sql.Connection; +import java.sql.ResultSet; +import java.sql.ResultSetMetaData; +import java.sql.SQLException; +import java.sql.Statement; +import java.sql.Types; +import java.util.*; +import java.util.stream.Collectors; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.web.multipart.MultipartFile; + +import static org.reflections.Reflections.log; + +@Slf4j +@Service +@Transactional +@RequiredArgsConstructor +public class ChartService { + private final ChartRepository chartRepository; + private final ModuleService moduleService; + private final DataSource dataSource; + private final UserService userService; + private final ObjectMapper objectMapper; + + + /** + * Get indicator names and types by location + * @param location the location to filter by + * @return list of ChartDTO containing indicator name and type + */ + //@Cacheable("core") + public List getIndicatorNameAndTypeByLocation(String location) { +// return chartRepository.getAllChartsByLocation(location) + return chartRepository.getAllActiveChartsByLocation(location) + .stream().map(ChartDTO::fromEntitySafe) + .collect(Collectors.toList()); + } + + /** + * Alternative method using native query + * @param location the location to filter by + * @return list of ChartDTO containing indicator name and type + */ + public List getIndicatorNameAndTypeByLocationNative(String location) { + List results = chartRepository.findIndicatorNameAndTypeByLocationNative(location); + return results.stream() + .map(result -> ChartDTO.builder() + .indicatorName((String) result[0]) + .type((String) result[1]) +// .tableName((String) result[3]) + .description((String) result[4]) + .displayName((String) result[5]) + .icon((String) result[3]) + .position((Integer) result[7]) + .build()) + .collect(Collectors.toList()); + } + + /** + * Get all charts + * @return list of all Chart entities + */ + public List getAllCharts() { + return chartRepository.findAll(); + } + + /** + * Get all charts + * @return list of all Charts as DTOs + */ + public List getAllChartsAsList() { + return chartRepository.findAll().stream().map(ChartDTO::fromEntitySafe).collect(Collectors.toList()); + } + + /** + * Get chart by indicator name + * @param indicatorName the indicator name (primary key) + * @return Chart entity or null if not found + */ + public Chart getChartByIndicatorName(String indicatorName) { + return chartRepository.findById(indicatorName).orElse(null); + } + + /** + * Save or update a chart + * @param chart the chart to save + * @return saved Chart entity + */ + public Chart saveChart(Chart chart) { + return chartRepository.save(chart); + } + + /** + * Update chart by indicator name + * @param indicatorName the indicator name (primary key) + */ + public ChartDTO updateChart(String indicatorName, ChartRequestDto chartRequestDto) { + Chart foundChart = chartRepository.findOneByIndicatorName(indicatorName) + .orElseThrow(() -> new IllegalArgumentException("No chart found for indicator name provided")); + + foundChart.setLocation(chartRequestDto.getLocation()); + foundChart.setPosition(chartRequestDto.getPosition()); + foundChart.setType(chartRequestDto.getType()); + foundChart.setModule(chartRequestDto.getModule()); + foundChart.setIcon(chartRequestDto.getIcon()); + foundChart.setDescription(chartRequestDto.getDescription()); + foundChart.setDisplayName(chartRequestDto.getDisplayName()); + foundChart.setPosition(chartRequestDto.getPosition()); + + return ChartDTO.fromEntity(chartRepository.save(foundChart)); + } + + /** + * Delete chart by indicator name + * @param indicatorName the indicator name (primary key) + */ + public void deleteChart(String indicatorName) { + chartRepository.deleteByIndicatorName(indicatorName); + } + + /** + * Get get all charts + * @param tableName the table name + * @param location the of the chart + */ + private Set getAllChart(String tableName, String location) { + if (!tableExists(tableName)){ + return new HashSet<>(); + } + + String query = String.format("SELECT indicator_name, type, description, display_name, icon, position" + + " FROM %s WHERE location='%s' AND archived = 0 ", tableName, location); + Set chartDTOS = new HashSet<>(); + Connection conn = null; + try { + conn = dataSource.getConnection(); + Statement stmt = conn.createStatement(java.sql.ResultSet.TYPE_FORWARD_ONLY, + java.sql.ResultSet.CONCUR_READ_ONLY); + ResultSet resultSet = stmt.executeQuery(query); + while (resultSet.next()) { + ChartDTO chartDTO = ChartDTO.builder() + .indicatorName(resultSet.getString(1)) + .type(resultSet.getString(2)) +// .tableName(tableName) + .description(resultSet.getString(3)) + .displayName(resultSet.getString(4)) + .icon(resultSet.getString(5)) + .position(resultSet.getInt(6)) + .build(); + chartDTOS.add(chartDTO); + } + } catch (SQLException e) { + logSQLExceptions("SQL Exception while getting chartDTOS result set {}", e); + } finally { + if (conn != null) { + try { + conn.close(); + } catch (SQLException e) { + logSQLExceptions("Exception while closing chartDTOS {}", e); + } + } + } + return chartDTOS; + } + + private boolean tableExists(String tableName) { + boolean tableExists = chartRepository.tableExists(tableName); + return tableExists; + } + + /** + * Get chart Value For Dashboard display + * @param indicatorName the name of the table + * @param facilityId the id of the facility + * @return list of ChartDTO containing indicator name and type + */ + // @Cacheable("core") +// public ChartValueDTO getChartValueForDashboard(String tableName, String indicatorName, Long facilityId) { + public ChartValueDTO getChartValueForDashboard(String indicatorName, Long facilityId) { +// return getChartValue(indicatorName, getChartQuery(tableName, indicatorName).getQuery(), facilityId); + return getChartValue(indicatorName, facilityId); + } + + /** + * Get charts values + * @param tableName the table name + * @param indicatorName the indicatorName of the chart + */ + private ChartQueryDTO getChartQuery(String tableName, String indicatorName) { + String query = String.format("SELECT query FROM %s " + + "WHERE indicator_name='%s' AND archived=0 LIMIT 1", tableName, indicatorName); + ChartQueryDTO chartQueryDTO = new ChartQueryDTO(); + Connection conn = null; + try { + conn = dataSource.getConnection(); + Statement stmt = conn.createStatement(java.sql.ResultSet.TYPE_FORWARD_ONLY, + java.sql.ResultSet.CONCUR_READ_ONLY); + ResultSet resultSet = stmt.executeQuery(query); + if (resultSet.next()) { + chartQueryDTO = ChartQueryDTO.builder() + .indicatorName(indicatorName) + .query(resultSet.getString(1)) + .build(); + return chartQueryDTO; + } + } catch (SQLException e) { + logSQLExceptions("SQL Exception while getting chartQueryDTOS result set {}", e); + } finally { + if (conn != null) { + try { + conn.close(); + } catch (SQLException e) { + logSQLExceptions("SQL Exception while closing chartQueryDTOS connection {}", e); + } + } + } + return chartQueryDTO; + } + + /** + * Get charts value by indicatorName and query + * @param facilityId the facility ID + */ + private ChartValueDTO getChartValue(String indicatorName, Long facilityId) { + Chart chart = chartRepository.findByIndicatorName(indicatorName).orElse(null); + if (chart == null) { + throw new IllegalArgumentException("Chart not found: " + indicatorName); + } + + String processedQuery = chart.getQuery().replace("?facilityId", facilityId.toString()); +// query = query.replace("?facilityId", facilityId.toString()); + ChartValueDTO chartValueDTO = new ChartValueDTO<>(); + Connection conn = null; + try { + conn = dataSource.getConnection(); + Statement stmt = conn.createStatement(java.sql.ResultSet.TYPE_FORWARD_ONLY, + java.sql.ResultSet.CONCUR_READ_ONLY); + ResultSet resultSet = stmt.executeQuery(processedQuery); + + + chartValueDTO = processResultSet(resultSet, chart); + + return chartValueDTO; + } catch (SQLException e) { + logSQLExceptions("SQL Exception while getting chartValueDTOS result set {}", e); + + } finally { + if (conn != null) { + try { + conn.close(); + } catch (SQLException e) { + logSQLExceptions("Exception while closing chartValueDTOS {}", e); + } + } + } + return chartValueDTO; + } + + @Transactional + public List importChartData(MultipartFile file) throws IOException { + LOG.info("Importing chart datafrom file."); + List listOfCodesets = new ArrayList<>(); + + try { + listOfCodesets = Arrays.asList(objectMapper.readValue( + file.getInputStream(), ChartDTO[].class)); + } catch (JsonMappingException | JsonParseException e) { + throw new RuntimeException("An error occurred while processing file.", e); + } + return listOfCodesets; + } + + @Transactional + public List saveCharts(List chartDtos) { + List chartsToBeSaved = new ArrayList<>(); + + for (ChartDTO dto : chartDtos) { + // This checks if the code with the same code exists + Optional existing = chartRepository.findOneByIndicatorName(dto.getIndicatorName()); + + if (existing.isPresent()) { + // Update existing chart + Chart existingChart = existing.get(); +// existingChart.setId(dto.getId()); + createChartFromDtoAndAddToList(chartsToBeSaved, dto, existingChart); + } else { + // add new chart when is not existing + Chart newChart = new Chart(); + createChartFromDtoAndAddToList(chartsToBeSaved, dto, newChart); + } + } + + List savedCharts = + chartRepository.saveAll(chartsToBeSaved); + // Transform the saved entities back to DTOs and return the list + return savedCharts.stream() + .map(ChartDTO::fromEntity) + .collect(Collectors.toList()); + } + + public void getChartsFile(OutputStream outputStream) { + LOG.info("Exporting charts file."); + + List charts = + chartRepository.findAll(); + List dtos = charts.stream() + .map(ChartDTO::fromEntity) + .collect(Collectors.toList()); + try (OutputStreamWriter writer = new OutputStreamWriter(outputStream, StandardCharsets.UTF_8)) { + objectMapper.enable(SerializationFeature.INDENT_OUTPUT); + objectMapper.writeValue(writer, dtos); + outputStream.close(); + } catch (Exception e) { + LOG.error("Error occurred while writing file: {}", e.getMessage()); + } + } + + private void createChartFromDtoAndAddToList(List chartsToBeSaved, ChartDTO dto, Chart newChart) { + newChart.setIndicatorName(dto.getIndicatorName()); + newChart.setDescription(dto.getDescription()); + newChart.setDisplayName(dto.getDisplayName()); + newChart.setModule(dto.getModule()); + newChart.setLocation(dto.getLocation()); + newChart.setType(dto.getType()); + newChart.setIcon(dto.getIcon()); + newChart.setQuery(dto.getQuery()); + newChart.setCreatedDate(dto.getCreatedDate()); + newChart.setCreatedBy(dto.getCreatedBy()); + newChart.setLastModifiedDate(dto.getLastModifiedDate()); + newChart.setLastModifiedBy(dto.getLastModifiedBy()); + newChart.setArchived(dto.getArchived()); + newChart.setPosition(dto.getPosition()); + chartsToBeSaved.add(newChart); + } + + /** + * Logging SQL Exceptions + * @param message - the error message + * @param sqlException - the sql exception + */ + private void logSQLExceptions(String message, SQLException sqlException){ + LOG.info(message, sqlException.getMessage()); + } + + /** + * get facility id of current login user, to be used for the cron job + * @return Long - the facility id + */ + public Long getFacilityId(){ + return userService.getCurrentLoggedInUser().map(User::getCurrentOrganisationUnitId).orElse(null); + } + + + + + + + + + /** + * Get chart data for visualization + * @param indicatorName the indicator name + * @param facilityId the facility ID for filtering + * @return ChartDataDTO formatted for Highcharts + */ + public ChartValueDTO getChartData(String indicatorName, Long facilityId) { + + Chart chart = chartRepository.findByIndicatorName(indicatorName).orElse(null); + if (chart == null) { + throw new IllegalArgumentException("Chart not found: " + indicatorName); + } + + String processedQuery = chart.getQuery().replace("?facilityId", facilityId.toString()); + + try (Connection conn = dataSource.getConnection(); + Statement stmt = conn.createStatement(); + ResultSet resultSet = stmt.executeQuery(processedQuery)) { + + // build chart config + ChartValueDTO chartConfig = processResultSet(resultSet, chart); + + // wrap in ChartValueDTO + return ChartValueDTO.builder() + .indicatorName(chart.getIndicatorName()) + .value(chartConfig) + .build(); + + } catch (SQLException e) { + log.error("SQL Exception while executing query for chart: {}", indicatorName, e); + throw new RuntimeException("Failed to execute chart query", e); + } + } + + + + private ChartValueDTO processResultSet(ResultSet resultSet, Chart chart) throws SQLException { + String chartType = chart.getType().toLowerCase(); + List seriesList = new ArrayList<>(); + List categories = new ArrayList<>(); + Object xAxis = null; + Object yAxis = null; + Map yAxisTitleMap = new HashMap<>(); + Map yAxisMap = new HashMap<>(); + Map xAxisMap = new HashMap<>(); + Map chartMap = new HashMap<>(); + Map titleMap = new HashMap<>(); + + ChartConfigDTO chartConfigDTO; + + switch (chartType) { + case "pie": + seriesList.add(processPieData(resultSet, chart)); + titleMap.put("text", chart.getDisplayName()); + chartConfigDTO = ChartConfigDTO.builder() + .chart(chartMap) + .title(titleMap) + .series(seriesList) + .build(); + chartMap.put("type", chartType); + + return ChartValueDTO.builder() + .value(chartConfigDTO) + .indicatorName(chart.getIndicatorName()) + .build(); + case "column": + case "bar": + CategoricalDataResult barResult = processBarColumnData(resultSet, chart); + seriesList.add(barResult.getSeries()); + categories = barResult.getCategories(); + + xAxisMap.put("categories", categories); + xAxis = xAxisMap; + + yAxisTitleMap.put("text", getYAxisTitle(chart)); + + yAxisMap.put("title", yAxisTitleMap); + yAxis = yAxisMap; + + chartMap.put("type", chartType); + + titleMap.put("text", chart.getDisplayName()); + chartConfigDTO = ChartConfigDTO.builder() + .chart(chartMap) + .title(titleMap) + .xAxis(xAxisMap) + .yAxis(yAxisMap) + .series(seriesList) + .build(); + + return ChartValueDTO.builder() + .value(chartConfigDTO) + .indicatorName(chart.getIndicatorName()) + .build(); + + case "line": + TimeSeriesResult timeSeriesResult = processTimeSeriesData(resultSet, chart); + seriesList.addAll(timeSeriesResult.getSeriesList()); + categories = timeSeriesResult.getCategories(); + yAxisTitleMap.put("text", getYAxisTitle(chart)); + xAxisMap.put("categories", categories); + yAxisMap.put("title", yAxisTitleMap); + yAxis = yAxisMap; + xAxis = xAxisMap; + + chartMap.put("type", chartType); + + titleMap.put("text", chart.getDisplayName()); + chartConfigDTO = ChartConfigDTO.builder() + .chart(chartMap) + .title(titleMap) + .xAxis(xAxisMap) + .yAxis(yAxisMap) + .series(seriesList) + .build(); + + return ChartValueDTO.builder() + .value(chartConfigDTO) + .indicatorName(chart.getIndicatorName()) + .build(); + + case "card": + // Handle card type - single value display + Object value = processCardData(resultSet, chart); +// seriesList.add(cardSeries); + // chartvalueDto + return ChartValueDTO.builder() + .value(value) + .indicatorName(chart.getIndicatorName()) + .build(); +// break; + + + default: + throw new IllegalArgumentException("Unsupported chart type: " + chartType); + } + + // Build xAxis with categories for non-pie and non-card charts +// if (!chartType.equals("pie") && !chartType.equals("card") && !categories.isEmpty()) { +// Map xAxisMap = new HashMap<>(); +// xAxisMap.put("categories", categories); +// xAxis = xAxisMap; +// } +// +// +// if (!chartType.equals("pie") && !chartType.equals("card")) { +// Map yAxisTitleMap = new HashMap<>(); +// yAxisTitleMap.put("text", getYAxisTitle(chart)); +// +// Map yAxisMap = new HashMap<>(); +// yAxisMap.put("title", yAxisTitleMap); +// yAxis = yAxisMap; +// } +// +// Map chartMap = new HashMap<>(); +// if (!chartType.equals("card")) { +// chartMap.put("type", chartType); +// } else { +// +// chartMap.put("type", null); +// } +// +// // Build title map +// Map titleMap = new HashMap<>(); +// titleMap.put("text", chart.getDisplayName()); + +// ChartValueDTO chartValueDTO = new ChartValueDTO<>(); +// chartValueDTO.setIndicatorName(chart.getIndicatorName()); +// +// chartConfigDTO = ChartConfigDTO.builder() +// .chart(chartMap) +// .title(titleMap) +// .xAxis(xAxis) +// .yAxis(yAxis) +// .series(seriesList) +// .build(); +// +// return ChartValueDTO.builder() +// .value(chartConfigDTO) +// .indicatorName(chart.getIndicatorName()) +// .build(); + } + + private String getYAxisTitle(Chart chart) { + // Use yAxisField if available, otherwise provide a default + return chart.getYAxisField() != null ? chart.getYAxisField() : "Value"; + } + + + + /** + * Process data for pie charts + */ + private SeriesDTO processPieData(ResultSet resultSet, Chart chart) throws SQLException { + List data = new ArrayList<>(); + + while (resultSet.next()) { + String name = resultSet.getString(chart.getXAxisField()); + Number value = resultSet.getBigDecimal(chart.getYAxisField()); + + Map dataPoint = new HashMap<>(); + dataPoint.put("name", name); + dataPoint.put("y", value); + data.add(dataPoint); + } + + return SeriesDTO.builder() + .name(chart.getIndicatorName()) + .data(data) + .build(); + } + + /** + * Process data for bar/column charts + */ + private CategoricalDataResult processBarColumnData(ResultSet resultSet, Chart chart) throws SQLException { + List data = new ArrayList<>(); + List categories = new ArrayList<>(); + + while (resultSet.next()) { + String name = resultSet.getString(chart.getXAxisField()); + Number value = resultSet.getBigDecimal(chart.getYAxisField()); + + data.add(value); + categories.add(name); + } + + SeriesDTO series = SeriesDTO.builder() + .name(chart.getIndicatorName()) + .data(data) + .build(); + + return new CategoricalDataResult(series, categories); + } + + /** + * Process data for time series charts (line) + */ +// private TimeSeriesResult processTimeSeriesData(ResultSet resultSet, Chart chart) throws SQLException { +// Map> seriesDataMap = new HashMap<>(); +// Set categories = new LinkedHashSet<>(); +// +// while (resultSet.next()) { +// String category = resultSet.getString(chart.getXAxisField()); +// Number value = resultSet.getBigDecimal(chart.getYAxisField()); +// String seriesName = chart.getSeriesNameField() != null ? +// resultSet.getString(chart.getSeriesNameField()) : chart.getIndicatorName(); +// +// categories.add(category); +// +// if (!seriesDataMap.containsKey(seriesName)) { +// seriesDataMap.put(seriesName, new ArrayList<>()); +// } +// seriesDataMap.get(seriesName).add(value); +// } +// +// List seriesList = new ArrayList<>(); +// for (Map.Entry> entry : seriesDataMap.entrySet()) { +// seriesList.add(SeriesDTO.builder() +// .name(entry.getKey()) +// .data(entry.getValue()) +// .build()); +// } +// +// return new TimeSeriesResult(seriesList, new ArrayList<>(categories)); +// } + + private TimeSeriesResult processTimeSeriesData(ResultSet resultSet, Chart chart) throws SQLException { + List categories = new ArrayList<>(); + Map> seriesDataMap = new LinkedHashMap<>(); + + ResultSetMetaData metaData = resultSet.getMetaData(); + int columnCount = metaData.getColumnCount(); + + // X-axis column (e.g. year, date_created, processing_date, etc.) + String xAxisField = chart.getXAxisField(); + + // Detect numeric columns (exclude xAxis + non-numeric fields) + List seriesColumns = new ArrayList<>(); + for (int i = 1; i <= columnCount; i++) { + String colName = metaData.getColumnLabel(i); + int colType = metaData.getColumnType(i); + + if (!colName.equalsIgnoreCase(xAxisField) && isNumericType(colType)) { + seriesColumns.add(colName); + seriesDataMap.put(colName, new ArrayList<>()); + } + } + + while (resultSet.next()) { + String category = resultSet.getString(xAxisField); + categories.add(category); + + for (String col : seriesColumns) { + Number value = resultSet.getBigDecimal(col); + seriesDataMap.get(col).add(value != null ? value : 0); + } + } + + List seriesList = new ArrayList<>(); + for (Map.Entry> entry : seriesDataMap.entrySet()) { + seriesList.add(SeriesDTO.builder() + .name(capitalize(entry.getKey())) + .data(entry.getValue()) + .build()); + } + + return new TimeSeriesResult(seriesList, categories); + } + + private boolean isNumericType(int sqlType) { + switch (sqlType) { + case Types.INTEGER: + case Types.BIGINT: + case Types.DECIMAL: + case Types.DOUBLE: + case Types.FLOAT: + case Types.NUMERIC: + case Types.REAL: + case Types.SMALLINT: + case Types.TINYINT: + return true; + default: + return false; + } + } + + private String capitalize(String str) { + if (str == null || str.isEmpty()) return str; + return str.substring(0, 1).toUpperCase() + str.substring(1).toLowerCase(); + } + + /** + * Process data for card charts (single value display) + */ + private Object processCardData(ResultSet resultSet, Chart chart) throws SQLException { + Object value = null; + + if (resultSet.next()) { + value = resultSet.getObject(1); // Get first column + + if (value instanceof Number) { + } else if (value instanceof String) { + } else { + value = value != null ? value.toString() : "N/A"; + } + } else { + // No data found + value = 0; // or "N/A" or whatever default you prefer + } + +// return SeriesDTO.builder() +// .name(chart.getIndicatorName()) +// .data(value) +// .build(); + return value; + } + + + + + +} \ No newline at end of file diff --git a/base-module/src/main/java/org/lamisplus/modules/base/service/ModuleUpdateService.java b/base-module/src/main/java/org/lamisplus/modules/base/service/ModuleUpdateService.java index 903db5c9..9ce5644d 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/service/ModuleUpdateService.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/service/ModuleUpdateService.java @@ -7,7 +7,6 @@ import org.springframework.boot.configurationprocessor.json.JSONArray; import org.springframework.boot.configurationprocessor.json.JSONException; import org.springframework.boot.configurationprocessor.json.JSONObject; -import org.springframework.context.annotation.Bean; import org.springframework.http.*; import org.springframework.scheduling.annotation.EnableScheduling; import org.springframework.scheduling.annotation.Scheduled; @@ -29,33 +28,25 @@ public class ModuleUpdateService { private static final String BROWSER_DOWNLOAD_URL = "browser_download_url"; private static final String DOT_JAR = ".jar"; private final ModuleRepository moduleRepository; - private final InternetConnectivityService internetConnectivityService; /** * Checking for module updates */ // @Scheduled(fixedRate = 10800000) //10800000 milliseconds = 3 hours -// @Scheduled(cron = "14,15,16,17 0-0 ? * * *") -// @Scheduled(cron = "0 9,12 * * *") -// @Scheduled(cron = "0 */5 * * * *") - public void checkForUpdates() { - if (internetConnectivityService.isInternetAvailable()){ - LOG.info("checking for updates..."); - moduleRepository.findAllByActiveAndGitHubLinkIsNotNull() - .forEach(this::checkUpdates); +// public void checkForUpdates() { +// LOG.info("checking for updates..."); +// moduleRepository.findAllByActiveAndGitHubLinkIsNotNull() +// .stream() +// .map(module -> checkUpdates(module)) // .collect(Collectors.toList()); - } else { - LOG.info("Could not check for updates. No internet connection."); - } - } +// } /** * Checks updates * @param module * @return Module */ - private void checkUpdates(Module module){ - LOG.info("Attempting to check for updates for {}", module.getName()); + private Module checkUpdates(Module module){ ResponseEntity responseEntity; RestTemplate restTemplate = new RestTemplate(); HttpHeaders headers = new HttpHeaders(); @@ -64,38 +55,33 @@ private void checkUpdates(Module module){ String apiUrl = module.getGitHubLink(); LOG.info("github url {}", apiUrl); HttpEntity requestEntity = new HttpEntity<>(headers); + // handle this for case when there is no network, it shouldn't throw and error + responseEntity = restTemplate.exchange(apiUrl, HttpMethod.GET, requestEntity, String.class); + if (responseEntity.getStatusCode() == HttpStatus.OK) { - try { - responseEntity = restTemplate.exchange(apiUrl, HttpMethod.GET, requestEntity, String.class); - if (responseEntity.getStatusCode() == HttpStatus.OK) { - - try { - JSONObject json = new JSONObject(responseEntity.getBody()); - String latestVersion = json.getString(TAG_NAME); - LOG.info("latestVersion is {}", latestVersion); - module.setLatestVersion(latestVersion); - JSONArray js = new JSONArray(json.getString(ASSETS)); + try { + JSONObject json = new JSONObject(responseEntity.getBody()); + String latestVersion = json.getString(TAG_NAME); + LOG.info("latestVersion is {}", latestVersion); + module.setLatestVersion(latestVersion); + JSONArray js = new JSONArray(json.getString(ASSETS)); - for (int i = 0; i < js.length(); i++) { - JSONObject downloadUrl = js.getJSONObject(i); - String downloadLink = downloadUrl.getString(BROWSER_DOWNLOAD_URL); - LOG.info("downloadLink is {}", downloadLink); - if (downloadLink.contains(DOT_JAR)) { - module.setDownloadUrl(downloadLink); - module.setLastSuccessfulUpdateCheck(LocalDateTime.now()); - break; - } + for(int i=0; i < js.length(); i++) { + JSONObject downloadUrl = js.getJSONObject(i); + String downloadLink = downloadUrl.getString(BROWSER_DOWNLOAD_URL); + LOG.info("downloadLink is {}", downloadLink); + if(downloadLink.contains(DOT_JAR)){ + module.setDownloadUrl(downloadLink); + module.setLastSuccessfulUpdateCheck(LocalDateTime.now()); + break; } - } catch (JSONException e) { -// e.printStackTrace(); - throw new RuntimeException(e); } - + } catch (JSONException e) { + e.printStackTrace(); + throw new RuntimeException(e); } - moduleRepository.save(module); - } catch (Exception e) { - LOG.warn("There was an error checking for updates"); -// throw new RuntimeException("Could not check for updates"); + } + return moduleRepository.save(module); } } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/service/OrganisationUnitService.java b/base-module/src/main/java/org/lamisplus/modules/base/service/OrganisationUnitService.java index 6c12cd2a..d9821094 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/service/OrganisationUnitService.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/service/OrganisationUnitService.java @@ -2,6 +2,8 @@ import lombok.RequiredArgsConstructor; import lombok.extern.slf4j.Slf4j; +import org.lamisplus.modules.base.domain.dto.OrganisationUnitIdentifierDto; +import org.lamisplus.modules.base.domain.mapper.OrganisationUnitIdentifierMapper; import org.springframework.beans.BeanUtils; import org.lamisplus.modules.base.controller.apierror.EntityNotFoundException; import org.lamisplus.modules.base.controller.apierror.IllegalTypeException; @@ -34,6 +36,7 @@ public class OrganisationUnitService { private final OrganisationUnitRepository organisationUnitRepository; private final OrganisationUnitIdentifierRepository organisationUnitIdentifierRepository; private final OrganisationUnitHierarchyRepository organisationUnitHierarchyRepository; + private final OrganisationUnitIdentifierMapper identifierMapper; public List save( Long parentOrganisationUnitId, @@ -120,6 +123,14 @@ public OrganisationUnit getOrganizationUnit(Long id) { return organizationOptional.get (); } + public Page searchOrganizationUnit(String search, Pageable pageable) { + String searchInput = search.equals("*") ? "%%" : "%"+ search + "%"; + + return organisationUnitIdentifierRepository + .searchOrganisationUnitsPage(searchInput, pageable) + .map(identifierMapper::identifierToDto); + } + public List getOrganisationUnitByParentOrganisationUnitId(Long id) { if(id != null && id > IP_CODE){ List mappings = organisationUnitRepository.findByOrgUnitInIp(id); diff --git a/base-module/src/main/java/org/lamisplus/modules/base/service/RoleService.java b/base-module/src/main/java/org/lamisplus/modules/base/service/RoleService.java index a14afda0..20f2e1d7 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/service/RoleService.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/service/RoleService.java @@ -14,10 +14,9 @@ import org.springframework.transaction.annotation.Transactional; import org.springframework.web.multipart.MultipartFile; -import javax.persistence.EntityManager; -import javax.persistence.PersistenceContext; import java.io.IOException; import java.util.*; +import java.util.stream.Collectors; import static org.lamisplus.modules.base.util.Constants.ArchiveStatus.UN_ARCHIVED; @@ -48,6 +47,7 @@ public void save(RoleDTO roleDTO) { role.setPermission(permissions); role.setMenu(menus); role.setArchived(UN_ARCHIVED); + role.setExcludeRoles(roleDTO.getExcludeRoles()); if(StringUtils.isBlank(role.getCode())) { role.setCode(UUID.randomUUID().toString()); @@ -93,7 +93,7 @@ private HashSet getPermissions(List permissions) { } permissionsSet.add(permissionToAdd); }catch(Exception e){ - e.printStackTrace(); +// e.printStackTrace(); } } return permissionsSet; @@ -164,9 +164,13 @@ public String importRoles(MultipartFile file) throws IOException { HashSet permissions = getPermissions(roleDTO.getPermissions()); HashSet menus = getMenusByNameOnImport(roleDTO.getMenus()); + LOG.info(roleDTO.toString()); + role.setPermission(permissions); + role.setExcludeRoles(getExcludedRoleIdsFromNames(roleDTO.getExcludeRoles())); role.setMenu(menus); role.setArchived(UN_ARCHIVED); + LOG.info("Role: {}", role.toString()); if (StringUtils.isBlank(role.getCode())) { role.setCode(UUID.randomUUID().toString()); @@ -176,9 +180,48 @@ public String importRoles(MultipartFile file) throws IOException { } } catch (Exception e){ LOG.info("An error occurred when importing roles. {}", e.getMessage()); + e.printStackTrace(); throw new IOException(e.getMessage()); } return "Roles Imported Successfully"; } + + public Role updateRole(long id, RoleDTO roleDTO) { + Optional roleOptional = roleRepository.findById(id); + if(!roleOptional.isPresent())throw new EntityNotFoundException(Role.class, "Id", id +""); + Role updatedRole = roleOptional.get(); + + try{ + HashSet permissionsSet = getPermissions(roleDTO.getPermissions()); + updatedRole.setPermission(permissionsSet); + updatedRole.setName(roleDTO.getName()); + updatedRole.setMenu(getMenusById(roleDTO.getMenus())); + updatedRole.setExcludeRoles(roleDTO.getExcludeRoles()); + } catch (Exception e){ + LOG.info("Error updating role: {}", e.getMessage()); + throw new RuntimeException(e.getMessage()); + } + return roleRepository.save(updatedRole); + } + + private String getExcludedRoleIdsFromNames(String names) { + LOG.info(names); + if (names == null){ + return null; + } + if (!names.isEmpty()) { + + Set roleNames = Arrays.stream(names.split(",")) + .map(String::trim) + .filter(name -> !name.isEmpty()) + .collect(Collectors.toSet()); + + return roleRepository.findAllInRolesNames(roleNames).stream() + .map(each-> String.valueOf(each.getId())) + .collect(Collectors.joining(",")); + } + return null; + } + } diff --git a/base-module/src/main/java/org/lamisplus/modules/base/service/UserService.java b/base-module/src/main/java/org/lamisplus/modules/base/service/UserService.java index 53565809..6c08eac8 100644 --- a/base-module/src/main/java/org/lamisplus/modules/base/service/UserService.java +++ b/base-module/src/main/java/org/lamisplus/modules/base/service/UserService.java @@ -8,7 +8,6 @@ import org.lamisplus.modules.base.controller.apierror.RecordExistException; import org.lamisplus.modules.base.domain.dto.ApplicationUserOrganisationUnitDTO; import org.lamisplus.modules.base.domain.dto.FacilitySetupDTO; -import org.lamisplus.modules.base.domain.dto.ManagementDto; import org.lamisplus.modules.base.domain.dto.UserDTO; import org.lamisplus.modules.base.domain.entities.ApplicationUserOrganisationUnit; import org.lamisplus.modules.base.domain.entities.OrganisationUnit; @@ -21,6 +20,7 @@ import org.lamisplus.modules.base.domain.repositories.UserRepository; import org.lamisplus.modules.base.security.RolesConstants; import org.lamisplus.modules.base.security.SecurityUtils; +import org.springframework.cache.annotation.Cacheable; import org.springframework.data.domain.Page; import org.springframework.data.domain.Pageable; import org.springframework.http.ResponseEntity; @@ -31,7 +31,6 @@ import java.util.*; import java.util.stream.Collectors; -import static org.lamisplus.modules.base.util.Constants.ArchiveStatus.ARCHIVED; import static org.lamisplus.modules.base.util.Constants.ArchiveStatus.UN_ARCHIVED; @@ -138,7 +137,8 @@ public User registerOrUpdateUser(UserDTO userDTO, String password, Boolean updat roles.add(defaultUserRole); newUser.setRole(roles); } else { - HashSet userRoles = getRolesFromStringSet(userDTO.getRoles()); +// HashSet userRoles = getRolesFromStringSet(userDTO.getRoles()); + HashSet userRoles = getRolesFromIdSet(userDTO.getRoles()); if (defaultUserRole != null) userRoles.add(defaultUserRole); @@ -201,8 +201,8 @@ public Page getAllManagedUsers(Pageable pageable) { return userRepository.findAllByArchived(pageable, 0).map(UserDTO::new); } @Transactional(readOnly = true) +// @Cacheable(value = "user") public List getAllManagedUsers() { -// LOG.info("Page size: {}, Page Number: {}", pageable.getPageSize(), pageable.getPageNumber()); return userRepository.findAllByArchived(0).stream().map(UserDTO::new).collect(Collectors.toList()); } @@ -230,6 +230,24 @@ private HashSet getRolesFromStringSet(Set roles) { } return roleSet; } + private HashSet getRolesFromIdSet(Set roles) { + HashSet roleSet = new HashSet<>(); + Role roleToAdd = new Role(); + for (String r : roles) { + // add roles by either id or name + if (null != r) { + roleToAdd = roleRepository.findById(Long.valueOf(r)).orElseThrow( + () -> new RuntimeException("Role not found by ID: " + r) + ); + + } else { + ResponseEntity.badRequest(); + return null; + } + roleSet.add(roleToAdd); + } + return roleSet; + } @Transactional public List getAllUserByRole(Long roleId) { diff --git a/base-module/src/main/resources/installers/base/schema/schema.xml b/base-module/src/main/resources/installers/base/schema/schema.xml index c976b3fa..a11691dc 100644 --- a/base-module/src/main/resources/installers/base/schema/schema.xml +++ b/base-module/src/main/resources/installers/base/schema/schema.xml @@ -827,4 +827,11 @@ ADD CONSTRAINT unique_base_application_codeset_code UNIQUE (code); + + + + DELETE FROM public.databasechangelog + WHERE md5sum = '8:e8a114aca332bb978c7b03eec7793e97'; + + \ No newline at end of file diff --git a/base-module/src/main/resources/installers/base/schema/sql/insert_script_age_distribution_art.sql b/base-module/src/main/resources/installers/base/schema/sql/insert_script_age_distribution_art.sql new file mode 100644 index 00000000..b59cd4a9 --- /dev/null +++ b/base-module/src/main/resources/installers/base/schema/sql/insert_script_age_distribution_art.sql @@ -0,0 +1,134 @@ +INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, created_date, created_by, last_modified_date, last_modified_by, archived, x_axis_field, y_axis_field, series_name_field, module +) VALUES ('93ac4f85-2dce-498e-8536-1e5bf4d943b4', 'AGE_DISTRIBUTION_POSITIVE_ART', 'Age Distribution Positive On ART for a fiscal year', 'Age Distribution Positive On ART', 'core', 0,'column', 'fa-heartbeat', + 'WITH fy AS ( + SELECT + CASE + WHEN EXTRACT(MONTH FROM CURRENT_DATE) >= 10 + THEN MAKE_DATE(CAST(EXTRACT(YEAR FROM CURRENT_DATE) AS INTEGER), 10, 1) + ELSE + MAKE_DATE((CAST(EXTRACT(YEAR FROM CURRENT_DATE) AS INTEGER) - 1), 10, 1) + END AS start_date, + + CASE + WHEN EXTRACT(MONTH FROM CURRENT_DATE) >= 10 + THEN MAKE_DATE((CAST(EXTRACT(YEAR FROM CURRENT_DATE) AS INTEGER) + 1), 10, 1) + ELSE + MAKE_DATE(CAST(EXTRACT(YEAR FROM CURRENT_DATE) AS INTEGER), 10, 1) + END AS end_date +) +SELECT ''0-14'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) BETWEEN 0 AND 14 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId + +UNION ALL +SELECT ''15-19'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) BETWEEN 15 AND 19 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId + + +UNION ALL +SELECT ''20-24'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) BETWEEN 20 AND 29 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId + + UNION ALL +SELECT ''25-29'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) BETWEEN 25 AND 29 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId + + + UNION ALL +SELECT ''30-34'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) BETWEEN 30 AND 34 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId + + + UNION ALL +SELECT ''35-39'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) BETWEEN 35 AND 39 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId + + + UNION ALL +SELECT ''40-44'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) BETWEEN 40 AND 44 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId + + + UNION ALL +SELECT ''45- 49'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) BETWEEN 45 AND 49 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId + + + + UNION ALL +SELECT ''50+'' AS age_distribution, + COALESCE(SUM(CASE WHEN EXTRACT(YEAR FROM AGE(NOW(), pp.date_of_birth)) >= 50 THEN 1 ELSE 0 END), 0) AS count +FROM hts_client hc +JOIN hiv_art_clinical hac ON hac.person_uuid = hc.person_uuid AND hac.is_commencement IS TRUE +JOIN patient_person pp ON pp.uuid = hc.person_uuid +JOIN fy ON TRUE +WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.facility_id = ?facilityId', '2025-07-30 14:24:28.86492', 'Schema', '2025-07-30 14:24:28.86492', 'Schema', 0, 'age_distribution', 'count', null, 'HivModule'); + + diff --git a/base-module/src/main/resources/installers/base/schema/sql/insert_script_for_dashboard_charts.sql b/base-module/src/main/resources/installers/base/schema/sql/insert_script_for_dashboard_charts.sql new file mode 100644 index 00000000..23a9658f --- /dev/null +++ b/base-module/src/main/resources/installers/base/schema/sql/insert_script_for_dashboard_charts.sql @@ -0,0 +1,229 @@ +-- Delete existing chart records to avoid conflicts +DELETE FROM public.chart +WHERE indicator_name IN ( + 'TOTAL_RECORDS', + 'TOTAL_TESTED_FOR_HIV', + 'TOTAL_POSITIVE', + 'EVER_ENROLLED', + 'PATIENT_ENROLLMENT_BY_SEX', + 'PATIENT_ENROLLMENT_TRENDS_BY_YEAR_AND_SEX' + ); + +-- 2 Insert updated chart definitions + +-- Total Records +INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, + created_date, created_by, last_modified_date, last_modified_by, archived, + x_axis_field, y_axis_field, series_name_field, module +) +VALUES ( + '71f2ee2b-6299-41db-9bd0-bb60f1a1410b', + 'TOTAL_RECORDS', + 'Total Records', + 'Total Records', + 'core', + 0, + 'card', + 'fa-users', + 'SELECT COUNT(DISTINCT uuid) FROM patient_person WHERE facility_id=?facilityId AND archived=0', + '2025-07-30 14:24:28.86492', + 'Schema', + '2025-07-30 14:24:28.86492', + 'Schema', + 0, + NULL, NULL, NULL, + 'PatientModule' + ); + +-- Total Tested for HIV +INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, + created_date, created_by, last_modified_date, last_modified_by, archived, + x_axis_field, y_axis_field, series_name_field, module +) +VALUES ( + 'bdd208a4-a646-486d-9898-c30cd7e907d2', + 'TOTAL_TESTED_FOR_HIV', + 'Total Tested For HIV', + 'Total Tested For HIV', + 'core', + 1, + 'card', + 'fa-user-md', + 'WITH fy AS ( + SELECT + CASE + WHEN EXTRACT(MONTH FROM CURRENT_DATE) >= 10 + THEN MAKE_DATE(EXTRACT(YEAR FROM CURRENT_DATE)::int, 10, 1) + ELSE + MAKE_DATE((EXTRACT(YEAR FROM CURRENT_DATE)::int - 1), 10, 1) + END AS start_date, + + CASE + WHEN EXTRACT(MONTH FROM CURRENT_DATE) >= 10 + THEN MAKE_DATE((EXTRACT(YEAR FROM CURRENT_DATE)::int + 1), 10, 1) + ELSE + MAKE_DATE(EXTRACT(YEAR FROM CURRENT_DATE)::int, 10, 1) + END AS end_date + ) + SELECT + COUNT(*) AS total_persons_tested + FROM hts_client, fy + WHERE hiv_test_result IS NOT NULL + AND date_visit >= fy.start_date + AND date_visit < fy.end_date + AND archived=0 + AND facility_id = ?facilityId', + '2025-07-30 14:24:28.86492', + 'Schema', + '2025-07-30 14:24:28.86492', + 'Schema', + 0, + NULL, NULL, NULL, + 'HtsModule' + ); + +-- Total HIV Positive +INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, + created_date, created_by, last_modified_date, last_modified_by, archived, + x_axis_field, y_axis_field, series_name_field, module +) +VALUES ( + 'd43cffcf-8690-4b55-a7a4-d2c404fb0fe7', + 'TOTAL_POSITIVE', + 'Total HIV Positive', + 'Total Positive', + 'core', + 2, + 'card', + 'fa-plus-square', + 'WITH fy AS ( + SELECT + CASE + WHEN EXTRACT(MONTH FROM CURRENT_DATE) >= 10 + THEN MAKE_DATE(EXTRACT(YEAR FROM CURRENT_DATE)::int, 10, 1) + ELSE + MAKE_DATE((EXTRACT(YEAR FROM CURRENT_DATE)::int - 1), 10, 1) + END AS start_date, + + CASE + WHEN EXTRACT(MONTH FROM CURRENT_DATE) >= 10 + THEN MAKE_DATE((EXTRACT(YEAR FROM CURRENT_DATE)::int + 1), 10, 1) + ELSE + MAKE_DATE(EXTRACT(YEAR FROM CURRENT_DATE)::int, 10, 1) + END AS end_date + ) + SELECT + COUNT(DISTINCT hc.person_uuid) AS total_tested_positive + FROM hts_client hc + JOIN fy ON TRUE + WHERE hc.hiv_test_result = ''Positive'' + AND hc.date_visit >= fy.start_date + AND hc.date_visit < fy.end_date + AND hc.archived=0 + AND hc.facility_id = ?facilityId', + '2025-07-30 14:24:28.86492', + 'Schema', + '2025-07-30 14:24:28.86492', + 'Schema', + 0, + NULL, NULL, NULL, + 'HtsModule' + ); + +-- Ever Enrolled +INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, + created_date, created_by, last_modified_date, last_modified_by, archived, + x_axis_field, y_axis_field, series_name_field, module +) +VALUES ( + 'c1ecbdab-ef42-4435-af2a-5e16d283b097', + 'EVER_ENROLLED', + 'Ever Enrolled Into HIV', + 'Ever Enrolled', + 'core', + 3, + 'card', + 'fa-heartbeat', + 'SELECT + COUNT(1) AS total_enrolled + FROM patient_person p + INNER JOIN hiv_enrollment he ON p.uuid=he.person_uuid + WHERE he.archived = 0 + AND p.archived=0 + AND he.facility_id = ?facilityId', + '2025-07-30 14:24:28.86492', + 'Schema', + '2025-07-30 14:24:28.86492', + 'Schema', + 0, + NULL, NULL, NULL, + 'HivModule' + ); + +-- Patient Enrollment by Sex +INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, + created_date, created_by, last_modified_date, last_modified_by, archived, + x_axis_field, y_axis_field, series_name_field, module +) +VALUES ( + '94224e17-df1a-42a5-8d51-db9592a5a016', + 'PATIENT_ENROLLMENT_BY_SEX', + 'Patient Enrollment By Sex', + 'Patient Enrollment By Sex', + 'core', + 0, + 'pie', + 'fa-heartbeat', + 'SELECT + CASE WHEN sex = ''Female'' THEN ''Female'' + WHEN sex = ''Male'' THEN ''Male'' + ELSE ''Others'' END AS name, + COUNT(*) AS count + FROM patient_person + WHERE facility_id=?facilityId AND archived=0 + GROUP BY sex', + '2025-07-30 14:24:28.86492', + 'Schema', + '2025-07-30 14:24:28.86492', + 'Schema', + 0, + 'name', 'count', NULL, + 'PatientModule' + ); + +-- Patient Enrollment Trends by Year and Sex +INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, + created_date, created_by, last_modified_date, last_modified_by, archived, + x_axis_field, y_axis_field, series_name_field, module +) +VALUES ( + 'a835aec0-d41c-48d9-8ec8-382d051fa76d', + 'PATIENT_ENROLLMENT_TRENDS_BY_YEAR_AND_SEX', + 'Patient Enrollment Trends By Year and Sex', + 'Patient Enrollment Trends By Year and Sex', + 'core', + 0, + 'line', + 'fa-heartbeat', + 'SELECT + EXTRACT(YEAR FROM date_of_registration) AS year, + SUM(CASE WHEN sex = ''Male'' THEN 1 ELSE 0 END) AS male, + SUM(CASE WHEN sex = ''Female'' THEN 1 ELSE 0 END) AS female + FROM patient_person + WHERE facility_id=1665 AND archived = 0 + GROUP BY EXTRACT(YEAR FROM date_of_registration) + ORDER BY year', + '2025-07-30 14:24:28.86492', + 'Schema', + '2025-07-30 14:24:28.86492', + 'Schema', + 0, + 'year', NULL, NULL, + 'PatientModule' + ); diff --git a/base-module/src/main/resources/installers/base/schema/sql/update_base_organisation_unit.sql b/base-module/src/main/resources/installers/base/schema/sql/update_base_organisation_unit.sql new file mode 100644 index 00000000..b42b1e7e --- /dev/null +++ b/base-module/src/main/resources/installers/base/schema/sql/update_base_organisation_unit.sql @@ -0,0 +1,9 @@ +UPDATE public.base_organisation_unit bou +SET name = SPLIT_PART(bou.name, ' ', 1) || ' Community Center' + FROM base_organisation_unit_identifier boui +WHERE bou.id = boui.organisation_unit_id AND boui.code = ANY (ARRAY['xCya42gPOnU','TCJpqmlk9sK', 'iPViA45Cl3G', 'E1PW0PYkvDx', 'f0J277xHATh', 'cmkm8UQpvWk', 'ANblU3SrJb0', + 'rAiIIiFFqMN', 'fVcjpsyeO4q', 'cYdxH1tF7Di', 'R3rzxyzlNgM']); + +UPDATE public.base_organisation_unit bou SET name = 'Birnin Kebbi Community Center' + FROM base_organisation_unit_identifier boui +WHERE bou.id = boui.organisation_unit_id AND boui.code = 'th3IMCg3lQ1'; \ No newline at end of file diff --git a/base-module/src/main/resources/installers/base/schema/sql/update_patient_enrollment_trends_chart.sql b/base-module/src/main/resources/installers/base/schema/sql/update_patient_enrollment_trends_chart.sql new file mode 100644 index 00000000..e035fc1e --- /dev/null +++ b/base-module/src/main/resources/installers/base/schema/sql/update_patient_enrollment_trends_chart.sql @@ -0,0 +1,9 @@ +UPDATE chart set query = 'SELECT + EXTRACT(YEAR FROM date_of_registration) AS year, + SUM(CASE WHEN sex = ''Male'' THEN 1 ELSE 0 END) AS male, + SUM(CASE WHEN sex = ''Female'' THEN 1 ELSE 0 END) AS female + FROM patient_person + WHERE facility_id=?facilityId AND archived = 0 + GROUP BY EXTRACT(YEAR FROM date_of_registration) + ORDER BY year' +WHERE indicator_name = 'PATIENT_ENROLLMENT_TRENDS_BY_YEAR_AND_SEX'; \ No newline at end of file diff --git a/base-module/src/main/resources/installers/base/schema/updates.xml b/base-module/src/main/resources/installers/base/schema/updates.xml index 1ed9a093..bc11488f 100644 --- a/base-module/src/main/resources/installers/base/schema/updates.xml +++ b/base-module/src/main/resources/installers/base/schema/updates.xml @@ -710,4 +710,220 @@ + + + + SELECT COUNT(*) + FROM base_role + WHERE name = 'RDE'; + + + + INSERT INTO public.base_role(id, name, code, date_created, created_by, date_modified, modified_by, archived) + VALUES ((SELECT MAX(id) + 1 FROM base_role), 'RDE', gen_random_uuid(), NOW(), 'Joshua Gabriel', NOW(), 'Joshua Gabriel', 0); + + INSERT INTO public.base_role_permission (role_id, permission_id) + SELECT r.id, p.id + FROM base_role r + JOIN base_permission p ON p.archived = 0 + WHERE r.name = 'RDE' AND p.id IN (1,2,3,4, 166);; + + INSERT INTO base_role_menu (role_id, menu_id) + SELECT r.id, m.id + FROM base_role r + JOIN base_menu m ON m.archived = 0 + WHERE r.name = 'RDE' AND m.name NOT IN ('TriageModule', 'LaboratoryModule', 'Check-in Setting', 'Consultation', 'Pharmacy'); + + + + + + + + + + ALTER TABLE base_role ADD COLUMN exclude_roles CHARACTER VARYING; + + + + + ALTER TABLE base_permission + DROP CONSTRAINT module_name_fk; + + ALTER TABLE base_permission + ADD CONSTRAINT module_name_fk FOREIGN KEY (module_name) + REFERENCES base_module (name) + ON UPDATE NO ACTION + ON DELETE SET NULL + NOT VALID; + + + + + + + SELECT COUNT(*) FROM public.base_menu WHERE UUID ='44b1c981-312d-461a-999a-5b2cc6fe0ab0'; + + + + INSERT INTO public.base_menu( + name, state, type, level, "position", icon, code, uuid, tooltip, breadcrumb, disabled, module_id, parent_id, archived, url) + VALUES ('Chart Config', '', '', '', 1, '', '', '44b1c981-312d-461a-999a-5b2cc6fe0ab0', 'Chart Configuration', '', false, null, 15, 0, 'chart-config'); + + + + + + + + + + + + + + + CREATE TABLE IF NOT EXISTS chart + ( + id uuid, + indicator_name character varying(255) , + display_name character varying(255), + description character varying(255), + location character varying(255), + module character varying(255), + type character varying(255), + icon character varying(255) , + query character varying(10000), + created_date timestamp without time zone, + created_by character varying(255), + last_modified_date timestamp without time zone, + last_modified_by character varying(255), + x_axis_field character varying(255), + y_axis_field character varying(255), + series_name_field character varying(255), + archived integer, + "position" integer DEFAULT 0, + CONSTRAINT pk_chart PRIMARY KEY (indicator_name), + CONSTRAINT id_chart_unique UNIQUE (id) + ); + + INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, created_date, created_by, last_modified_date, last_modified_by, archived, x_axis_field, y_axis_field, series_name_field, module + ) VALUES ('71f2ee2b-6299-41db-9bd0-bb60f1a1410b', 'TOTAL_RECORDS', 'Total Records', 'Total Records', 'core', 0, 'card', 'fa-users', 'SELECT COUNT(1) FROM patient_person WHERE facility_id=?facilityId AND archived=0', '2025-07-30 14:24:28.86492', 'Schema', '2025-07-30 14:24:28.86492', 'Schema', 0, null, null, null, 'PatientModule'); + + INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, created_date, created_by, last_modified_date, last_modified_by, archived, x_axis_field, y_axis_field, series_name_field, module + ) VALUES ('bdd208a4-a646-486d-9898-c30cd7e907d2', 'TOTAL_TESTED_FOR_HIV', 'Total tested For HIV', 'Total Tested For Hiv', 'core', 1,'card', 'fa-user-md', 'SELECT COUNT (uuid) totalHTSCount FROM hts_client WHERE archived = 0 AND person_uuid IS NOT NULL AND hiv_test_result IS NOT NULL AND facility_id=?facilityId', '2025-07-30 14:24:28.86492', 'Schema', '2025-07-30 14:24:28.86492', 'Schema', 0, null, null, null, 'HtsModule'); + + INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, created_date, created_by, last_modified_date, last_modified_by, archived, x_axis_field, y_axis_field, series_name_field, module + ) VALUES ('d43cffcf-8690-4b55-a7a4-d2c404fb0fe7', 'TOTAL_POSITIVE', 'Total HIV Positive', 'Total Positive', 'core', 2,'card', 'fa-plus-square', + 'SELECT COUNT (uuid) totalHTSCount FROM hts_client + WHERE archived = 0 AND person_uuid IS NOT NULL AND hiv_test_result IS NOT NULL + AND hiv_test_result ILIKE ''%Positive%'' + AND facility_id=?facilityId + ', '2025-07-30 14:24:28.86492', 'Schema', '2025-07-30 14:24:28.86492', 'Schema', 0, null, null, null, 'HtsModule'); + + INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, created_date, created_by, last_modified_date, last_modified_by, archived, x_axis_field, y_axis_field, series_name_field, module + ) VALUES ('c1ecbdab-ef42-4435-af2a-5e16d283b097', 'EVER_ENROLLED', 'Ever Enrolled Into HIV', 'Ever Enrolled', 'core', 3,'card', 'fa-heartbeat', + 'SELECT COUNT(1) FROM hiv_enrollment WHERE facility_id=?facilityId AND archived=0', '2025-07-30 14:24:28.86492', 'Schema', '2025-07-30 14:24:28.86492', 'Schema', 0, null, null, null, 'HivModule'); + + INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, created_date, created_by, last_modified_date, last_modified_by, archived, x_axis_field, y_axis_field, series_name_field, module + ) VALUES ('94224e17-df1a-42a5-8d51-db9592a5a016', 'PATIENT_ENROLLMENT_BY_SEX', 'Patient Enrollment By Sex', 'Patient Enrollment By Sex', 'core', 0,'pie', 'fa-heartbeat', + 'SELECT + CASE WHEN sex = ''Female'' THEN ''Female'' + WHEN sex = ''Male'' THEN ''Male'' + ELSE ''Others'' END AS name, + COUNT(*) AS count + FROM patient_person WHERE facility_id=?facilityId GROUP BY sex', '2025-07-30 14:24:28.86492', 'Schema', '2025-07-30 14:24:28.86492', 'Schema', 0, 'name', 'count', null, 'PatientModule'); + + INSERT INTO public.chart( + id, indicator_name, display_name, description, location, position, type, icon, query, created_date, created_by, last_modified_date, last_modified_by, archived, x_axis_field, y_axis_field, series_name_field, module + ) VALUES ('a835aec0-d41c-48d9-8ec8-382d051fa76d', 'PATIENT_ENROLLMENT_TRENDS_BY_YEAR_AND_SEX', 'Patient Enrollment Trends By Year and Sex', 'Patient Enrollment Trends By Year and Sex', 'core', 0,'line', 'fa-heartbeat', + 'SELECT EXTRACT(YEAR FROM date_of_registration) AS year, + SUM(CASE WHEN sex = ''Male'' THEN 1 ELSE 0 END) AS male, + SUM(CASE WHEN sex = ''Female'' THEN 1 ELSE 0 END) AS female + FROM patient_person WHERE facility_id=?facilityId + GROUP BY EXTRACT(YEAR FROM date_of_registration) order by year', '2025-07-30 14:24:28.86492', 'Schema', '2025-07-30 14:24:28.86492', 'Schema', 0, 'year', null, null, 'PatientModule'); + + + + + + + + + + + + INSERT INTO public.base_application_user_role (user_id, role_id) + SELECT bau.id, rde.id + FROM public.base_application_user bau + JOIN public.base_application_user_role baur ON bau.id = baur.user_id + JOIN public.base_role br ON br.id = baur.role_id + JOIN public.base_role rde ON rde.name = 'RDE' + WHERE br.name ILIKE 'Super Admin' + AND NOT EXISTS ( + SELECT 1 + FROM public.base_application_user_role existing + WHERE existing.user_id = bau.id AND existing.role_id = rde.id + ); + + + + + + INSERT INTO base_application_user_role (user_id, role_id) + SELECT id, (SELECT id from base_role where name = 'RDE') + FROM base_application_user bau + WHERE bau.archived = 0 + AND NOT EXISTS ( + SELECT 1 + FROM base_application_user_role r + WHERE r.user_id = bau.id AND r.role_id = (SELECT id from base_role where name = 'RDE') + ); + + + + + + + + + + + + + + + + + + + UPDATE public.base_organisation_unit bou SET name = 'Jalingo Community Center' + FROM base_organisation_unit_identifier boui + WHERE bou.id = boui.organisation_unit_id AND boui.code = 'cmkm8UQpvWk'; + + + + + diff --git a/base-module/src/test/java/org/lamisplus/modules/base/BaseModuleTest.java b/base-module/src/test/java/org/lamisplus/modules/base/BaseModuleTest.java index 0b2a1a51..68d4a3c1 100644 --- a/base-module/src/test/java/org/lamisplus/modules/base/BaseModuleTest.java +++ b/base-module/src/test/java/org/lamisplus/modules/base/BaseModuleTest.java @@ -1,56 +1,56 @@ -package org.lamisplus.modules.base; - -import com.foreach.across.config.AcrossContextConfigurer; -import com.foreach.across.core.AcrossContext; -import com.foreach.across.test.AcrossTestConfiguration; -import com.foreach.across.test.AcrossWebAppConfiguration; -import io.zonky.test.db.AutoConfigureEmbeddedDatabase; -import io.zonky.test.db.postgres.junit5.SingleInstancePostgresExtension; -import lombok.extern.slf4j.Slf4j; -import org.junit.jupiter.api.Test; -import org.junit.jupiter.api.extension.ExtendWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.PropertySource; -import org.springframework.test.annotation.DirtiesContext; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.TestExecutionListeners; -import org.springframework.test.context.junit.jupiter.SpringExtension; -import org.springframework.test.context.support.DependencyInjectionTestExecutionListener; -import org.springframework.test.context.support.DirtiesContextTestExecutionListener; -import org.springframework.test.context.transaction.TransactionalTestExecutionListener; - -import static org.junit.jupiter.api.Assertions.assertNotNull; - -@ExtendWith({SpringExtension.class, SingleInstancePostgresExtension.class}) -@DirtiesContext -@ContextConfiguration -@AcrossWebAppConfiguration -@AutoConfigureEmbeddedDatabase(beanName = "acrossDataSource") -@TestExecutionListeners({ - DependencyInjectionTestExecutionListener.class, - DirtiesContextTestExecutionListener.class, - TransactionalTestExecutionListener.class -}) -@Slf4j -public class BaseModuleTest { - - @Autowired - AcrossContext acrossContext; - - @Test - public void should_initialize_module() { - assertNotNull(acrossContext.getModule(BaseModule.NAME)); - } - - @Configuration - @AcrossTestConfiguration - @PropertySource(value = "classpath:across-test.properties") - static class Config implements AcrossContextConfigurer { - - @Override - public void configure(AcrossContext context) { - context.addModule(new BaseModule()); - } - } -} +//package org.lamisplus.modules.base; +// +//import com.foreach.across.config.AcrossContextConfigurer; +//import com.foreach.across.core.AcrossContext; +//import com.foreach.across.test.AcrossTestConfiguration; +//import com.foreach.across.test.AcrossWebAppConfiguration; +//import io.zonky.test.db.AutoConfigureEmbeddedDatabase; +//import io.zonky.test.db.postgres.junit5.SingleInstancePostgresExtension; +//import lombok.extern.slf4j.Slf4j; +//import org.junit.jupiter.api.Test; +//import org.junit.jupiter.api.extension.ExtendWith; +//import org.springframework.beans.factory.annotation.Autowired; +//import org.springframework.context.annotation.Configuration; +//import org.springframework.context.annotation.PropertySource; +//import org.springframework.test.annotation.DirtiesContext; +//import org.springframework.test.context.ContextConfiguration; +//import org.springframework.test.context.TestExecutionListeners; +//import org.springframework.test.context.junit.jupiter.SpringExtension; +//import org.springframework.test.context.support.DependencyInjectionTestExecutionListener; +//import org.springframework.test.context.support.DirtiesContextTestExecutionListener; +//import org.springframework.test.context.transaction.TransactionalTestExecutionListener; +// +//import static org.junit.jupiter.api.Assertions.assertNotNull; +// +//@ExtendWith({SpringExtension.class, SingleInstancePostgresExtension.class}) +//@DirtiesContext +//@ContextConfiguration +//@AcrossWebAppConfiguration +//@AutoConfigureEmbeddedDatabase(beanName = "acrossDataSource") +//@TestExecutionListeners({ +// DependencyInjectionTestExecutionListener.class, +// DirtiesContextTestExecutionListener.class, +// TransactionalTestExecutionListener.class +//}) +//@Slf4j +//public class BaseModuleTest { +// +// @Autowired +// AcrossContext acrossContext; +// +// @Test +// public void should_initialize_module() { +// assertNotNull(acrossContext.getModule(BaseModule.NAME)); +// } +// +// @Configuration +// @AcrossTestConfiguration +// @PropertySource(value = "classpath:across-test.properties") +// static class Config implements AcrossContextConfigurer { +// +// @Override +// public void configure(AcrossContext context) { +// context.addModule(new BaseModule()); +// } +// } +//} diff --git a/base-module/src/test/java/org/lamisplus/modules/base/TestBaseModuleModuleConventions.java b/base-module/src/test/java/org/lamisplus/modules/base/TestBaseModuleModuleConventions.java index 8cd11d53..1728a953 100644 --- a/base-module/src/test/java/org/lamisplus/modules/base/TestBaseModuleModuleConventions.java +++ b/base-module/src/test/java/org/lamisplus/modules/base/TestBaseModuleModuleConventions.java @@ -1,12 +1,12 @@ -package org.lamisplus.modules.base; - -import com.foreach.across.core.AcrossModule; -import com.foreach.across.test.AbstractAcrossModuleConventionsTest; - -public class TestBaseModuleModuleConventions extends AbstractAcrossModuleConventionsTest -{ - @Override - protected AcrossModule createModule() { - return new BaseModule(); - } -} +//package org.lamisplus.modules.base; +// +//import com.foreach.across.core.AcrossModule; +//import com.foreach.across.test.AbstractAcrossModuleConventionsTest; +// +//public class TestBaseModuleModuleConventions extends AbstractAcrossModuleConventionsTest +//{ +// @Override +// protected AcrossModule createModule() { +// return new BaseModule(); +// } +//} diff --git a/db-config.yml b/db-config.yml index 491b5140..3813c93d 100644 --- a/db-config.yml +++ b/db-config.yml @@ -5,7 +5,7 @@ spring: driver-class-name: org.postgresql.Driver username: postgres password: admin - url: jdbc:postgresql://localhost:5432/lamisplusYenagoa + url: jdbc:postgresql://localhost:5432/chart_db hibernate: ddl-auto: none event.merge.entry_copy_observer: allow @@ -34,7 +34,7 @@ lamisplus: driver-class-name: org.postgresql.Driver username: postgres password: admin - url: jdbc:postgresql://localhost:5432/lamisplusYenagoa + url: jdbc:postgresql://localhost:5432/chart_db hikari: auto-commit: true data-source-properties: @@ -53,4 +53,21 @@ lamisplus: timeout: 3000 quality: 80 server: - port: 9090 \ No newline at end of file + port: 9090 + + + +cache: + names: core,module,server_sync,user # The cache regions/names + heap: + size: 100 # Heap size (number of entries) + off-heap: + size: 50 # Off-heap storage size + unit: MB # Unit is MB + expiry: + ttl: # Time-to-live (absolute expiration) + minutes: 1 + idle: # Time-to-idle (inactive expiration) + minutes: 1 + + \ No newline at end of file diff --git a/pg/libcrypto-1_1-x64.dll b/pg/libcrypto-1_1-x64.dll new file mode 100644 index 00000000..0fce851d Binary files /dev/null and b/pg/libcrypto-1_1-x64.dll differ diff --git a/pg/libiconv-2.dll b/pg/libiconv-2.dll new file mode 100644 index 00000000..12a27a94 Binary files /dev/null and b/pg/libiconv-2.dll differ diff --git a/pg/libintl-9.dll b/pg/libintl-9.dll new file mode 100644 index 00000000..82ffaad6 Binary files /dev/null and b/pg/libintl-9.dll differ diff --git a/pg/libpq.dll b/pg/libpq.dll new file mode 100644 index 00000000..c6620b76 Binary files /dev/null and b/pg/libpq.dll differ diff --git a/pg/libssl-1_1-x64.dll b/pg/libssl-1_1-x64.dll new file mode 100644 index 00000000..ae89f5f9 Binary files /dev/null and b/pg/libssl-1_1-x64.dll differ diff --git a/pg/libwinpthread-1.dll b/pg/libwinpthread-1.dll new file mode 100644 index 00000000..2d5ecc2e Binary files /dev/null and b/pg/libwinpthread-1.dll differ diff --git a/pg/pg_dump.exe b/pg/pg_dump.exe new file mode 100644 index 00000000..fea994a7 Binary files /dev/null and b/pg/pg_dump.exe differ diff --git a/pg/pg_restore.exe b/pg/pg_restore.exe new file mode 100644 index 00000000..b2b10159 Binary files /dev/null and b/pg/pg_restore.exe differ diff --git a/pg/zlib1.dll b/pg/zlib1.dll new file mode 100644 index 00000000..70a685d5 Binary files /dev/null and b/pg/zlib1.dll differ diff --git a/pom.xml b/pom.xml index 4c20eddf..aa63f353 100644 --- a/pom.xml +++ b/pom.xml @@ -5,7 +5,7 @@ 4.0.0 org.lamisplus.modules core - 2.2.2.1 + 2.3.0.2 pom diff --git a/query.yml b/query.yml index 0eb694d7..f7b5ab07 100644 --- a/query.yml +++ b/query.yml @@ -133,53 +133,69 @@ query: AND version_iso_20 IS TRUE GROUP BY person_uuid, count, enrollment_date) recent where rank1 = 1 ) recentData ON recentData.person_uuid = result.uuid pmtct-hts-query-name: pmtct-hts - pmtct-hts-query: SELECT pmtct.state as "State", pmtct.lga as "LGA", pmtct.facilityName AS "Facility", - pmtct.uuid AS "Patient ID", pmtct.anc_no AS "ANC number", pmtct.motherCode AS "Mother''s Hospital Num", - pmtct.dateofbirth AS "Mother''s Date of Birth", pmtct.age AS "Age", pmtct.maritalstatus AS "Marital Status", - pmtct.entryPoint AS "Point of Entry", pmtct.modality AS "Modality", pmtct.gaweeks_anc AS "Gestational Age (Weeks) @ First ANC visit", - pmtct.hivTestDate AS "Date tested for HIV", pmtct.hiv_test_result AS "HIV Test result", - pmtct.encounterDate1 AS "Date Tested for Hepatitis B", pmtct.hepatitisBTestResult AS "Hepatitis B Test Result", pmtct.encounterDate2 AS "Date Tested for Hepatitis C", pmtct.hepatitisCTestResult AS "Hepatitis C Test Result", - pmtct.encounterDate3 AS "Date tested for Sypillis", pmtct.syphilisTestResult AS "Syphillis Test Result", pmtct.IfRecencyTestingOptIn AS "If Recency Testing Opt In", - pmtct.recencyID AS "Recency Id", pmtct.recencyTestType AS "Recency Test Type", pmtct.recencyTestDate AS "Recency Test Date (yyyy-mm-dd)", - pmtct.recencyInterpretation AS "Recency Interpretation", pmtct.viralLoadSampleCollectionDate AS "Viral Load Sample Collection Date", pmtct.viralLoadResult AS "Viral Load Result Classification", - pmtct.viralLoadConfirmationResult AS "Viral Load Confirmation Result", pmtct.viralLoadConfirmationDate AS "Viral Load Confirmation Date (yyyy-mm-dd)", pmtct.finalRecencyResult AS "Final Recency Result", - pmtct.hivEnrollment AS "Mother''s ART Start Date" + pmtct-hts-query: select pmtct."State", pmtct."LGA", pmtct."Facility", pmtct."Patient ID", pmtct."ANC Number", pmtct."Mother''s Hospital Num", pmtct."Mother''s Date of Birth", pmtct."Age", pmtct."Marital Status", pmtct."ANC Setting", pmtct."Point of Entry", pmtct."Modality", pmtct."Date of registration in index pregnancy", + pmtct."Gestational Age (Weeks) @ First ANC visit", pmtct."Gravida", pmtct."Parity", pmtct."Date Tested for HIV", pmtct."HIV Test Result", pmtct."Date Tested for Hepatitis B", pmtct."Hepatitis B Test Result",pmtct."Date Tested for Hepatitis C", pmtct."Hepatitis C Test Result", pmtct."Date tested for Syphillis", pmtct."Syphillis Test Result", + pmtct."If Recency Testing Opt In", pmtct."Recency ID", pmtct."Recency Test Type", pmtct."Recency Test Date (yyyy_mm_dd)", pmtct."Recency Interpretation", pmtct."Viral Load Sample Collection Date", pmtct."Viral Load Confirmation Result", pmtct."Viral Load Confirmation Date (yyyyy-mm-dd)", pmtct."Final Recency Result", + pmtct."Date Of Maternal Retesting", pmtct."Maternal Retesting Result", pmtct."Mother''s ART Start Date", pmtct."Previously Known HIV Status", pmtct."Mother''s Unique ID", pmtct."Linked to Syphilis Treatment" from ( SELECT DISTINCT ON (p.uuid)p.uuid AS PersonUuid, - facility_state.name as state, - facility_lga.name as lga, - facility.name as facilityName, - p.hospital_number as hospitalNumber, - anc.anc_no, - COALESCE(he.unique_id, hc.client_code) AS motherCode, - p.date_of_birth as dateOfBirth, - EXTRACT(YEAR from AGE(NOW(), date_of_birth)) as age, - p.marital_status->>'display' as maritalStatus, - p.uuid, - (select display from base_application_codeset where code = hrs.modality ) AS modality, - anc.gaweeks_anc, - hc.test1->>'date' AS hivTestDate, - hc.hiv_test_result, - hc.date_visit AS encounterDate, hc.date_visit AS encounterDate1, hc.date_visit AS encounterDate2, hc.date_visit AS encounterDate3, hc.date_visit AS encounterDate4, - (CASE WHEN hc.hepatitis_testing->>'hepatitisBTestResult' ILIKE 'Yes' THEN 'Positive' ELSE 'Negative' END) AS hepatitisBTestResult, - (CASE WHEN hc.hepatitis_testing->>'hepatitisCTestResult' ILIKE 'Yes' THEN 'Positive' ELSE 'Negative' END) AS hepatitisCTestResult, - (CASE WHEN hc.syphilis_testing->>'syphilisTestResult' ILIKE 'Yes' THEN 'Reactive' ELSE 'Non-Reactive' END) As syphilisTestResult, - (CASE WHEN hc.recency->>'optOutRTRI' ILIKE 'true' THEN 'Yes' WHEN hc.recency->>'optOutRTRI' ILIKE 'false' THEN 'No' WHEN hc.recency->>'optOutRTRI' != NULL THEN hc.recency->>'optOutRTRI' ELSE NULL END) AS IfRecencyTestingOptIn, - hc.recency->>'rencencyId' AS recencyID, hc.recency->>'optOutRTRITestName' AS recencyTestType, - (CASE WHEN hc.recency->>'optOutRTRITestDate' IS NOT NULL AND hc.recency->>'optOutRTRITestDate' != '' AND LENGTH(hc.recency->>'optOutRTRITestDate') > 0 THEN CAST(NULLIF(hc.recency->>'optOutRTRITestDate', '') AS TEXT) WHEN hc.recency->>'sampleTestDate' IS NOT NULL - AND hc.recency->>'sampleTestDate' != '' AND LENGTH(hc.recency->>'sampleTestDate') > 0 THEN CAST(NULLIF(hc.recency->>'sampleTestDate', '') AS TEXT) ELSE NULL END) AS recencyTestDate, - (CASE WHEN hc.recency->>'receivedResultDate' IS NOT NULL AND hc.recency->>'receivedResultDate' != '' AND LENGTH(hc.recency->>'receivedResultDate') > 0 THEN CAST(NULLIF(hc.recency->>'receivedResultDate', '') AS TEXT) ELSE NULL END) AS viralLoadReceivedResultDate, - (CASE WHEN hc.recency->>'rencencyInterpretation' IS NOT NULL AND hc.recency->>'rencencyInterpretation' ILIKE '%Long%' THEN 'RTRI Longterm' - WHEN hc.recency->>'rencencyInterpretation' IS NOT NULL AND hc.recency->>'rencencyInterpretation' ILIKE '%Recent%' THEN 'RTRI Recent' ELSE hc.recency->>'rencencyInterpretation' END) AS recencyInterpretation, - hc.recency->>'finalRecencyResult' AS finalRecencyResult, hc.recency->>'viralLoadResultClassification' AS viralLoadResult, - CAST(NULLIF(hc.recency->>'sampleCollectedDate', '') AS TEXT) AS viralLoadSampleCollectionDate, hc.recency->>'viralLoadConfirmationResult' AS viralLoadConfirmationResult, - CAST(NULLIF(hc.recency->>'viralLoadConfirmationTestDate', '') AS DATE) AS viralLoadConfirmationDate, - hc.date_visit AS encounterDate, - (select display from base_application_codeset where code = hrs.entry_point) AS entryPoint, - CAST(COALESCE(he.date_started, he.date_of_registration) AS TEXT) AS hivEnrollment + facility_state.name as "State", + facility_lga.name as "LGA", + facility.name as "Facility", + p.uuid as "Patient ID", + p.id, + anc.anc_no as "ANC Number", + p.hospital_number as "Mother''s Hospital Num", + p.date_of_birth AS "Mother''s Date of Birth", + EXTRACT(YEAR from AGE(CAST('?3' AS DATE), date_of_birth)) as "Age", + p.marital_status->>'display' as "Marital Status", + anc.anc_setting_anc as "ANC Setting", + anc.first_anc_date, + anc.gaweeks_anc as "Gestational Age (Weeks) @ First ANC visit", + anc.gravida_anc as "Gravida", + anc.parity_anc as "Parity", + delivery.hbstatus_delivery, + anc.tested_syphilis_anc, + anc.test_result_syphilis_anc , + anc.syphillisStatus AS Partner_syphilis_status, + p.date_of_registration as dateOfRegistration, + he.date_started AS hivEnrollmentDate, + anc.acceptHivTest AS Partner_acceptHivTest, + anc.referredTo AS Partner_syphilis_status, + anc.age AS Partner_age, + he.date_of_registration as dateOfRegistrationOnHiv, + he.date_confirmed_hiv, + he.date_started as "Mother''s ART Start Date", + anc.previously_known_hiv_status as "Previously Known HIV Status", + (CASE WHEN hts_client.hepatitisBTestResult IS NOT NULL THEN hts_client.date_created_hts_client ELSE NULL END) as "Date Tested for Hepatitis B", + hts_client.hepatitisBTestResult as "Hepatitis B Test Result", + (CASE WHEN hts_client.hepatitisCTestResult IS NOT NULL THEN hts_client.date_created_hts_client ELSE NULL END) as "Date Tested for Hepatitis C", + hts_client.hepatitisCTestResult as "Hepatitis C Test Result", + anc.hivRestested AS hivRestested, + CAST (anc.max_created_date_anc AS DATE) as "Date tested for Syphillis", + anc.test_result_syphilis_anc AS "Syphillis Test Result", + anc.acceptedHIVTesting AS acceptedHIVTesting, + hts_client.hiv_test_result2_hts_client AS "HIV Test Result", + hts_client.date_created_hts_client AS "Date Tested for HIV", + anc.receivedHivRetestedResult AS receivedHivRetestedResult, + anc.previouslyKnownHIVPositive AS previouslyKnownHIVPositive, + (select display from base_application_codeset where code = hts_rst.entry_point) AS "Point of Entry", + bac.display AS "Modality", + pmtctenroll.pmtct_enrollment_date AS "Date of registration in index pregnancy", + he.unique_id AS "Mother''s Unique ID", + hts_retest.date_visit as "Date Of Maternal Retesting", + hts_retest.hiv_test_result2 as "Maternal Retesting Result", + anc.syphilis_treatment_status as "Linked to Syphilis Treatment", + hts_client.optOutRTRI_status as "If Recency Testing Opt In", + hts_client.rencencyId as "Recency ID", + hts_client.sampleType as "Recency Test Type", + hts_client.rencencyTestDate as "Recency Test Date (yyyy_mm_dd)", + hts_client.rencencyInterpretation as "Recency Interpretation", + pmtctdov.date_of_viral_load as "Viral Load Sample Collection Date", + hts_client.finalRecencyResult as "Final Recency Result", + labResult.result_reported as "Viral Load Confirmation Result", + labResult.date_result_reported as "Viral Load Confirmation Date (yyyyy-mm-dd)" FROM patient_person p - LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid - INNER JOIN hts_client hc ON hc.person_uuid = p.uuid INNER JOIN ( SELECT * FROM (SELECT p.id, CONCAT(CAST(address_object->>'city' AS VARCHAR), ' ', REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(CAST(address_object->>'line' AS text), '\\\\\\\\', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '')) AS address, CASE WHEN address_object->>'stateId' ~ '^\\\\d+(\\\\.\\\\d+)?$' THEN address_object->>'stateId' ELSE null END AS stateId, @@ -187,530 +203,848 @@ query: FROM patient_person p, jsonb_array_elements(p.address-> 'address') with ordinality l(address_object)) as result ) r ON r.id=p.id + LEFT JOIN ( + SELECT person_uuid AS person_uuid_anc, + (select display from base_application_codeset where code = anc_setting) AS anc_setting_anc, + previously_known_hiv_status, + first_anc_date AS first_anc_date, + gaweeks AS gaweeks_anc, + gravida AS gravida_anc, + parity As parity_anc, + tested_syphilis AS tested_syphilis_anc, + test_result_syphilis AS test_result_syphilis_anc, + CASE + WHEN treated_syphilis = 'Yes' THEN 'Treated' + WHEN referred_syphilis_treatment = 'Yes' THEN 'Referred for Treatment' + ELSE 'No treatment' + END as syphilis_treatment_status, + partner_information->>'age' AS age, + partner_information->>'syphillisStatus' AS syphillisStatus, + partner_information->>'acceptHivTest' AS acceptHivTest, + partner_information->>'referredTo' AS referredTo, + pmtct_hts_info->>'hivRestested' AS hivRestested, + pmtct_hts_info->>'hivTestResult' AS hivTestResult, + pmtct_hts_info->>'acceptedHIVTesting' AS acceptedHIVTesting, + pmtct_hts_info->>'dateTestedHivPositive' AS dateTestedHivPositive, + pmtct_hts_info->>'receivedHivRetestedResult' AS receivedHivRetestedResult, + pmtct_hts_info->>'previouslyKnownHIVPositive' AS previouslyKnownHIVPositive, + anc_no AS anc_no, + static_hiv_status, + MAX(created_date) AS max_created_date_anc + FROM pmtct_anc + GROUP BY person_uuid, anc_setting, first_anc_date, gaweeks, gravida, parity, tested_syphilis, test_result_syphilis, partner_information, anc_no, static_hiv_status, + pmtct_hts_info,syphilis_treatment_status,previously_known_hiv_status + ) AS anc ON p.uuid = anc.person_uuid_anc + LEFT JOIN ( + SELECT person_uuid AS person_uuid_delivery, + hbstatus AS hbstatus_delivery, + MAX(created_date) AS max_created_date_delivery + FROM pmtct_delivery + GROUP BY person_uuid, hbstatus + ) AS delivery ON p.uuid = delivery.person_uuid_delivery + LEFT JOIN pmtct_delivery panc ON p.uuid = panc.person_uuid AND panc.created_date = delivery.max_created_date_delivery LEFT JOIN base_organisation_unit facility ON facility.id=p.facility_id - LEFT JOIN hts_risk_stratification hrs ON hrs.code = hc.risk_stratification_code - LEFT JOIN base_application_codeset tg ON tg.code = hc.target_group - LEFT JOIN base_application_codeset it ON it.id = hc.relation_with_index_client - LEFT JOIN base_application_codeset rf ON rf.id = hc.referred_from - LEFT JOIN base_application_codeset ts ON ts.code = hc.testing_setting - LEFT JOIN base_application_codeset tc ON tc.id = hc.type_counseling - LEFT JOIN base_application_codeset preg ON preg.id = hc.pregnant - LEFT JOIN base_application_codeset modality_code ON modality_code.code = hrs.modality LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id LEFT JOIN base_organisation_unit res_state ON res_state.id=CAST(r.stateid AS BIGINT) LEFT JOIN base_organisation_unit res_lga ON res_lga.id=CAST(r.lgaid AS BIGINT) LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=p.facility_id AND boui.name='DATIM_ID' LEFT JOIN ( - SELECT person_uuid AS person_uuid_anc, - anc_setting AS anc_setting_anc, - gaweeks AS gaweeks_anc, - anc_no AS anc_no, - static_hiv_status, - MAX(created_date) AS max_created_date_anc - FROM pmtct_anc - GROUP BY person_uuid, anc_setting, first_anc_date, gaweeks, gravida, parity, tested_syphilis, test_result_syphilis, partner_information, anc_no, static_hiv_status, - pmtct_hts_info - ) AS anc ON p.uuid = anc.person_uuid_anc - LEFT JOIN pmtct_enrollment pmtctenroll ON pmtctenroll.person_uuid = p.uuid - WHERE p.archived=0 and p.sex='Female' AND hrs.testing_setting IN ('TEST_SETTING_OTHERS', 'TEST_SETTING_CPMTCT', 'TEST_SETTING_STANDALONE_HTS') AND hrs.modality IN ('TEST_SETTING_STANDALONE_HTS_POST_ANC1_PREGNANT_L&D','TEST_SETTING_STANDALONE_HTS_POST_ANC1_BREASTFEEDING','TEST_SETTING_STANDALONE_HTS_PMTCT_(ANC1_ONLY)','TEST_SETTING_OTHERS_PMTCT_(ANC1_ONLY)','TEST_SETTING_OTHERS_POST_ANC1_BREASTFEEDING','TEST_SETTING_OTHERS_POST_ANC1_PREGNANT_L&D', 'TEST_SETTING_CPMTCT_CONGREGATIONAL_SETTING','TEST_SETTING_CPMTCT_DELIVERY_HOMES', 'TEST_SETTING_CPMTCT_SPOKE_HEALTH_FACILITY', 'TEST_SETTING_CPMTCT_TBA_ORTHODX', 'TEST_SETTING_CPMTCT_TBA_RT-HCW') - AND p.facility_id='?1' AND hc.date_visit BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + SELECT person_uuid, date_visit, (CASE WHEN (hiv_test_result2 IS NULL OR hiv_test_result2 = '') THEN hiv_test_result ELSE hiv_test_result2 END) as hiv_test_result2, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY date_visit DESC) AS rowNums + FROM hts_client + WHERE testing_setting IN ('TEST_SETTING_STANDALONE_HTS', 'TEST_SETTING_OTHERS') + AND date_visit BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) as hts_retest ON p.uuid = hts_retest.person_uuid AND rowNums > 1 + LEFT JOIN ( + SELECT person_uuid as person_uuid_hts_client, + (CASE WHEN (hiv_test_result2 IS NULL OR hiv_test_result2 = '') THEN hiv_test_result ELSE hiv_test_result2 END) as hiv_test_result2_hts_client, + risk_stratification_code as risk_stratification_code_hts_client, + (CASE WHEN hepatitis_testing->>'hepatitisBTestResult' = 'Yes' THEN 'Positive' WHEN hepatitis_testing->>'hepatitisBTestResult' = 'No' THEN 'Negative' ELSE hepatitis_testing->>'hepatitisBTestResult' END) AS hepatitisBTestResult, + (CASE WHEN hepatitis_testing->>'hepatitisCTestResult' = 'Yes' THEN 'Positive' WHEN hepatitis_testing->>'hepatitisCTestResult' = 'No' THEN 'Negative' ELSE hepatitis_testing->>'hepatitisCTestResult' END) AS hepatitisCTestResult, + recency->>'optOutRTRI' AS optOutRTRI, + CASE + WHEN recency->>'optOutRTRI' = 'false' THEN 'No' + WHEN recency->>'optOutRTRI' = 'true' THEN 'Yes' + ELSE recency->>'optOutRTRI' + END AS optOutRTRI_status, + recency->>'rencencyId' AS rencencyId, + recency->>'sampleType' AS sampleType, + recency->>'optOutRTRITestDate' AS rencencyTestDate, + recency->>'rencencyInterpretation' AS rencencyInterpretation, + recency->>'finalRecencyResult' AS finalRecencyResult, + (CASE WHEN (hiv_test_result2 IS NOT NULL OR hiv_test_result2 != '') THEN + date_visit ELSE NULL END) as date_created_hts_client, + MAX(date_visit) AS max_date_created_hts_client, + date_visit + FROM hts_client + WHERE archived = 0 + GROUP BY person_uuid, date_visit, hiv_test_result, hiv_test_result2,risk_stratification_code,hepatitis_testing,date_created,recency,optOutRTRI + ) as hts_client ON p.uuid = hts_client.person_uuid_hts_client + LEFT JOIN + public.hts_risk_stratification hts_rst + ON hts_client.risk_stratification_code_hts_client = hts_rst.code + LEFT JOIN + public.base_application_codeset bac + ON hts_rst.modality = bac.code + LEFT JOIN + public.pmtct_enrollment pmtctenroll + ON hts_client.person_uuid_hts_client = pmtctenroll.person_uuid + LEFT JOIN + public.pmtct_mother_visitation pmtctdov + ON hts_client.person_uuid_hts_client = pmtctdov.person_uuid + LEFT JOIN + public.laboratory_order labOrder + ON p.uuid = labOrder.patient_uuid + LEFT JOIN + public.laboratory_test labTest + ON labOrder.id = labTest.lab_order_id + LEFT JOIN + public.laboratory_result labResult + ON labResult.test_id = labTest.id + LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid + WHERE p.archived=0 and p.sex='Female' AND hts_rst.testing_setting IN ('TEST_SETTING_OTHERS', 'TEST_SETTING_CPMTCT', 'TEST_SETTING_STANDALONE_HTS') AND hts_rst.modality IN ('TEST_SETTING_STANDALONE_HTS_POST_ANC1_PREGNANT_L&D','TEST_SETTING_STANDALONE_HTS_POST_ANC1_BREASTFEEDING','TEST_SETTING_STANDALONE_HTS_PMTCT_(ANC1_ONLY)','TEST_SETTING_OTHERS_PMTCT_(ANC1_ONLY)','TEST_SETTING_OTHERS_POST_ANC1_BREASTFEEDING','TEST_SETTING_OTHERS_POST_ANC1_PREGNANT_L&D', 'TEST_SETTING_CPMTCT_CONGREGATIONAL_SETTING','TEST_SETTING_CPMTCT_DELIVERY_HOMES', 'TEST_SETTING_CPMTCT_SPOKE_HEALTH_FACILITY', 'TEST_SETTING_CPMTCT_TBA_ORTHODX', 'TEST_SETTING_CPMTCT_TBA_RT-HCW') AND p.facility_id=?1 + AND hts_client.date_visit BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) ) as pmtct pmtct-maternal-cohort-query-name: pmtct-maternal-cohort - pmtct-maternal-cohort-query: Select infant.state AS "State", infant.LGA AS "LGA", infant.Facility AS "Facility", - infant.Personuuid AS "Patient ID", infant.Mothers_Hospital_Number AS "Mother''s Hospital Num", - infant.Mothers_Date_of_Birth AS "Mother''s Date of Birth", - infant.maritalstatus AS "Marital Status", infant.anc_setting_anc AS "ANC Setting ( Facility,Community)", - infant.Date_of_Index_ANC_Registration AS "Date of Index ANC Registration", - infant.LMP_Date AS "LMP Date", infant.Gestational_Age_Weeks_at_First_ANC_visit AS "Gestational Age (Weeks) @ First ANC visit", - infant.gravida AS "Gravida", infant.parity AS "Parity", infant.entry_point AS "Point of entry", - infant.hbstatus_delivery AS "Hepatitis B Test Result",infant.test_result_syphilis_anc AS "Syphillis Test Result", - infant.Mother_dateConfirmedHivTest AS "Date tested for HIV", infant.hivstatus AS "HIV Test result", - infant.art_start_time AS "Timing of ART initiation in mother", - infant.art_start_date AS "Mother''s ART Start Date", infant.date_of_viral_load AS "Date of last Valid VL(If any)", - infant.ga_of_viral_Load AS "GA at last visit??? (days)", infant.dateOfCurrentViralLoad, - infant.currentViralLoad, infant.viralloadindication AS "VL Indication for last valid VL before 32 weeks GA", - infant.expected_delivery_date AS "Expected Date of Delivery", infant.date_of_delivery AS "Date of Delivery (mm-dd-yyyy)", - infant.infant_hospital_number AS "Child''s hospital ID number", infant.place_of_delivery AS "Place of Delivery", - infant.mode_of_delivery AS "Mode of delivery", infant.child_status AS "Fetal outcome (Child status)", Infant.sex AS "Sex - Child", - infant.body_weight AS "Birth Weight", - infant.feeding_decision AS "Infant feeding Options", - infant.test_type, infant.date_sample_collected, infant.date_sample_sent, infant.date_result_received_at_facility, - infant.results, infant.infant_outcome_at18_months AS "Result (Child Final Outcome)" - from (SELECT DISTINCT ON (pia.infant_hospital_number) p.uuid AS PersonUuid, p.id, p.uuid,p.hospital_number as Mothers_Hospital_Number, - INITCAP(p.surname) AS surname, INITCAP(p.first_name) as firstName, he.date_started AS hivEnrollmentDate, - EXTRACT(YEAR from AGE(NOW(), date_of_birth)) as Mother_age, - p.other_name as otherName, p.sex as sex, p.date_of_birth as Mothers_Date_of_Birth, - p.date_of_registration as dateOfRegistration, p.marital_status->>'display' as maritalStatus, - education->>'display' as education, p.employment_status->>'display' as occupation, - facility.name as Facility, facility_lga.name as LGA, facility_state.name as state, - boui.code as datimId, - pmtctenroll.lmp AS LMP_Date, - bacEntry.display AS entry_point, - person_uuid_anc, - anc.max_created_date_anc, - bacc.display AS anc_setting_anc, - anc.Date_of_Index_ANC_Registration, - anc.Gestational_Age_Weeks_at_First_ANC_visit, - anc.gravida, - anc.parity, - anc.tested_syphilis_anc, - anc.test_result_syphilis_anc, - anc.syphillisStatus AS Partner_syphilis_status, - anc.acceptHivTest AS Partner_acceptHivTest, - anc.referredTo AS Partner_syphilis_status, - anc.age AS Partner_age, - delivery.hbstatus_delivery, - delivery.hcstatus_delivery, - delivery.date_of_delivery, - bacModeOfDelivery.display AS mode_of_delivery, - delivery.maternal_outcome, - bacChildStatus.display AS child_status, - delivery.number_of_infants_alive, - delivery.number_of_infants_dead, - delivery.delivery_time, - bacFeedingOption.display AS feeding_decision, - delivery.child_given_arv_with72, - delivery.hiv_exposed_infant_given_hb_with24hrs, - VlResult.dateOfCurrentViralLoad, - VlResult.currentViralLoad, - VlResult.viralLoadIndication, - mother_visitation.ga_of_viral_load, - mother_visitation.date_of_viral_load, - pii.hospital_number, - pii.infant_sex, - pii.body_weight, - piv.ctx_status, - pip.age_at_test, - pip.test_type, - pip.date_sample_collected, - pip.date_sample_sent, - pip.date_result_received_at_facility, - pip.date_result_received_by_caregiver, - bacResult.display AS results, - pii.infant_outcome_at18_months, - anc.Mother_dateConfirmedHivTest AS Mother_dateConfirmedHivTest, - anc.hivstatus AS hivstatus, - bac.display AS art_start_time, - pmtctenroll.art_start_date, - anc.expected_delivery_date, - pia.infant_hospital_number, - bacDelivery.display AS place_of_delivery - FROM patient_person p - INNER JOIN ( - SELECT * FROM (SELECT p.id, REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(CAST(address_object->>'line' AS text), '"', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '') AS address, - CASE WHEN address_object->>'stateId' ~ '^\\\\d+(\\\\.\\\\d+)?$' THEN address_object->>'stateId' ELSE null END AS stateId, - CASE WHEN address_object->>'district' ~ '^\\\\d+(\\\\.\\\\d+)?$' THEN address_object->>'district' ELSE null END AS lgaId - FROM patient_person p, - jsonb_array_elements(p.address-> 'address') with ordinality l(address_object)) as result - ) r ON r.id=p.id - LEFT JOIN ( - SELECT mother_person_uuid AS mother_person_uuid, - body_weight AS body_weight, - hospital_number AS hospital_number, - sex AS infant_sex, - infant_outcome_at18_months AS infant_outcome_at18_months, - MAX(created_date) AS max_created_date_pii - FROM pmtct_infant_information - GROUP BY mother_person_uuid, body_weight, hospital_number, infant_sex, infant_outcome_at18_months - ) AS pii ON p.uuid = pii.mother_person_uuid - LEFT JOIN ( - SELECT mother_person_uuid AS mother_person_uuid, - ctx_status AS ctx_status, - MAX(visit_date) AS max_created_date_piv - FROM pmtct_infant_visit - GROUP BY mother_person_uuid, ctx_status - ) AS piv ON p.uuid = piv.mother_person_uuid - LEFT JOIN ( - SELECT uuid AS uuid, - infant_hospital_number AS infant_hospital_number, - MAX(visit_date) AS max_created_date_piv - FROM pmtct_infant_arv - GROUP BY uuid, infant_hospital_number - ) AS pia ON p.uuid = pia.uuid - LEFT JOIN ( - SELECT uuid AS uuid, - test_type AS test_type, - age_at_test AS age_at_test, - date_sample_collected AS date_sample_collected, - date_sample_sent AS date_sample_sent, - date_result_received_at_facility AS date_result_received_at_facility, - date_result_received_by_caregiver AS date_result_received_by_caregiver, - results AS results, - MAX(visit_date) AS max_created_date_pip - FROM pmtct_infant_pcr - GROUP BY uuid, test_type, age_at_test, date_sample_collected, date_sample_sent, date_result_received_at_facility, date_result_received_by_caregiver, results - ) AS pip ON p.uuid = pip.uuid - LEFT JOIN ( - SELECT person_uuid AS person_uuid_anc, - anc_setting AS anc_setting_anc, - first_anc_date AS Date_of_Index_ANC_Registration, - gaweeks AS Gestational_Age_Weeks_at_First_ANC_visit, - gravida AS gravida, - parity As parity, - tested_syphilis AS tested_syphilis_anc, - test_result_syphilis AS test_result_syphilis_anc, - partner_information->>'age' AS age, - partner_information->>'syphillisStatus' AS syphillisStatus, - partner_information->>'acceptHivTest' AS acceptHivTest, - partner_information->>'referredTo' AS referredTo, - partner_information->>'hivStatus' AS hivStatus, - partner_information->>'dateConfirmedHivTest' AS Mother_dateConfirmedHivTest, - expected_delivery_date AS expected_delivery_date, - MAX(created_date) AS max_created_date_anc - FROM pmtct_anc - GROUP BY person_uuid, anc_setting, first_anc_date, gaweeks, gravida, parity, tested_syphilis, test_result_syphilis, partner_information,hivStatus, - Mother_dateConfirmedHivTest, hivstatus, expected_delivery_date - ) AS anc ON p.uuid = anc.person_uuid_anc - LEFT JOIN ( - SELECT person_uuid AS person_uuid_mother_visitation, - ga_of_viral_load AS ga_of_viral_Load, - date_of_viral_load AS date_of_viral_load, - MAX(date_of_visit) AS max_created_date_mother_visitation - FROM pmtct_mother_visitation - GROUP BY person_uuid, ga_of_viral_load, date_of_viral_load - ) AS mother_visitation ON p.uuid = mother_visitation.person_uuid_mother_visitation - LEFT JOIN ( - SELECT person_uuid AS person_uuid_delivery, - hbstatus AS hbstatus_delivery, - hcstatus AS hcstatus_delivery, - date_of_delivery AS date_of_delivery, - mode_of_delivery AS mode_of_delivery, - maternal_outcome AS maternal_outcome, - child_status AS child_status, - number_of_infants_alive AS number_of_infants_alive, - number_of_infants_dead AS number_of_infants_dead, - delivery_time AS delivery_time, - feeding_decision AS feeding_decision, - child_given_arv_within72 AS child_given_arv_with72, - hiv_exposed_infant_given_hb_within24hrs AS hiv_exposed_infant_given_hb_with24hrs, - place_of_delivery AS place_of_delivery, - MAX(created_date) AS max_created_date_delivery - FROM pmtct_delivery - GROUP BY person_uuid, hbstatus, hcstatus, date_of_delivery, mode_of_delivery, maternal_outcome, child_status, number_of_infants_alive, number_of_infants_dead, delivery_time, feeding_decision, child_given_arv_with72, hiv_exposed_infant_given_hb_with24hrs, - place_of_delivery - ) AS delivery ON p.uuid = delivery.person_uuid_delivery - LEFT JOIN pmtct_delivery panc ON p.uuid = panc.person_uuid AND panc.created_date = delivery.max_created_date_delivery - LEFT JOIN base_organisation_unit facility ON facility.id=p.facility_id - LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id - LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id - LEFT JOIN base_organisation_unit res_state ON res_state.id=CAST(r.stateid AS BIGINT) - LEFT JOIN base_organisation_unit res_lga ON res_lga.id=CAST(r.lgaid AS BIGINT) - LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=p.facility_id AND boui.name='DATIM_ID' - INNER JOIN pmtct_enrollment pmtctenroll ON pmtctenroll.person_uuid = p.uuid - LEFT JOIN base_application_codeset bac ON bac.code = pmtctenroll.art_start_time - LEFT JOIN base_application_codeset bacc ON bacc.code = anc.anc_setting_anc - LEFT JOIN base_application_codeset bacEntry ON bacEntry.code = pmtctenroll.entry_point - LEFT JOIN base_application_codeset bacDelivery ON bacDelivery.code = delivery.place_of_delivery - LEFT JOIN base_application_codeset bacModeOfDelivery ON bacModeOfDelivery.code = delivery.mode_of_delivery - LEFT JOIN base_application_codeset bacFeedingOption ON bacFeedingOption.code = delivery.feeding_decision - LEFT JOIN base_application_codeset bacResult ON bacResult.code = pip.results - LEFT JOIN base_application_codeset bacChildStatus ON bacChildStatus.code = delivery.child_status - LEFT JOIN (SELECT * FROM - (SELECT CAST(ls.date_sample_collected AS DATE ) AS dateOfCurrentViralLoadSample, - sm.patient_uuid AS person_uuid130 , - sm.facility_id AS vlFacility, - sm.archived AS vlArchived, - acode.display AS viralLoadIndication, - sm.result_reported AS currentViralLoad, - CAST(sm.date_result_reported AS DATE) AS dateOfCurrentViralLoad, - ROW_NUMBER () OVER (PARTITION BY sm.patient_uuid ORDER BY date_result_reported DESC) AS rank2 - FROM public.laboratory_result sm - INNER JOIN public.laboratory_test lt on sm.test_id = lt.id - INNER JOIN public.laboratory_sample ls on ls.test_id = lt.id - INNER JOIN public.base_application_codeset acode on acode.id = lt.viral_load_indication - WHERE lt.lab_test_id = 16 - AND lt.viral_load_indication !=719 - AND sm. date_result_reported IS NOT NULL - AND sm.date_result_reported <= CAST(NOW() AS DATE) - AND sm.result_reported IS NOT NULL - ) AS vl_result - WHERE vl_result.rank2 = 1 - AND (vl_result.vlArchived = 0 OR vl_result.vlArchived IS null) - ) AS VlResult ON p.uuid = VlResult.person_uuid130 - LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid - WHERE p.archived=0 and p.sex='Female' - AND p.facility_id=%d AND p.date_of_registration - BETWEEN CAST('%s' AS DATE) AND CAST('%s' AS DATE) - )as infant + pmtct-maternal-cohort-query: with target_pharmacies as (select * from hiv_art_pharmacy where person_uuid in (select distinct person_uuid from pmtct_mother_visitation)), + target_statuses as (select * from hiv_status_tracker where person_id in (select distinct person_uuid from pmtct_mother_visitation)), + art_status as ( + ( SELECT DISTINCT ON (pharmacy.person_uuid) pharmacy.person_uuid AS cuPersonUuid, + ( + CASE + WHEN stat.hiv_status ILIKE '%DEATH%' OR stat.hiv_status ILIKE '%Died%' THEN 'Died' + WHEN( stat.status_date > pharmacy.maxdate AND (stat.hiv_status ILIKE '%stop%' OR stat.hiv_status ILIKE '%out%' OR stat.hiv_status ILIKE '%Invalid %')) + THEN stat.hiv_status + ELSE pharmacy.status + END + ) AS status + FROM + ( + SELECT + ( + CASE + WHEN hp.visit_date + hp.refill_period + INTERVAL '29 day' < CAST('?3' AS DATE) THEN 'IIT' + ELSE 'Active' + END + ) status, + ( + CASE + WHEN hp.visit_date + hp.refill_period + INTERVAL '29 day' < CAST('?3' AS DATE) THEN hp.visit_date + hp.refill_period + INTERVAL '29 day' + ELSE hp.visit_date + END + ) AS visit_date, + hp.person_uuid, MAXDATE + FROM + target_pharmacies hp + INNER JOIN ( + SELECT hap.person_uuid, hap.visit_date AS MAXDATE, ROW_NUMBER() OVER (PARTITION BY hap.person_uuid ORDER BY hap.visit_date DESC) as rnkkk3 + FROM target_pharmacies hap + INNER JOIN hiv_enrollment h ON h.person_uuid = hap.person_uuid AND h.archived = 0 + inner join jsonb_array_elements(hap.extra->'regimens') as ex(data) on true + INNER JOIN public.hiv_regimen r on r.description = ex.data->>'name' and r.active=true + INNER JOIN public.hiv_regimen_type rt on rt.id = r.regimen_type_id + WHERE r.regimen_type_id in (1,2,3,4,14) + AND hap.archived = 0 + AND hap.visit_date < CAST('?3' AS DATE) + ) MAX ON MAX.MAXDATE = hp.visit_date AND MAX.person_uuid = hp.person_uuid + AND MAX.rnkkk3 = 1 WHERE + hp.archived = 0 + AND hp.visit_date < CAST('?3' AS DATE) + ) pharmacy + LEFT JOIN ( + SELECT + hst.hiv_status, + hst.person_id, + hst.cause_of_death, hst.va_cause_of_death, + hst.status_date + FROM + ( + SELECT * FROM (SELECT DISTINCT (person_id) person_id, status_date, cause_of_death, va_cause_of_death, + hiv_status, ROW_NUMBER() OVER (PARTITION BY person_id ORDER BY status_date DESC) + FROM target_statuses WHERE archived=0 AND status_date <= CAST('?3' AS DATE) )s + WHERE s.row_number=1 + ) hst + INNER JOIN hiv_enrollment he ON he.person_uuid = hst.person_id + WHERE hst.status_date < CAST('?3' AS DATE) + ) stat ON stat.person_id = pharmacy.person_uuid + ) + ),cvl as ( + SELECT * FROM ( + SELECT CAST(ls.date_sample_collected AS DATE ) AS dateOfCurrentViralLoadSample, sm.patient_uuid as person_uuid130 , sm.facility_id as vlFacility, sm.archived as vlArchived, acode.display as viralLoadIndication, sm.result_reported as currentViralLoad,CAST(sm.date_result_reported AS DATE) as dateOfCurrentViralLoad, + ROW_NUMBER () OVER (PARTITION BY sm.patient_uuid ORDER BY date_result_reported DESC) as rank2 + FROM public.laboratory_result sm + INNER JOIN public.laboratory_test lt on sm.test_id = lt.id + INNER JOIN public.laboratory_sample ls on ls.test_id = lt.id + INNER JOIN public.base_application_codeset acode on acode.id = lt.viral_load_indication + WHERE lt.lab_test_id = 16 + AND lt.viral_load_indication !=719 + AND sm. date_result_reported IS NOT NULL + + AND sm.result_reported is NOT NULL + )as vl_result + WHERE vl_result.rank2 = 1 + AND (vl_result.vlArchived = 0 OR vl_result.vlArchived is null) + ) + select pmtct."State", pmtct."LGA", pmtct."Facility", pmtct."Patient ID", pmtct."Mother''s Hospital Number", pmtct."Mother''s Unique ID",pmtct."Mother''s Date of Birth", pmtct."Age", pmtct."Marital Status", pmtct."ANC Setting", + pmtct."Modality",pmtct."Point of Entry", pmtct."Date of First Visit", pmtct."Date of Index ANC Registration", pmtct."LMP Date", pmtct."Gestational Age (Weeks) @ First ANC visit", pmtct."Gravida", pmtct."Parity", pmtct."PCV @ANC registration", pmtct."Hepatitis B Test Result", + pmtct."Treated for Hepatitis B", pmtct."Syphilis Test Result",pmtct."Treated for Syphilis", pmtct."TB screening Status",pmtct."Date tested for HIV",pmtct."Type of HIV test",pmtct."Mother''s ART Start Date",pmtct."Timing of ART initiation in mother",pmtct. "Current Pregnancy Status", + pmtct."GA at last visit (weeks)",pmtct."Mother''s Current ART Status",pmtct."Visit Status",pmtct."Mother''s DSD Status",pmtct."Due Date for VL Sample collection @ 32 weeks",pmtct."Date for VL sample collection @ 32 weeks", + pmtct."VL result at 32-36 weeks GA", pmtct."Date of VL result at 32-36 weeks GA", pmtct."Current Viral load Result",pmtct."Date of Current VL",pmtct."Date of Delivery",pmtct."Place of Delivery",pmtct."Mode of Delivery" ,pmtct."Fetal outcome (Child status)",pmtct."Child''s hospital ID number", + pmtct."Sex - Child",pmtct."Birth Weight",pmtct."Date of ARV Prophylaxis Commencemment",pmtct."Type of Prophylaxis (ePNP or regular)",/*pmtct.age_at_ctx,*/pmtct."Date of CTX (Cotrimoxazole)",pmtct."Current infant feeding options", + pmtct."Date of First DNA PCR Sample collection",pmtct."Result of first DNA PCR test", pmtct."Date first DNA PCR result was received",pmtct."Date of Second DNA PCR test sample collection",pmtct."Result of second DNA PCR test",pmtct."Date second DNA PCR result was received",pmtct."Date of third DNA PCR test sample collection",pmtct."Result of third DNA PCR test",pmtct."Date third DNA PCR result was received",pmtct."Date of fourth DNA PCR test sample collection",pmtct."Result of fourth DNA PCR test",pmtct."Date fourth DNA PCR result was received", + pmtct."Date of confirmatory DNA PCR test sample collection",pmtct."Result of confirmatory DNA PCR test",pmtct."Date confirmatory DNA PCR result was received", + pmtct."Date of Child Final Outcome test",pmtct."Result (Child Final Outcome)",pmtct."Child''s ART Start Date",pmtct."Child Unique ID" + from ( + SELECT DISTINCT pii.hospital_number, p.uuid AS PersonUuid, + facility_state.name as "State", + facility_lga.name as "LGA", + facility.name as "Facility", + p.uuid as "Patient ID", + p.hospital_number as "Mother''s Hospital Number", + he.unique_id as "Mother''s Unique ID", + p.date_of_birth as "Mother''s Date of Birth", + EXTRACT(YEAR from AGE(CAST('?3' AS DATE), date_of_birth)) as "Age", + p.marital_status->>'display' as "Marital Status", + anc.anc_setting_anc as "ANC Setting", + (select display from base_application_codeset where code = anc.anc_setting_anc) as "Modality", + (select display from base_application_codeset where code = pmtctenroll.entry_point) as "Point of Entry", firstVisitDate.dateOfVisit AS "Date of First Visit", + anc.first_anc_date as "Date of Index ANC Registration", + (case when anc.anc_no is not null then anc.lmp else pmtctenroll.lmp end) AS "LMP Date", + anc.gaweeks_anc as "Gestational Age (Weeks) @ First ANC visit", + (case when anc.anc_no is not null then anc.gravida_anc else pmtctenroll.gravida end) as "Gravida", + anc.parity_anc as "Parity", + '' as "PCV @ANC registration", + pmtctenroll.hepatitisb as "Hepatitis B Test Result", + anc.test_result_syphilis_anc as "Syphilis Test Result", + anc.treatedHepatitisB as "Treated for Hepatitis B", + anc.treated_syphilis as "Treated for Syphilis", + (select display from base_application_codeset where code = pmtctenroll.tb_status) as "TB screening Status", + hts_retest.date_visit as "Date tested for HIV", + (CASE WHEN hts_retest.rowNums > 1 THEN 'Retesting' WHEN hts_retest.rowNums <= 1 THEN 'First test' END ) as "Type of HIV test", + pmtctenroll.art_start_date as "Mother''s ART Start Date", + (select display from base_application_codeset where code = pmtctenroll.art_start_time) as "Timing of ART initiation in mother", + hc.pregnancy_status as "Current Pregnancy Status", + pmv.ga_of_viral_load as "GA at last visit (weeks)", + ast.status as "Mother''s Current ART Status", + (select display from base_application_codeset where code = pmv.visit_status) as "Visit Status", + (select display from base_application_codeset where code = pmv.dsd_option) as "Mother''s DSD Status", + CAST(anc.lmp + interval '32 weeks'AS DATE) as "Due Date for VL Sample collection @ 32 weeks", + gaViral.date_of_viral_load as "Date for VL sample collection @ 32 weeks", + gaViral.ga_of_viral_load as "VL result at 32-36 weeks GA", + gaViral.result_of_viral_load as "Date of VL result at 32-36 weeks GA", + cvl.currentviralload as "Current Viral load Result", + cvl.dateofcurrentviralload as "Date of Current VL", + delivery.date_of_delivery as "Date of Delivery", + (select display from base_application_codeset where code = delivery.place_of_delivery) as "Place of Delivery", + (select display from base_application_codeset where code = delivery.mode_of_delivery) as "Mode of Delivery", + (select display from base_application_codeset where code = delivery.child_status) as "Fetal outcome (Child status)", + pii.hospital_number as "Child''s hospital ID number", + (select display from base_application_codeset where code = pii.sex) as "Sex - Child", + pii.body_weight as "Birth Weight", + pia.infant_arv_time as "Date of ARV Prophylaxis Commencemment", + (select display from base_application_codeset where code = pia.infant_arv_type) as "Type of Prophylaxis (ePNP or regular)", + (select display from base_application_codeset where code = pia.age_at_ctx) as "Date of CTX (Cotrimoxazole)", + (select display from base_application_codeset where code = delivery.feeding_decision) as "Current infant feeding options", + first.date_sample_collected as "Date of First DNA PCR Sample collection", + (select display from base_application_codeset where code = first.results) as "Result of first DNA PCR test", + first.date_result_received_at_facility as "Date first DNA PCR result was received", + first.date_sample_collected as "Date of first DNA PCR test sample collection", + second.date_sample_collected as "Date of Second DNA PCR test sample collection", + (select display from base_application_codeset where code = second.results) as "Result of second DNA PCR test", + second.date_result_received_at_facility as "Date second DNA PCR result was received", + third.date_sample_collected as "Date of third DNA PCR test sample collection", + (select display from base_application_codeset where code = third.results) as "Result of third DNA PCR test", + third.date_result_received_at_facility as "Date third DNA PCR result was received", + fourth.date_sample_collected as "Date of fourth DNA PCR test sample collection", + (select display from base_application_codeset where code = fourth.results) as "Result of fourth DNA PCR test", + fourth.date_result_received_at_facility as "Date fourth DNA PCR result was received", + confirm.date_sample_collected as "Date of confirmatory DNA PCR test sample collection", + (select display from base_application_codeset where code = confirm.results) as "Result of confirmatory DNA PCR test", + confirm.date_result_received_at_facility as "Date confirmatory DNA PCR result was received", + '' as "Sample collection date for Confirmatory DBS (if DBS positive)", + '' as "Result of Confirmatory DBS", + '' as "Date of Child Final Outcome test", + '' as "Result (Child Final Outcome)", + '' as "Child''s ART Start Date", + '' as "Child Unique ID" + FROM patient_person p + LEFT join hiv_enrollment he on he.person_uuid = p.uuid + LEFT JOIN (SELECT * FROM ( + SELECT person_uuid personUuid, date_of_visit dateOfVisit, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY date_of_visit ASC) AS rowNums + FROM pmtct_mother_visitation WHERE date_of_visit BETWEEN '?2' AND '?3' + ) subQ WHERE rowNums = 1)firstVisitDate ON firstVisitDate.personUuid = p.uuid + left JOIN (select distinct on (person_uuid) person_uuid,date_of_observation,data from hiv_observation order by 1,2 desc ) as ho + on ho.person_uuid = p.uuid + left JOIN (select distinct on (person_uuid) person_uuid,visit_date,pregnancy_status from hiv_art_clinical order by 1,2 desc ) as hc + on hc.person_uuid = p.uuid + INNER JOIN ( + SELECT * FROM (SELECT p.id, CONCAT(CAST(address_object->>'city' AS VARCHAR), ' ', REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(CAST(address_object->>'line' AS text), '\\\\\\\\', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '')) AS address, + CASE WHEN address_object->>'stateId' ~ '^\\\\d+(\\\\.\\\\d+)?$' THEN address_object->>'stateId' ELSE null END AS stateId, + CASE WHEN address_object->>'district' ~ '^\\\\d+(\\\\.\\\\d+)?$' THEN address_object->>'district' ELSE null END AS lgaId + FROM patient_person p, + jsonb_array_elements(p.address-> 'address') with ordinality l(address_object)) as result + ) r ON r.id=p.id + LEFT JOIN ( + SELECT person_uuid AS person_uuid_anc, + (CASE WHEN community_setting = 'PMTCT (ANC1 Only)' THEN 'PMTCT (ANC1 Only)' ELSE (select display from base_application_codeset where code = community_setting) END) AS anc_setting_anc, + first_anc_date AS first_anc_date, + lmp, + gaweeks AS gaweeks_anc, + gravida AS gravida_anc, + parity As parity_anc, + tested_syphilis AS tested_syphilis_anc, + test_result_syphilis AS test_result_syphilis_anc, + treated_syphilis, + partner_information->>'age' AS age, + partner_information->>'syphillisStatus' AS syphillisStatus, + partner_information->>'acceptHivTest' AS acceptHivTest, + partner_information->>'referredTo' AS referredTo, + pmtct_hts_info->>'hivRestested' AS hivRestested, + pmtct_hts_info->>'hivTestResult' AS hivTestResult, + pmtct_hts_info->>'acceptedHIVTesting' AS acceptedHIVTesting, + pmtct_hts_info->>'dateTestedHivPositive' AS dateTestedHivPositive, + pmtct_hts_info->>'receivedHivRetestedResult' AS receivedHivRetestedResult, + pmtct_hts_info->>'previouslyKnownHIVPositive' AS previouslyKnownHIVPositive, + anc_no AS anc_no, treated_hepatitisb AS treatedHepatitisB, + static_hiv_status + FROM pmtct_anc + WHERE archived = 0 + ) AS anc ON p.uuid = anc.person_uuid_anc + LEFT JOIN ( + SELECT person_uuid, date_visit, hiv_test_result2, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY date_visit DESC) AS rowNums + FROM hts_client + WHERE hiv_test_result2 = 'Positive' + AND date_visit BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) as hts_retest ON p.uuid = hts_retest.person_uuid + LEFT JOIN base_organisation_unit facility ON facility.id=p.facility_id + LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id + LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id + LEFT JOIN base_organisation_unit res_state ON res_state.id=CAST(r.stateid AS BIGINT) + LEFT JOIN base_organisation_unit res_lga ON res_lga.id=CAST(r.lgaid AS BIGINT) + LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=p.facility_id AND boui.name='DATIM_ID' + INNER JOIN pmtct_enrollment pmtctenroll ON pmtctenroll.person_uuid = p.uuid + LEFT JOIN ( + SELECT * from pmtct_delivery order by person_uuid,date_of_delivery desc + ) AS delivery ON pmtctenroll.person_uuid = delivery.person_uuid + left join (select distinct on (person_uuid) person_uuid,date_of_visit,dsd_option,visit_status,ga_of_viral_load, date_of_viral_load, result_of_viral_load from pmtct_mother_visitation order by 1,2 desc) pmv on pmv.person_uuid = p.uuid + left join art_status ast on p.uuid = ast.cuPersonUuid + left join pmtct_infant_information pii on pii.mother_person_uuid = delivery.person_uuid + left join pmtct_infant_arv pia on pia.uuid = p.uuid + left join (select * from pmtct_infant_pcr where (test_type ilike '%INFANT_TESTING_PCR_1ST_PCR%')) first on first.infant_hospital_number = pii.hospital_number + left join (select * from pmtct_infant_pcr where (test_type ilike '%INFANT_TESTING_PCR_2ND_PCR%')) second on second.infant_hospital_number = pii.hospital_number + left join (select * from pmtct_infant_pcr where (test_type = 'INFANT_TESTING_PCR_CONFIRMATORY_PCR___IF_PREVIOUS_TEST_POSITIVE')) third on third.infant_hospital_number = pii.hospital_number + left join (select * from pmtct_infant_pcr where (test_type ilike '%INFANT_TESTING_PCR_4TH_PCR%')) fourth on fourth.infant_hospital_number = pii.hospital_number + left join (select * from pmtct_infant_pcr where (test_type = 'INFANT_TESTING_PCR_CONFIRMATORY_PCR')) confirm on confirm.infant_hospital_number = pii.hospital_number + left join cvl on cvl.person_uuid130 = p.uuid + LEFT JOIN (SELECT * FROM (SELECT person_uuid, ga_of_viral_load, date_of_viral_load, result_of_viral_load, ROW_NUMBER () OVER (PARTITION BY person_uuid ORDER BY date_of_viral_load DESC) AS rnkkkk + FROM pmtct_mother_visitation WHERE date_of_viral_load BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) AND result_of_viral_load IS NOT NULL AND result_of_viral_load BETWEEN 32 AND 36) subQuery where rnkkkk = 1) gaViral ON gaViral.person_uuid = p.uuid + WHERE p.archived=0 and p.sex='Female' and (anc.anc_no is not null or pmtctenroll.entry_point ilike '%PMTCT_ENTRY%') + AND p.facility_id=?1 AND p.date_of_registration BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) as pmtct prep-query-name: prep prep-query: SELECT prep.datimid AS "Facility Id (Datim)", - prep.state AS "State", prep.lga AS "LGA", prep.facilityname AS "Facility Name", - prep.personuuid AS "Patient Identifier", prep.hospitalNumber AS "Hospital Number", - prep.sex AS "Sex",prep.targetgroup AS "Target Group", prep.age AS "Age", prep.dateofbirth AS "Date Of Birth (yyyy-mm-dd)", - prep.phone AS "Phone Number", prep.maritalstatus AS "Marital Status", - prep.residentiallga AS "LGA of Residence", prep.residentialstate AS "State Of Residence", - prep.education AS "Education", prep.occupation AS "Occupation", prep.familyPlanning as "Family Planning", - prep.dateOfFamilyPlanning as "Date Of Family Planning (yyyy-mm-dd)", - prep.dateofregistration AS "Date Of Registration (yyyy-mm-dd)", prep.prepcommencementdate AS "Date Of Commencement (yyyy-mm-dd)", - prep.baselineregimen AS "Baseline Regimen", prep.prepType AS "Prep Type", prep.prepdistributionsetting AS "Prep Distribution Setting", - prep.baselinesystolicbp AS "Baseline Systolic bp", prep.baselinediastolicbp AS "Baseline Diastolic bp", prep.baselineweight AS "Baseline Weight (kg)", - prep.baselineheight AS "Baseline Height (cm)", prep.baseLinecreatinine AS "Baseline Creatinine", prep.baselinehepatitisb AS "Baseline Hepatitis B", - prep.baselinehepatitisc AS "Baseline Hepatitis C", prep.hivstatusatprepinitiation AS "HIV status at PrEP Initiation", - prep.baselineurinalysis AS "Baseline Urinalysis", prep.baselineurinalysisdate AS "Baseline Urinalysis Date", - prep.baseLineAlt AS "Baseline ALT", prep.baseLineHbsag AS "Baseline HBsAG", prep.baseLineHbPcv AS "Baseline HB/PCV", prep.baseLineWbc AS "Baseline WBC", - prep.indicationforprep AS "Indication for PrEP", prep.currentregimen AS "Current Regimen", prep.duration AS "Drug refill period (duration)", prep.currentPrepType AS "Current Prep Type", prep.currentPrepDistributionSetting AS "Current Prep Distribution Setting", prep.DateOfLastPickup AS "Date Of Last Pickup (yyyy-mm-dd)", - prep.CurrentStatus AS "Current Status", prep.DateOfCurrentStatus AS "Date Of Current Status (yyyy-mm-dd)", prep.currentSystolicBP AS "Current Systolic bp", - prep.currentDiastolicBP AS "Current Diastolic bp", prep.currentWeight AS "Current Weight (kg)", prep.currentHeight AS "Current Height (cm)", - prep.currentHivStatus AS "Current HIV Status", prep.DateOfCurrentHIVStatus AS "Date of Current HIV Status (yyyy-mm-dd)", - prep.currentUrinalysis AS "Current Urinalysis", prep.currentUrinalysisDate AS "Date of Current Urinalysis", - prep.currentAltDate AS "Date of Current ALT", prep.currentAlt AS "Current ALT", - prep.currentHbsagDate AS "Date of Current HBsAG", prep.currentHbsag AS "Current HBsAG", - prep.currentHbpcvDate AS "Date of Current HB/PCV", prep.currentHbpcv AS "Current HB/PCV", - prep.currentWbcDate AS "Date of Current WBC", prep.currentWbc AS "Current WBC", - prep.pregnancyStatus AS "Pregnancy Status", prep.InterruptionType as "PrEP Discontinuation Type", prep.InterruptionReason AS "Reasons for discontinuation/Stopped", - prep.InterruptionDate AS "Date of Discontinuation/Stopped", prep.hivEnrollmentDate AS "Date Of HIV Enrollment (yyyy-mm-dd)" - FROM ( - SELECT DISTINCT ON (p.uuid)p.uuid AS PersonUuid, p.id, p.uuid,p.hospital_number as hospitalNumber, - INITCAP(p.surname) AS surname, INITCAP(p.first_name) as firstName, - he.date_of_registration AS hivEnrollmentDate, - EXTRACT(YEAR from AGE(NOW(), date_of_birth)) as age, - p.other_name as otherName, p.sex as sex, p.date_of_birth as dateOfBirth, - p.date_of_registration as dateOfRegistration, p.marital_status->>'display' as maritalStatus, - education->>'display' as education, p.employment_status->>'display' as occupation, - facility.name as facilityName, facility_lga.name as lga, facility_state.name as state, - boui.code as datimId, (SELECT name FROM base_organisation_unit WHERE id = CAST(NULLIF(p.address->'address'->0 ->'stateId' ->> 0,'') AS BIGINT)) as residentialState, (SELECT name FROM base_organisation_unit WHERE id = CAST(CASE WHEN p.address->'address'->0->'district'->>0 ~ '^\\d+$' THEN NULLIF(p.address->'address'->0->'district'->>0, '') ELSE NULL END AS BIGINT)) AS residentialLga, - r.address as address, (CASE WHEN contact_point->'contactPoint'->0->>'type'='phone' THEN contact_point->'contactPoint'->0->>'value' ELSE null END) AS phone, - baseline_reg.regimen AS baselineRegimen, - (select display from base_application_codeset where code = baseline_reg.prep_type) as prepType, - (select display from base_application_codeset where code = baseline_pc.prep_distribution_setting) AS prepDistributionSetting, - baseline_bp.systolic AS baselineSystolicBP, - baseline_bp.diastolic AS baselineDiastolicBP, - baseline_pc.weight AS baselineWeight, - baseline_pc.height AS baselineHeight, - (CASE WHEN tg.display IS NULL THEN null ELSE tg.display END) AS targetGroup, - baseline_pc.encounter_date AS prepCommencementDate, - baseline_urinalysis.result AS baseLineUrinalysis, - baseline_urinalysis.test_date AS baseLineUrinalysisDate, - baseline_creatinine.other_test_result AS baseLineCreatinine, - baseline_creatinine.other_test_date AS baseLineCreatinineTestDate, - baseline_alt.other_test_result AS baseLineAlt, - baseline_hbsag.other_test_result AS baseLineHbsag, - baseline_hbpcv.other_test_result AS baseLineHbPcv, - baseline_wbc.other_test_result AS baseLineWbc, - current_alt.other_test_result as currentAlt, - current_alt.other_test_date as currentAltDate, - current_hbsag.other_test_result as currentHbsag, - current_hbsag.other_test_date as currentHbsagDate, - current_hbpcv.other_test_result as currentHbpcv, - current_hbpcv.other_test_date as currentHbpcvDate, - current_wbc.other_test_result as currentWbc, - current_wbc.other_test_date as currentWbcDate, - (CASE WHEN baseline_pc.hepatitis->>'result' LIKE 'Hepatitis B%' - THEN baseline_pc.hepatitis->>'result' ELSE NULL END) AS baseLineHepatitisB, - (CASE WHEN baseline_pc.hepatitis->>'result' LIKE 'Hepatitis C%' - THEN baseline_pc.hepatitis->>'result' ELSE NULL END) AS baseLineHepatitisC, - (select display from base_application_codeset where code = current_pi.interruption_type) as InterruptionType, - current_pi.reason_stopped AS InterruptionReason, - current_pi.interruption_date AS InterruptionDate, - (CASE WHEN baseline_hiv_status.display IS NULL AND base_eli_test.base_eli_hiv_result IS NOT NULL - THEN base_eli_test.base_eli_hiv_result ELSE - REPLACE(baseline_hiv_status.display, 'HIV ', '') END) AS HIVStatusAtPrEPInitiation, - (CASE WHEN prepe.extra->'prep'->>'onDemandIndication' IS NOT NULL THEN prepe.extra->>'onDemandIndication' - WHEN riskt.display IS NOT NULL THEN riskt.display ELSE NULL END) AS indicationForPrEP, - current_reg.regimen AS currentRegimen, - current_pc.duration, - (SELECT display FROM base_application_codeset where code = current_reg.prep_type) as currentPrepType, - (select display from base_application_codeset where code = current_pc.prep_distribution_setting) AS currentPrepDistributionSetting, - current_pc.encounter_date AS DateOfLastPickup, - current_pc.systolic AS currentSystolicBP, - current_pc.diastolic AS currentDiastolicBP, - current_pc.weight AS currentWeight, - current_pc.height AS currentHeight, - current_pc.urinalysis->>'result' AS currentUrinalysis, - (SELECT display from base_application_codeset where code = current_pc.family_planning) AS familyPlanning, - current_pc.date_of_family_planning AS dateOfFamilyPlanning, - CAST(current_pc.urinalysis->>'testDate' AS DATE) AS currentUrinalysisDate, - (CASE WHEN current_hiv_status.display IS NULL AND eli_hiv_result IS NOT NULL THEN eli_hiv_result - WHEN current_hiv_status.display IS NOT NULL THEN REPLACE(current_hiv_status.display, 'HIV ', '') - WHEN he.date_started IS NOT NULL THEN 'Positive' ELSE NULL - END) AS currentHivStatus, - current_pc.encounter_date AS DateOfCurrentHIVStatus, - (CASE WHEN p.sex='Male' THEN NULL - WHEN current_pc.pregnant IS NOT NULL AND current_pc.pregnant='true' THEN (SELECT display FROM base_application_codeset WHERE code = current_pc.pregnant) - ELSE 'Not Pregnant' END) AS pregnancyStatus, - (CASE - WHEN prepi.interruption_date > prepc.encounter_date THEN bac.display - WHEN prepc.status IS NOT NULL THEN prepc.status - ELSE NULL END) AS CurrentStatus, - (CASE - WHEN prepi.interruption_date > prepc.encounter_date THEN prepi.interruption_date - WHEN prepc.status IS NOT NULL THEN prepc.encounter_date - ELSE NULL END) AS DateOfCurrentStatus - FROM patient_person p - INNER JOIN ( - SELECT * FROM (SELECT p.id, REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(CAST(address_object->>'line' AS text), '"', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '') AS address, - CASE WHEN address_object->>'stateId' ~ '^\\\\d(\\\\.\\\\d)?$' THEN address_object->>'stateId' ELSE null END AS stateId, - CASE WHEN address_object->>'district' ~ '^\\\\d(\\\\.\\\\d)?$' THEN address_object->>'district' ELSE null END AS lgaId - FROM patient_person p, - jsonb_array_elements(p.address-> 'address') with ordinality l(address_object)) as result - ) r ON r.id=p.id - LEFT JOIN (SELECT target_group, person_uuid FROM hts_client) penrol ON penrol.person_uuid=p.uuid - LEFT JOIN (SELECT MAX(visit_date) max_date, person_uuid,target_group AS eli_target FROM prep_eligibility - GROUP BY person_uuid,target_group) e_target ON e_target.person_uuid=p.uuid - LEFT JOIN (SELECT pe.drug_use_history->>'hivTestResultAtvisit' AS eli_hiv_result, max.visit_date, max.person_uuid FROM prep_eligibility pe - INNER JOIN (SELECT DISTINCT MAX(visit_date)visit_date, person_uuid FROM prep_eligibility - GROUP BY person_uuid)max ON max.visit_date=pe.visit_date - AND max.person_uuid=pe.person_uuid)eli_test ON eli_test.person_uuid=p.uuid - LEFT JOIN (SELECT pe.drug_use_history->>'hivTestResultAtvisit' AS base_eli_hiv_result, min.visit_date, min.person_uuid - FROM prep_eligibility pe - INNER JOIN (SELECT DISTINCT MIN(visit_date)visit_date, person_uuid FROM prep_eligibility - GROUP BY person_uuid)min ON min.visit_date=pe.visit_date - AND min.person_uuid=pe.person_uuid)base_eli_test ON base_eli_test.person_uuid=p.uuid - LEFT JOIN base_organisation_unit facility ON facility.id=facility_id - LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id - LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id - LEFT JOIN base_organisation_unit res_state ON res_state.id=CAST(r.stateid AS BIGINT) - LEFT JOIN base_organisation_unit res_lga ON res_lga.id=CAST(r.lgaid AS BIGINT) - LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=facility_id AND boui.name='DATIM_ID' - INNER JOIN prep_enrollment prepe ON prepe.person_uuid = p.uuid - LEFT JOIN base_application_codeset riskt ON riskt.code = prepe.risk_type - LEFT JOIN base_application_codeset tg ON tg.code = penrol.target_group - LEFT JOIN base_application_codeset etg ON etg.code = e_target.eli_target - LEFT JOIN (SELECT DISTINCT pc.* FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MAX(encounter_date)encounter_date, person_uuid, duration FROM prep_clinic - GROUP BY person_uuid, duration)max ON max.encounter_date=pc.encounter_date - AND max.person_uuid=pc.person_uuid WHERE date_prep_start IS NULL)current_pc ON current_pc.person_uuid=p.uuid - LEFT JOIN (SELECT DISTINCT pi.* FROM prep_interruption pi)current_pi ON current_pi.person_uuid=p.uuid - LEFT JOIN prep_regimen current_reg ON current_reg.id = current_pc.regimen_id - LEFT JOIN base_application_codeset current_hiv_status ON current_hiv_status.code = current_pc.hiv_test_result - LEFT JOIN (SELECT pc.* FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MIN(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)min ON min.encounter_date=pc.encounter_date - AND min.person_uuid=pc.person_uuid WHERE date_prep_start IS NOT NULL)baseline_pc ON baseline_pc.person_uuid=p.uuid - LEFT JOIN (SELECT - pc.systolic, pc.diastolic, min.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MIN(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)min ON min.person_uuid=pc.person_uuid - WHERE pc.systolic IS NOT NULL and pc.diastolic IS NOT NULL)baseline_bp ON baseline_bp.person_uuid=p.uuid - LEFT JOIN (SELECT - pc.urinalysis ->> 'result' as result, pc.urinalysis->>'testDate' as test_date, min.person_uuid - FROM prep_clinic pc JOIN (SELECT DISTINCT MIN(date(urinalysis->> 'testDate')) test_date, person_uuid - FROM prep_clinic where urinalysis is not null - GROUP BY person_uuid)min ON min.person_uuid=pc.person_uuid - WHERE pc.urinalysis IS NOT NULL)baseline_urinalysis ON baseline_urinalysis.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MIN(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)min ON min.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_CREATININE')baseline_creatinine ON baseline_creatinine.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MIN(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)min ON min.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_ALT')baseline_alt ON baseline_alt.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MIN(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)min ON min.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_HBSAG')baseline_hbsag ON baseline_hbsag.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MIN(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)min ON min.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_HB_PCV')baseline_hbpcv ON baseline_hbpcv.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MIN(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)min ON min.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_WBC_+_DIFF')baseline_wbc ON baseline_wbc.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MAX(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)max ON max.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_ALT')current_alt ON current_alt.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MAX(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)max ON max.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_HBSAG')current_hbsag ON current_hbsag.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MAX(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)max ON max.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_HB_PCV')current_hbpcv ON current_hbpcv.person_uuid=p.uuid - LEFT JOIN (SELECT - arr.object->>'result' other_test_result, - arr.object->>'name' as other_test_name, - arr.object->>'testDate' as other_test_date, pc.person_uuid FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MAX(encounter_date)encounter_date, person_uuid FROM prep_clinic - GROUP BY person_uuid)max ON max.person_uuid=pc.person_uuid, - jsonb_array_elements(other_tests_done) with ordinality arr(object, position) - WHERE pc.other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_WBC_+_DIFF')current_wbc ON current_wbc.person_uuid=p.uuid - LEFT JOIN prep_regimen baseline_reg ON baseline_reg.id = baseline_pc.regimen_id - LEFT JOIN base_application_codeset baseline_hiv_status ON baseline_hiv_status.code=baseline_pc.hiv_test_result - LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid - LEFT JOIN ( - SELECT pi.id, pi.person_uuid, pi.interruption_date , pi.interruption_type - FROM prep_interruption pi - INNER JOIN (SELECT DISTINCT pi.person_uuid, MAX(pi.interruption_date)interruption_date - FROM prep_interruption pi WHERE pi.archived=0 - GROUP BY pi.person_uuid)pit ON pit.interruption_date=pi.interruption_date - AND pit.person_uuid=pi.person_uuid - WHERE pi.archived=0 - GROUP BY pi.id, pi.person_uuid, pi.interruption_date, pi.interruption_type )prepi ON prepi.person_uuid=p.uuid - LEFT JOIN (SELECT pc.person_uuid, MAX(pc.encounter_date) as encounter_date, pc.duration, - (CASE WHEN (pc.encounter_date + pc.duration) > CAST (NOW() AS DATE) THEN 'Active' - ELSE 'Defaulted' END) status FROM prep_clinic pc - INNER JOIN (SELECT DISTINCT MAX(pc.encounter_date) encounter_date, pc.person_uuid - FROM prep_clinic pc GROUP BY pc.person_uuid) max_p ON max_p.encounter_date=pc.encounter_date - AND max_p.person_uuid=pc.person_uuid - WHERE pc.archived=0 - GROUP BY pc.person_uuid, pc.duration, status)prepc ON prepc.person_uuid=p.uuid - LEFT JOIN base_application_codeset bac ON bac.code=prepi.interruption_type - WHERE p.archived=0 AND p.facility_id=?1 - AND p.date_of_registration BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) - ) prep - ahd-query-name: ahd - ahd-query: SELECT ahd.state AS "State", ahd.lga AS "LGA", ahd.facilityname AS "Facility Name", ahd.datimid AS "Facility Id (Datim)", - ahd.personuuid AS "Patient Identifier", ahd.hospitalNumber AS "Hospital Number", - ahd.sex AS "Sex", ahd.dateofbirth AS "Date Of Birth (yyyy-mm-dd)", ahd.age AS "Age", ahd.body_weight AS "Current Weight", - ahd.hivEnrollmentdate AS "ART start date", ahd.visit_date AS "Date of last visit", ahd.tb_diagnostic_test_type AS "Test Type", ahd.tb_diagnostic_result AS "Test Result", - ahd.date_of_tb_diagnostic_result_received AS "Date Test Done", ahd.staging AS "WHO Staging" + prep.state AS "State", prep.lga AS "LGA", prep.facilityname AS "Facility Name", + prep.personuuid AS "Patient Identifier", prep.hospitalNumber AS "Hospital Number", + prep.sex AS "Sex", + prep.age AS "Age", prep.dateofbirth AS "Date Of Birth (yyyy-mm-dd)", + prep.phone AS "Phone Number", prep.maritalstatus AS "Marital Status", + prep.residentiallga AS "LGA of Residence", prep.residentialstate AS "State Of Residence", + prep.education AS "Education", prep.occupation AS "Occupation", prep.populationType AS "Population Type", prep.visitType AS "Visit Type", prep.dateScreened AS "Date Screened for PrEP", prep.dateScreened AS "Date Eligible for PrEP", prep.dateScreened AS "Date offered PrEP", prep.dateScreened AS "Date willing to commence PrEP", prep.eligibleForPrep AS "Eligible for PrEP", prep.offeredPrep AS "Offered PrEP", prep.willingCommencedPrep AS "Willing to Commence PREP", prep.acceptedToCommencedPrep AS "Accepted to Commence PrEP", prep.reasonsForDecliningPrep AS "Reasons for Declining PrEP", + prep.dateofregistration AS "Date Of Registration (yyyy-mm-dd)", prep.prepCommencedDate AS "Date Of Commencement (yyyy-mm-dd)", + prep.baselineregimen AS "Baseline Regimen", prep.prepType AS "Prep Type", prep.previousClinicPrepType AS "Previous clinic PrEP Type", prep.prepdistributionsetting AS "Prep Distribution Setting", + prep.baselinesystolicbp AS "Baseline Systolic bp", prep.baselinediastolicbp AS "Baseline Diastolic bp", prep.baselineweight AS "Baseline Weight (kg)", + prep.baselineheight AS "Baseline Height (cm)", prep.baseLinecreatinine AS "Baseline Creatinine", prep.baseLineHepatitisB AS "Baseline Hepatitis B", + prep.baselinehepatitisc AS "Baseline Hepatitis C", prep.hivstatusatprepinitiation AS "HIV status at PrEP Initiation", + prep.baselineurinalysis AS "Baseline Urinalysis", prep.baselineurinalysisdate AS "Baseline Urinalysis Date", prep.baseLineliverFunctionTestResult AS "Baseline Liver Function Test", prep.baseLineDateOfLiverFunctionResult AS "Baseline Liver Function Test Date", prep.baseLineAst AS "Baseline AST", + prep.baseLineAlt AS "Baseline ALT", prep.baseLineHbsag AS "Baseline HBsAG", prep.baseLineHbPcv AS "Baseline HB/PCV", prep.baseLineWbc AS "Baseline WBC", prep.baseLineChestXray AS "Baseline Chest Xray", prep.baseLineLipid AS "Baseline Lipid Profile", + prep.currentregimen AS "Current Regimen", prep.previousClinicRegimen AS "Previous clinic Visit Regimen", prep.duration AS "Drug refill period (duration)", prep.currentPrepType AS "Current Prep Type", prep.currentPrepDistributionSetting AS "Current Prep Distribution Setting", prep.DateOfLastPickup AS "Date Of Last Pickup (yyyy-mm-dd)", prep.previousVisitDate AS " Date of Previous Visit", + prep.previousStatus AS " Previous Status", prep.previousStatusDate AS "Previous Status Date",prep.CurrentStatus AS "Current Status", prep.DateOfCurrentStatus AS "Date Of Current Status (yyyy-mm-dd)", prep.currentSystolicBP AS "Current Systolic bp", + prep.currentDiastolicBP AS "Current Diastolic bp", prep.drugHistory AS "History of Drug-Drug Interactions", prep.currentWeight AS "Current Weight (kg)", prep.currentHeight AS "Current Height (cm)", + prep.currentHivStatus AS "Current HIV Status", prep.DateOfCurrentHIVStatus AS "Date of Current HIV Status (yyyy-mm-dd)", + prep.urinalysiResult AS "Current Urinalysis", prep.urinalysisTestDate AS "Date of Current Urinalysis", + prep.altTestDate AS "Date of Current ALT", prep.altTesult AS "Current ALT", + prep.hbsAgTestDate AS "Date of Current HBsAG", prep.hbsAgResult AS "Current HBsAG", + prep.hbpcvTestDate AS "Date of Current HB/PCV", prep.hbpcvResult AS "Current HB/PCV", + prep.wbcTestDate AS "Date of Current WBC", prep.wbcResult AS "Current WBC", prep.dateOfLiverFunctionResult AS "Date of Current Liver Function Test", prep.liverFunctionTestResult AS "Current Liver Function Test", prep.astTestDate AS "Date of Current AST", prep.astResult AS "Current AST",prep.creatineTestDate AS "Date of Current Creatinine", prep.creatineResult AS "Current Creatinine", prep.chestXrayTestDate AS "Date of Current Chest Xray", prep.chestXrayResult AS "Current Chest Xray", prep.lipidTestDate AS "Date of Current Lipid Profile", prep.lipidResult AS "Current Lipid Profile", + prep.pregnancyStatus AS "Pregnancy Status", prep.InterruptionType as "PrEP Discontinuation Type", prep.InterruptionReason AS "Reasons for discontinuation/Stopped", + prep.InterruptionDate AS "Date of Discontinuation/Stopped", prep.hivEnrollmentDate AS "Date Of HIV Enrollment (yyyy-mm-dd)", prep.healthCareWorker AS "Service Provider", prep.evenDate AS "Date of Adverse Events", prep.eventDescription AS "Adverse Events" FROM ( SELECT DISTINCT ON (p.uuid)p.uuid AS PersonUuid, p.id, p.uuid,p.hospital_number as hospitalNumber, INITCAP(p.surname) AS surname, INITCAP(p.first_name) as firstName, - coalesce(he.date_of_registration, he.date_started) AS hivEnrollmentDate, - EXTRACT(YEAR from AGE(NOW(), date_of_birth)) as age, + he.date_of_registration AS hivEnrollmentDate, pCommenced.encounter_date AS prepCommencedDate, + EXTRACT(YEAR from AGE(CAST('?3' AS DATE), date_of_birth)) as age, p.other_name as otherName, p.sex as sex, p.date_of_birth as dateOfBirth, p.date_of_registration as dateOfRegistration, p.marital_status->>'display' as maritalStatus, education->>'display' as education, p.employment_status->>'display' as occupation, - facility.name as facilityName, facility_lga.name as lga, facility_state.name as state, boui.code as datimId, - testType.date_of_tb_diagnostic_result_received, testType.tb_diagnostic_test_type, testType.tb_diagnostic_result, - lastVisit.visit_date, lastVisit.staging, weight.body_weight + facility.name as facilityName, facility_lga.name as lga, facility_state.name as state,(CASE WHEN contact_point->'contactPoint'->0->>'type'='phone' THEN contact_point->'contactPoint'->0->>'value' ELSE null END) AS phone, + boui.code as datimId, (SELECT name FROM base_organisation_unit WHERE id = CAST(NULLIF(p.address->'address'->0 ->'stateId' ->> 0,'') AS BIGINT)) as residentialState, (SELECT name FROM base_organisation_unit WHERE id = CAST(CASE WHEN p.address->'address'->0->'district'->>0 ~ '^[0-9\\\\.]+$' THEN NULLIF(p.address->'address'->0->'district'->>0, '') ELSE NULL END AS BIGINT)) AS residentialLga, + previousClinic.encounter_date AS previousVisitDate, (select display from base_application_codeset where code = previousClinic.prep_type) AS previousClinicPrepType, (SELECT regimen From prep_regimen where id = previousClinic.regimen_id) AS previousClinicRegimen, + (SELECT display FROM base_application_codeset where code = current_pc.history_of_drug_to_drug_interaction) AS drugHistory, + (CASE WHEN p.sex='Male' THEN NULL + WHEN current_pc.pregnant IS NOT NULL AND current_pc.pregnant='true' THEN 'Pregnant' + WHEN current_pc.pregnant IS NOT NULL AND current_pc.pregnant='PREGANACY_STATUS_PREGNANT' THEN (SELECT display FROM base_application_codeset WHERE code = current_pc.pregnant) + WHEN current_pc.pregnant IS NOT NULL AND current_pc.pregnant='PREGANACY_STATUS_BREASTFEEDING' THEN (SELECT display FROM base_application_codeset WHERE code = current_pc.pregnant) + WHEN current_pc.pregnant IS NOT NULL AND current_pc.pregnant='PREGANACY_STATUS_POST_PARTUM' THEN (SELECT display FROM base_application_codeset WHERE code = current_pc.pregnant) + ELSE 'Not Pregnant' END) AS pregnancyStatus, (select regimen from prep_regimen WHERE id = baselineClinic.regimenId) AS baselineRegimen, + (select display from base_application_codeset where code = (select prep_type from prep_regimen WHERE id = baselineClinic.regimenId) ) as prepType, + (select display from base_application_codeset where code = baselineClinic.prep_distribution_setting) AS prepDistributionSetting, + baselineClinic.systolic AS baselineSystolicBP, baselineClinic.diastolic AS baselineDiastolicBP, baselineClinic.weight AS baselineWeight, baselineClinic.height AS baselineHeight, COALESCE (baselineClinic.creatineResult, baselineClinic.creatinine->>'result') AS baseLineCreatinine, COALESCE (CAST(baselineClinic.creatineTestDate AS DATE), CAST(NULLIF(baselineClinic.creatinine->>'testDate', '') AS DATE)) AS baseLineCreatinineDate, + baselineClinic.altTesult AS baseLineAlt, baselineClinic.hbsAgResult AS baseLineHbsag, baselineClinic.hbpcvResult AS baseLineHbPcv, COALESCE (baselineClinic.urinalysiResult, baselineClinic.urinalysis->>'result') AS baseLineUrinalysis, COALESCE (CAST(baselineClinic.urinalysisTestDate AS DATE), CAST(NULLIF(baselineClinic.urinalysis->>'testDate', '') AS DATE)) AS baseLineUrinalysisDate, + baselineClinic.wbcResult AS baseLineWbc, baselineClinic.lipidResult AS baseLineLipid, baselineClinic.chestXrayResult AS baseLineChestXray, baselineClinic.astResult AS baseLineAst, baselineClinic.baseLineHepatitisB AS baseLineHepatitisB, baselineClinic.baseLineHepatitisC AS baseLineHepatitisC, + (select regimen from prep_regimen WHERE id = current_pc.regimen_id) AS currentRegimen, + current_pc.duration AS duration, (select display from base_application_codeset where code = (select prep_type from prep_regimen WHERE id = current_pc.regimen_id)) as currentPrepType, + (select display from base_application_codeset where code = current_pc.prep_distribution_setting) AS currentPrepDistributionSetting, current_pc.encounter_date AS DateOfLastPickup, current_pc.systolic AS currentSystolicBP, current_pc.diastolic AS currentDiastolicBP, + current_pc.weight AS currentWeight, current_pc.height AS currentHeight, (CASE WHEN current_pc.hiv_test_result ILIKE '%Negative%' THEN 'Negative' WHEN current_pc.hiv_test_result ILIKE '%Positive%' THEN 'Positive' ELSE NULL END) AS currentHivStatus, + current_pc.encounter_date AS DateOfCurrentHIVStatus, (select display from base_application_codeset where code = current_pi.interruption_type) as InterruptionType, current_pi.reason_stopped AS InterruptionReason, current_pi.interruption_date AS InterruptionDate, + current_pc.health_care_worker_signature AS healthCareWorker, CASE WHEN current_pc.visit_type = 'PREP_VISIT_TYPE_METHOD_SWITCH' THEN (select display from base_application_codeset where code = current_pc.prep_type) ELSE null END AS methodSwitch, + (select display from base_application_codeset where code = current_pc.population_type) AS populationType, + (CASE + WHEN current_pi.interruption_date <= current_pc.encounter_date + THEN + (CASE + WHEN (current_pi.interruption_type ILIKE '%Stopped%' OR current_pi.interruption_type ILIKE '%Discon%') AND prepc.status ILIKE '%Active%' + THEN 'Restart' + ELSE current_pi.interruption_type + END) + ELSE prepc.status + END) + AS CurrentStatus, + COALESCE (prepc.statusDate,current_pc.encounter_date) AS DateOfCurrentStatus, + (CASE + WHEN previousClinic.encounter_date IS NULL THEN NULL + WHEN current_pi.interruption_date <= current_pc.encounter_date THEN current_pi.interruption_type + WHEN (previousClinic.encounter_date + previousClinic.duration) <= current_pc.encounter_date THEN 'Defaulted' + ELSE 'Active' END) AS previousStatus, + (CASE + WHEN current_pi.interruption_date <= current_pc.encounter_date THEN current_pi.interruption_date + WHEN previousClinic.encounter_date IS NULL THEN NULL + WHEN (previousClinic.encounter_date + previousClinic.duration) <= current_pc.encounter_date THEN previousClinic.encounter_date + ELSE previousClinic.encounter_date END) AS previousStatusDate, + COALESCE (current_pc.creatineResult, current_pc.creatinine->>'result') AS creatineResult, + COALESCE (CAST(current_pc.creatineTestDate AS DATE), CAST(NULLIF(current_pc.creatinine->>'testDate', '') AS DATE)) AS creatineTestDate, current_pc.altTesult, CAST(NULLIF(current_pc.altTestDate, NULL) AS DATE) AS altTestDate, current_pc.hbsAgResult, CAST(NULLIF(current_pc.hbsAgTestDate, NULL) AS DATE) AS hbsAgTestDate, current_pc.hbpcvResult, CAST(NULLIF(current_pc.hbpcvTestDate, null) AS DATE) AS hbpcvTestDate, + COALESCE (current_pc.urinalysiResult, current_pc.urinalysis->>'result') AS urinalysiResult, COALESCE (CAST(current_pc.urinalysisTestDate AS DATE), CAST(NULLIF(current_pc.urinalysis->>'testDate', '') AS DATE)) AS urinalysisTestDate, + current_pc.wbcResult, CAST(NULLIF(current_pc.wbcTestDate, NULL) AS DATE) AS wbcTestDate, current_pc.lipidResult, CAST(NULLIF(current_pc.lipidTestDate, NULL) AS DATE) AS lipidTestDate, current_pc.chestXrayResult, CAST(NULLIF(current_pc.chestXrayTestDate, NULL) AS DATE) AS chestXrayTestDate, current_pc.astResult, CAST(NULLIF(current_pc.astTestDate, NULL) AS DATE) AS astTestDate, + (CASE WHEN baselineClinic.hiv_test_result ILIKE '%Negative%' THEN 'Negative' WHEN baselineClinic.hiv_test_result ILIKE '%Positive%' THEN 'Positive' ELSE NULL END) AS HIVStatusAtPrEPInitiation, + current_pc.liverFunctionResult AS liverFunctionTestResult, current_pc.date_of_liver_function_test_results AS dateOfLiverFunctionResult, + baselineClinic.liverFunctionResult AS baseLineliverFunctionTestResult, baselineClinic.date_of_liver_function_test_results AS baseLineDateOfLiverFunctionResult, + pEligiblity.willingCommencedPrep, pEligiblity.reasonsForDecliningPrep, pEligiblity.dateScreened, + (CASE WHEN hc.hiv_test_result = 'Positive' THEN 'No' WHEN hc.prep_offered IS true THEN 'Yes' WHEN hc.prep_offered IS false THEN 'No' ELSE NULL END) AS offeredPrep, (CASE WHEN hc.hiv_test_result = 'Positive' THEN 'No' WHEN hc.prep_accepted IS true THEN 'Yes' WHEN hc.prep_accepted IS FALSE THEN 'No' ELSE NULL END) AS acceptedToCommencedPrep, (CASE WHEN hc.hiv_test_result = 'Negative' OR pEligiblity.score = 1 THEN 'Yes' ELSE 'No' END) AS eligibleForPrep, + adr.adverse_effect->>'eventDescription' AS eventDescription, adr.report_date AS evenDate, (SELECT display from base_application_codeset where code = current_pc.visit_type) AS visitType FROM patient_person p - LEFT JOIN base_organisation_unit facility ON facility.id=facility_id + INNER JOIN prep_enrollment prepe ON prepe.person_uuid = p.uuid AND prepe.archived = 0 + LEFT JOIN hts_client hc ON hc.person_uuid = prepe.person_uuid AND hc.archived = 0 + LEFT JOIN adr_table adr ON adr.patient_uuid = prepe.person_uuid + LEFT JOIN hiv_enrollment he ON he.person_uuid = prepe.person_uuid + INNER JOIN ( + SELECT * FROM (SELECT p.id, REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(CAST(address_object->>'line' AS text), '"', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '') AS address, + CASE WHEN address_object->>'stateId' ~ '^\\\\d(\\\\.\\\\d)?$' THEN address_object->>'stateId' ELSE null END AS stateId, + CASE WHEN address_object->>'district' ~ '^\\\\d(\\\\.\\\\d)?$' THEN address_object->>'district' ELSE null END AS lgaId + FROM patient_person p, + jsonb_array_elements(p.address-> 'address') with ordinality l(address_object)) as result + ) r ON r.id=p.id + LEFT JOIN base_organisation_unit facility ON facility.id=p.facility_id LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id - LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=facility_id AND boui.name='DATIM_ID' - LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid + LEFT JOIN base_organisation_unit res_state ON res_state.id=CAST(r.stateid AS BIGINT) + LEFT JOIN base_organisation_unit res_lga ON res_lga.id=CAST(r.lgaid AS BIGINT) + LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=p.facility_id AND boui.name='DATIM_ID' + LEFT JOIN prep_clinic pCommenced ON pCommenced.person_uuid = prepe.person_uuid AND is_commencement IS TRUE AND pCommenced.archived = 0 + LEFT JOIN ( + SELECT * FROM ( + SELECT pi.person_uuid, (select display from base_application_codeset where code = pi.interruption_type) AS interruption_type, pi.interruption_date, pi.interruption_reason, reason_stopped, ROW_NUMBER() OVER (PARTITION BY pi.person_uuid ORDER BY pi.interruption_date DESC) rnk FROM prep_interruption pi + WHERE archived = 0 AND pi.interruption_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) interruption WHERE rnk = 1 ) + current_pi ON current_pi.person_uuid=p.uuid + LEFT JOIN ( + SELECT * FROM( + SELECT DISTINCT pc.*, + currentCreatine.result AS creatineResult,currentCreatine.test_date AS creatineTestDate, currentALt.result AS altTesult, currentALt.test_date AS altTestDate, currentHbsAg.result AS hbsAgResult, currentHbsAg.test_date AS hbsAgTestDate, + currentHbpcv.result AS hbpcvResult, currentHbpcv.test_date AS hbpcvTestDate, currentUrinalysis.result AS urinalysiResult, currentUrinalysis.test_date AS urinalysisTestDate, currentWbc.result AS wbcResult, currentWbc.test_date AS wbcTestDate, + currentLipidProfile.result AS lipidResult, currentLipidProfile.test_date AS lipidTestDate, currentChestXray.result AS chestXrayResult, currentChestXray.test_date AS chestXrayTestDate, currentAst.result AS astResult, currentAst.test_date AS astTestDate, liverResult.liverFunctionResult, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY encounter_date DESC) rnk + FROM prep_clinic pc + LEFT JOIN LATERAL ( + SELECT STRING_AGG((SELECT display FROM base_application_codeset WHERE code = liverResult), ', ') AS liverFunctionResult + FROM jsonb_array_elements_text(pc.liver_function_test_results) AS liverResult + ) liverResult ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name,arr.object->>'result' AS result,arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_CREATININE%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_CREATININE%' + LIMIT 1 + ) currentCreatine ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name,arr.object->>'result' AS result,arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_ALT%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_ALT%' + LIMIT 1 + ) currentALt ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_HBSAG%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_HBSAG%' + LIMIT 1 + ) currentHbsAg ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_HB_PCV%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_HB_PCV%' + LIMIT 1 + ) currentHbpcv ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_URINALYSIS%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_URINALYSIS%' + LIMIT 1 + ) currentUrinalysis ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_WBC_+_DIFF%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_WBC_+_DIFF%' + LIMIT 1 + ) currentWbc ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_LIPID_PROFILE%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_LIPID_PROFILE%' + LIMIT 1 + ) currentLipidProfile ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_CHEST_XRAY_%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_CHEST_XRAY_%' + LIMIT 1 + ) currentChestXray ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_AST%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_AST%' + LIMIT 1 + ) currentAst ON TRUE + WHERE is_commencement = false AND pc.archived = 0 ) subQ where rnk = 1 AND encounter_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + )current_pc ON current_pc.person_uuid=prepe.person_uuid + LEFT JOIN ( + SELECT person_uuid, encounter_date, regimen_id, prep_type, duration, rnk FROM ( + SELECT person_uuid, encounter_date, regimen_id, prep_type, duration, ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY encounter_date DESC) rnk + FROM prep_clinic WHERE archived = 0 AND is_commencement = false AND archived = 0 + AND encounter_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) subQ + WHERE rnk = 2 + ) previousClinic ON previousClinic.person_uuid = prepe.person_uuid + LEFT JOIN ( + SELECT + pc.person_uuid, + CASE + WHEN (is_on.interruption_date > pc.encounter_date) THEN is_on.status + WHEN pc.visit_type ILIKE '%PREP_VISIT_TYPE_INITIATION%' AND pc.regimen_id = 2 THEN + CASE + WHEN pc.encounter_date + pc.duration + INTERVAL '29 day' < CAST('?3' AS DATE) THEN 'Discontinued' + WHEN CAST((pc.encounter_date + pc.duration + INTERVAL '7 day') AS DATE) < CAST('?3' AS DATE) THEN 'Delayed Injection' + ELSE 'Active' + END + WHEN pc.visit_type ILIKE '%PREP_VISIT_TYPE_SECOND_INITIATION%' AND pc.regimen_id = 2 THEN + CASE + WHEN pc.encounter_date + pc.duration + INTERVAL '29 day' < CAST('?3' AS DATE) THEN 'Discontinued' + WHEN CAST((pc.encounter_date + pc.duration + INTERVAL '7 day') AS DATE) < CAST('?3' AS DATE) THEN 'Delayed Injection' + ELSE 'Active' + END + WHEN (pc.encounter_date + pc.duration) > CAST('?3' AS DATE) + THEN 'Active' + ELSE 'Defaulted' + END AS status, + CASE + WHEN (is_on.interruption_date > pc.encounter_date) THEN is_on.interruption_date + WHEN (pc.encounter_date + pc.duration) > CAST('?3' AS DATE) + THEN pc.encounter_date + ELSE null + END AS statusDate + FROM ( + SELECT + person_uuid, encounter_date, duration,regimen_id, next_appointment, visit_type, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY encounter_date DESC ) AS rank + FROM + prep_clinic + WHERE + archived = 0 AND is_commencement IS FALSE + ) pc + LEFT JOIN ( + SELECT + person_uuid, interruption_date, interruption.display AS status, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY interruption_date DESC) AS rank + FROM + prep_interruption pi + LEFT JOIN base_application_codeset interruption + ON interruption.code = pi.interruption_type + WHERE + pi. archived = 0 AND interruption_date <= CAST('?3' AS DATE) + ) is_on + ON is_on.person_uuid = pc.person_uuid AND is_on.rank = 1 + WHERE + pc.rank = 1 + ) prepc ON prepc.person_uuid=p.uuid + LEFT JOIN ( + SELECT * FROM ( + SELECT + person_uuid as personUuidBaseline, systolic, diastolic, weight, height, encounter_date, regimen_id AS regimenId, prep_distribution_setting, hiv_test_result, liver_function_test_result, date_of_liver_function_test_results, + CASE WHEN hepatitis->>'result' LIKE 'Hepatitis B%' THEN hepatitis->>'result' ELSE NULL END AS baseLineHepatitisB, creatinine, urinalysis, + CASE WHEN hepatitis->>'result' LIKE 'Hepatitis C%' THEN hepatitis->>'result' ELSE NULL END AS baseLineHepatitisC, + baselineCreatine.result AS creatineResult, baselineCreatine.test_date AS creatineTestDate, baselineALt.result AS altTesult, baselineALt.test_date AS altTestDate, baselineHbsAg.result AS hbsAgResult, + baselineHbsAg.test_date AS hbsAgTestDate, baselineHbpcv.result AS hbpcvResult, baselineHbpcv.test_date AS hbpcvTestDate, baselineUrinalysis.result AS urinalysiResult, baselineUrinalysis.test_date AS urinalysisTestDate, + baselineWbc.result AS wbcResult, baselineWbc.test_date AS wbcTestDate, baselineLipidProfile.result AS lipidResult, baselineLipidProfile.test_date AS lipidTestDate, baselineChestXray.result AS chestXrayResult, + baselineChestXray.test_date AS chestXrayTestDate, baselineAst.result AS astResult, baselineAst.test_date AS astTestDate, baselineLiverResult.liverFunctionResult, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY encounter_date ASC) AS rnk + FROM + prep_clinic pc + LEFT JOIN LATERAL ( + SELECT STRING_AGG((SELECT display FROM base_application_codeset WHERE code = liverResult), ', ') AS liverFunctionResult + FROM jsonb_array_elements_text(pc.liver_function_test_results) AS liverResult + ) baselineLiverResult ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name,arr.object->>'result' AS result,arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_CREATININE%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_CREATININE%' + LIMIT 1 + ) baselineCreatine ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name,arr.object->>'result' AS result,arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_ALT%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_ALT%' + LIMIT 1 + ) baselineALt ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_HBSAG%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_HBSAG%' + LIMIT 1 + ) baselineHbsAg ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_HB_PCV%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_HB_PCV%' + LIMIT 1 + ) baselineHbpcv ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_URINALYSIS%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_URINALYSIS%' + LIMIT 1 + ) baselineUrinalysis ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_WBC_+_DIFF%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_WBC_+_DIFF%' + LIMIT 1 + ) baselineWbc ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_LIPID_PROFILE%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_LIPID_PROFILE%' + LIMIT 1 + ) baselineLipidProfile ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_CHEST_XRAY_%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_CHEST_XRAY_%' + LIMIT 1 + ) baselineChestXray ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_AST%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_AST%' + LIMIT 1 + ) baselineAst ON TRUE + WHERE + is_commencement = FALSE + AND archived = 0 + ) baselineRecords where rnk = 1 + ) baselineClinic ON prepe.person_uuid = baselineClinic.personUuidBaseline + LEFT JOIN ( + select + unique_id, uuid, visit_date AS dateScreened, score, visit_type, + (CASE WHEN services_received_by_client->>'willingToCommencePrep' = 'true' THEN 'Yes' WHEN services_received_by_client->>'willingToCommencePrep' = 'false' THEN 'No' ELSE null END) AS willingCommencedPrep, (SELECT display FROM base_application_codeset where code = REPLACE(REPLACE(REPLACE(services_received_by_client->>'reasonsForDecline', '[',''),']',''),'"','')) AS reasonsForDecliningPrep + from prep_eligibility + WHERE archived = 0 + ) pEligiblity ON prepe.prep_eligibility_uuid = pEligiblity.uuid + WHERE p.archived=0 AND p.facility_id=?1 + AND p.date_of_registration BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) prep + ahd-query-name: ahd + ahd-query: WITH careCardCD4 AS ( + SELECT + visit_date, + COALESCE(CAST(cd_4 AS VARCHAR), cd4_semi_quantitative) AS cd_4, + person_uuid AS cccd4_person_uuid + FROM + public.hiv_art_clinical + WHERE + is_commencement IS TRUE + AND archived = 0 + AND cd_4 != 0 + ), + labCD4 AS ( + SELECT * FROM ( + SELECT + sm.patient_uuid AS cd4_person_uuid, + sm.result_reported AS cd4Lb, + sm.date_result_reported AS dateOfCD4Lb, + ROW_NUMBER() OVER (PARTITION BY sm.patient_uuid ORDER BY date_result_reported DESC) AS rnk + FROM + public.laboratory_result sm + INNER JOIN + public.laboratory_test lt ON sm.test_id = lt.id + WHERE + lt.lab_test_id IN (1, 50) + AND sm.date_result_reported IS NOT NULL + AND sm.archived = 0 + ) AS cd4_result + WHERE + cd4_result.rnk = 1 + ), + sample_collection_date AS ( + SELECT + CAST(sample.date_sample_collected AS DATE) AS DateOfViralLoadSampleCollection, + sample.patient_uuid AS person_uuid120 + FROM ( + SELECT + sm.facility_id, + sm.date_sample_collected, + sm.patient_uuid, + sm.archived, + ROW_NUMBER() OVER (PARTITION BY sm.patient_uuid ORDER BY date_sample_collected DESC) AS rnkk + FROM + public.laboratory_sample sm + INNER JOIN + public.laboratory_test lt ON lt.id = sm.test_id + WHERE + lt.lab_test_id = 16 + AND lt.viral_load_indication != 719 + AND date_sample_collected IS NOT NULL + AND date_sample_collected <= '?3' + ) AS sample + WHERE + sample.rnkk = 1 + AND (sample.archived IS NULL OR sample.archived = 0) + AND sample.facility_id = ?1 + ), + current_vl_result AS ( + SELECT * FROM ( + SELECT + CAST(ls.date_sample_collected AS DATE) AS dateOfCurrentViralLoadSample, + sm.patient_uuid AS person_uuid130, + sm.result_reported AS currentViralLoad, + acode.display AS viralLoadIndication, + CAST(sm.date_result_reported AS DATE) AS dateOfCurrentViralLoad, + ROW_NUMBER() OVER (PARTITION BY sm.patient_uuid ORDER BY date_result_reported DESC) AS rank2 + FROM + public.laboratory_result sm + INNER JOIN + public.laboratory_test lt ON sm.test_id = lt.id + INNER JOIN + public.laboratory_sample ls ON ls.test_id = lt.id + INNER JOIN + public.base_application_codeset acode ON acode.id = lt.viral_load_indication + WHERE + lt.lab_test_id = 16 + AND lt.viral_load_indication != 719 + AND sm.date_result_reported IS NOT NULL + AND sm.date_result_reported <= '?3' + AND sm.result_reported IS NOT NULL + ) AS vl_result + WHERE + vl_result.rank2 = 1 + ), + last_cd4 AS ( + SELECT + p.uuid AS person_uuid, + COALESCE( + cd.cd4Lb, + ccd.cd_4 + ) AS lastCd4Count, + COALESCE( + CAST(cd.dateOfCD4Lb AS DATE), + CAST(ccd.visit_date AS DATE) + ) AS dateOfLastCd4Count + FROM + patient_person p + LEFT JOIN + labCD4 cd ON cd.cd4_person_uuid = p.uuid + LEFT JOIN + careCardCD4 ccd ON ccd.cccd4_person_uuid = p.uuid + ), + viralLoad AS ( + SELECT + CAST(ls.date_sample_collected AS DATE) AS dateOfCurrentViralLoadSample, + sm.patient_uuid AS person_uuid, + sm.result_reported AS currentViralLoad, + acode.display AS viralLoadIndication, + CAST(sm.date_result_reported AS DATE) AS dateOfCurrentViralLoad, + ROW_NUMBER() OVER (PARTITION BY sm.patient_uuid ORDER BY date_result_reported DESC) AS rank2 + FROM + public.laboratory_result sm + INNER JOIN + public.laboratory_test lt ON sm.test_id = lt.id + INNER JOIN + public.laboratory_sample ls ON ls.test_id = lt.id + INNER JOIN + public.base_application_codeset acode ON acode.id = lt.viral_load_indication + WHERE + lt.lab_test_id = 16 + AND lt.viral_load_indication != 719 + AND sm.date_result_reported IS NOT NULL + AND sm.date_result_reported <= '?3' + AND sm.result_reported IS NOT NULL + AND sm.date_result_reported BETWEEN CURRENT_DATE - INTERVAL '1 year' AND CURRENT_DATE + ), + ahd AS ( + SELECT DISTINCT ON (p.uuid) + p.uuid AS PersonUuid, + p.id, + p.hospital_number AS hospitalNumber, + INITCAP(p.surname) AS surname, + INITCAP(p.first_name) AS firstName, + COALESCE(he.date_of_registration, he.date_started) AS hivEnrollmentDate, + (EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), COALESCE(he.date_of_registration, he.date_started))) * 12) + EXTRACT(MONTH FROM AGE(CAST('?3' AS DATE), COALESCE(he.date_of_registration, he.date_started))) AS ArvInterval, + EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), p.date_of_birth)) AS age, + p.other_name AS otherName, + p.sex AS sex, + p.date_of_birth AS dateOfBirth, + p.date_of_registration AS dateOfRegistration, + p.marital_status->>'display' AS maritalStatus, + education->>'display' AS education, + p.employment_status->>'display' AS occupation, + facility.name AS facilityName, + facility_lga.name AS lga, + facility_state.name AS state, + boui.code AS datimId, + testType.date_of_tb_diagnostic_result_received, + testType.tb_diagnostic_test_type, + testType.tb_diagnostic_result, + lastVisit.visit_date, + lastVisit.staging, + COALESCE(lastVisit.stage1Option, lastVisit.stage2Option, lastVisit.stage3Option, lastVisit.stage4Option) AS diseaseCondition, + weight.body_weight, + he.date_of_registration AS Date_of_HIV_diagnosis, + '' AS treatmentDate, + '' AS preventingSymptoms, + (CASE WHEN (EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), p.date_of_birth)) <= 5 OR lastVisit.staging IN ('STAGE III', 'STAGE IV')) THEN 'Yes' ELSE 'No' END) AS ahdStatus + FROM + patient_person p + LEFT JOIN + base_organisation_unit facility ON facility.id = p.facility_id + LEFT JOIN + base_organisation_unit facility_lga ON facility_lga.id = facility.parent_organisation_unit_id + LEFT JOIN + base_organisation_unit facility_state ON facility_state.id = facility_lga.parent_organisation_unit_id + LEFT JOIN + base_organisation_unit_identifier boui ON boui.organisation_unit_id = p.facility_id AND boui.name = 'DATIM_ID' + LEFT JOIN + hiv_enrollment he ON he.person_uuid = p.uuid LEFT JOIN ( - with cur_tb as ( - select sm.patient_uuid, sm.result_reported AS tb_diagnostic_result, + WITH cur_tb AS ( + SELECT + sm.patient_uuid, + sm.result_reported AS tb_diagnostic_result, CAST(sm.date_result_reported AS DATE) AS date_of_tb_diagnostic_result_received, CASE lt.lab_test_id WHEN 65 THEN 'Gene Xpert' @@ -728,61 +1062,540 @@ query: ROW_NUMBER() OVER (PARTITION BY sm.patient_uuid ORDER BY sm.date_result_reported DESC) AS rnk FROM laboratory_result sm - INNER JOIN public.laboratory_test lt ON sm.test_id = lt.id + INNER JOIN + public.laboratory_test lt ON sm.test_id = lt.id WHERE - lt.lab_test_id IN (65, 51, 66, 64) + lt.lab_test_id IN (50, 71, 70, 65, 51, 66, 64, 69) AND sm.archived = 0 - AND sm.date_result_reported IS NOT NULL + AND sm.date_result_reported IS NOT NULL AND sm.facility_id = ?1 - AND sm.date_result_reported <= '?3' + AND sm.date_result_reported <= cast ('?3' AS date) ) - select patient_uuid, tb_diagnostic_result, date_of_tb_diagnostic_result_received, tb_diagnostic_test_type from cur_tb where rnk = 1 + SELECT + patient_uuid, + tb_diagnostic_result, + date_of_tb_diagnostic_result_received, + tb_diagnostic_test_type + FROM + cur_tb + WHERE + rnk = 1 ) testType ON testType.patient_uuid = p.uuid LEFT JOIN ( - SELECT person_uuid, visit_date, bac.display AS staging, - ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY visit_date DESC) AS rnk - FROM hiv_art_clinical hac - LEFT JOIN base_application_codeset bac ON bac.id = hac.clinical_stage_id WHERE hac.visit_date - BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + SELECT + person_uuid, + visit_date, + bac.display AS staging, + (CASE WHEN who->>'stage1ValueOption' != '' THEN REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(who->>'stage1ValueOption', '"', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '') ELSE null END) AS stage1Option, + (CASE WHEN who->>'stage2ValueOption' != '' THEN REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(who->>'stage2ValueOption', '"', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '') ELSE null END) AS stage2Option, + (CASE WHEN who->>'stage3ValueOption' != '' THEN REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(who->>'stage3ValueOption', '"', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '') ELSE null END) AS stage3Option, + (CASE WHEN who->>'stage4ValueOption' != '' THEN REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(who->>'stage4ValueOption', '"', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '') ELSE null END) AS stage4Option, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY visit_date DESC) AS rnk + FROM + hiv_art_clinical hac + LEFT JOIN + base_application_codeset bac ON bac.id = hac.clinical_stage_id + WHERE + hac.visit_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) ) lastVisit ON lastVisit.person_uuid = p.uuid AND lastVisit.rnk = 1 LEFT JOIN ( - SELECT person_uuid, body_weight, capture_date, - ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY capture_date DESC) AS rnk1 - FROM triage_vital_sign WHERE archived = 0 AND capture_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) - ) weight ON weight.person_uuid = p.uuid WHERE weight.rnk1 = 1 - AND p.archived=0 AND p.facility_id=?1 + SELECT + person_uuid, + body_weight, + capture_date, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY capture_date DESC) AS rnk + FROM + triage_vital_sign + WHERE + archived = 0 + AND capture_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) weight ON weight.person_uuid = p.uuid AND weight.rnk = 1 + LEFT JOIN ( + SELECT + person_id, + hiv_status, + status_date, + ROW_NUMBER() OVER (PARTITION BY person_id ORDER BY status_date DESC) AS rnk + FROM + hiv_status_tracker + WHERE + hiv_status IS NOT NULL + AND hiv_status != '' + AND hiv_status != 'HIV_NEGATIVE' + ) currentStatus ON currentStatus.person_id = p.uuid AND currentStatus.rnk = 1 + WHERE + p.archived = 0 + AND p.facility_id = ?1 AND p.date_of_registration BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) - ) ahd + ), + lastCrytococalAntigen AS ( + SELECT + personuuid12, + date_result_reported AS dateOfLastCrytococalAntigen, + result_reported AS lastCrytococalAntigen + FROM ( + SELECT + DISTINCT ON (lr.patient_uuid) + lr.patient_uuid AS personuuid12, + lr.date_result_reported, + lr.result_reported, + ROW_NUMBER() OVER (PARTITION BY lr.patient_uuid ORDER BY lr.date_result_reported DESC) AS rowNum + FROM + public.laboratory_test lt + INNER JOIN + laboratory_result lr ON lr.test_id = lt.id + WHERE + lab_test_id = 52 + ) AS dt + WHERE + rowNum = 1 + ), + lastSerumCrAg AS ( + SELECT + person_uuid, + date_result_reported AS dateOfLastSerumCrAg, + result_reported AS lastSerumCrAg + FROM ( + SELECT + DISTINCT ON (lr.patient_uuid) + lr.patient_uuid AS person_uuid, + lr.date_result_reported, + lr.result_reported, + ROW_NUMBER() OVER (PARTITION BY lr.patient_uuid ORDER BY lr.date_result_reported DESC) AS rowNum + FROM + public.laboratory_test lt + INNER JOIN + laboratory_result lr ON lr.test_id = lt.id + WHERE + lab_test_id = 69 + ) AS dt + WHERE + rowNum = 1 + ), + lastCSFCrAg AS ( + SELECT + person_uuid, + date_result_reported AS dateOfLastCSFCrAg, + result_reported AS lastCSFCrAg + FROM ( + SELECT + DISTINCT ON (lr.patient_uuid) + lr.patient_uuid AS person_uuid, + lr.date_result_reported, + lr.result_reported, + ROW_NUMBER() OVER (PARTITION BY lr.patient_uuid ORDER BY lr.date_result_reported DESC) AS rowNum + FROM + public.laboratory_test lt + INNER JOIN + laboratory_result lr ON lr.test_id = lt.id + WHERE + lab_test_id = 70 + ) AS dt + WHERE + rowNum = 1 + ), + lastVisitect AS ( + SELECT + person_uuid, + date_result_reported AS dateOfLastVisitect, + result_reported AS lastVisitect + FROM ( + SELECT + DISTINCT ON (lr.patient_uuid) + lr.patient_uuid AS person_uuid, + CAST (lr.date_result_reported AS DATE), + lr.result_reported, + ROW_NUMBER() OVER (PARTITION BY lr.patient_uuid ORDER BY lr.date_result_reported DESC) AS rowNum + FROM + public.laboratory_test lt + INNER JOIN + laboratory_result lr ON lr.test_id = lt.id + WHERE + lab_test_id = 50 + ) AS dt + WHERE + rowNum = 1 + ), + cd4Type AS ( + SELECT person_uuid, cd4_type FROM ( + SELECT person_uuid, visit_date, cd4_type, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY visit_date DESC) AS rnkk + FROM hiv_art_clinical where archived = 0 ) sub + WHERE rnkk = 1 + ), + lastLfLam AS ( + SELECT + person_uuid, + date_result_reported AS dateOflastLfLam, + result_reported AS lastLfLam + FROM ( + SELECT + DISTINCT ON (lr.patient_uuid) + lr.patient_uuid AS person_uuid, + CAST (lr.date_result_reported AS DATE), + lr.result_reported, + ROW_NUMBER() OVER (PARTITION BY lr.patient_uuid ORDER BY lr.date_result_reported DESC) AS rowNum + FROM + public.laboratory_test lt + INNER JOIN + laboratory_result lr ON lr.test_id = lt.id + WHERE + lab_test_id = 71 + ) AS dt + WHERE + rowNum = 1 + ), + eac AS ( + with first_eac as ( + select * from (with current_eac as ( + select id, person_uuid, uuid, status, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY id DESC) AS row + from hiv_eac where archived = 0 + ) + select ce.id, ce.person_uuid, hes.eac_session_date, + ROW_NUMBER() OVER (PARTITION BY hes.person_uuid ORDER BY hes.eac_session_date ASC ) AS row from hiv_eac_session hes + join current_eac ce on ce.uuid = hes.eac_id where ce.row = 1 and hes.archived = 0 + and hes.eac_session_date between '?2' and '?3' + and hes.status in ('FIRST EAC')) as fes where row = 1 + ), + last_eac as ( + select * from (with current_eac as ( + select id, person_uuid, uuid, status, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY id DESC) AS row + from hiv_eac where archived = 0 + ) + select ce.id, ce.person_uuid, hes.eac_session_date, + ROW_NUMBER() OVER (PARTITION BY hes.person_uuid ORDER BY hes.eac_session_date DESC ) AS row from hiv_eac_session hes + join current_eac ce on ce.uuid = hes.eac_id where ce.row = 1 and hes.archived = 0 + and hes.eac_session_date between '?2' and '?3' + and hes.status in ('FIRST EAC', 'SECOND EAC', 'THIRD EAC')) as les where row = 1 + ), + eac_count as ( + select person_uuid, CASE WHEN count(*) > 6 THEN 6 ELSE count(*) END as no_eac_session from ( + with current_eac as ( + select id, person_uuid, uuid, status, ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY id DESC) AS row from hiv_eac where archived = 0 + ) + select hes.person_uuid from hiv_eac_session hes + join current_eac ce on ce.person_uuid = hes.person_uuid where ce.row = 1 and hes.archived = 0 + and hes.eac_session_date between '?2' and '?3' + and hes.status in ('FIRST EAC', 'SECOND EAC', 'THIRD EAC') + ) as c group by person_uuid + ), + extended_eac as ( + select * from (with current_eac as ( + select id, person_uuid, uuid, status, + ROW_NUMBER() OVER (PARTITION BY person_uuid ORDER BY id DESC) AS row + from hiv_eac where archived = 0 + ) + select ce.id, ce.person_uuid, hes.eac_session_date, + ROW_NUMBER() OVER (PARTITION BY hes.person_uuid ORDER BY hes.eac_session_date DESC ) AS row from hiv_eac_session hes + join current_eac ce on ce.uuid = hes.eac_id where ce.row = 1 and hes.archived = 0 and hes.status is not null and hes.eac_session_date between '?2' and '?3' + and hes.status not in ('FIRST EAC', 'SECOND EAC', 'THIRD EAC')) as exe where row = 1 + ), + post_eac_vl as ( + select * from(select lt.patient_uuid, cast(ls.date_sample_collected as date), lr.result_reported, cast(lr.date_result_reported as date), + ROW_NUMBER() OVER (PARTITION BY lt.patient_uuid ORDER BY ls.date_sample_collected DESC) AS row + from laboratory_test lt + left join laboratory_sample ls on ls.test_id = lt.id + left join laboratory_result lr on lr.test_id = lt.id + where lt.viral_load_indication = 302 and lt.archived = 0 and ls.archived = 0 + and ls.date_sample_collected between '?2' and '?3') pe where row = 1 + ) + select fe.person_uuid as personUuid, fe.eac_session_date as dateOfCommencementOfEAC, le.eac_session_date as dateOfLastEACSessionCompleted, + ec.no_eac_session as numberOfEACSessionCompleted, exe.eac_session_date as dateOfExtendEACCompletion, + pvl.result_reported as repeatViralLoadResult, pvl.date_result_reported as DateOfRepeatViralLoadResult, + pvl.date_sample_collected as dateOfRepeatViralLoadEACSampleCollection + from first_eac fe + left join last_eac le on le.person_uuid = fe.person_uuid + left join eac_count ec on ec.person_uuid = fe.person_uuid + left join extended_eac exe on exe.person_uuid = fe.person_uuid + left join post_eac_vl pvl on pvl.patient_uuid = fe.person_uuid + ), + currentStatus AS ( + SELECT + DISTINCT ON (pharmacy.person_uuid) pharmacy.person_uuid AS prePersonUuid, + ( + CASE + WHEN stat.hiv_status ILIKE '%DEATH%' OR stat.hiv_status ILIKE '%Died%' THEN 'Died' + WHEN( + stat.status_date > pharmacy.maxdate + AND (stat.hiv_status ILIKE '%stop%' OR stat.hiv_status ILIKE '%out%' OR stat.hiv_status ILIKE '%Invalid %') + )THEN stat.hiv_status + ELSE pharmacy.status + END + ) AS status, + + ( + CASE + WHEN stat.hiv_status ILIKE '%DEATH%' OR stat.hiv_status ILIKE '%Died%'THEN stat.status_date + WHEN( + stat.status_date > pharmacy.maxdate + AND (stat.hiv_status ILIKE '%stop%' OR stat.hiv_status ILIKE '%out%' OR stat.hiv_status ILIKE '%Invalid %') + ) THEN stat.status_date + ELSE pharmacy.visit_date + END + ) AS status_date, + stat.cause_of_death, stat.va_cause_of_death + FROM + ( + SELECT + ( + CASE + WHEN hp.visit_date + hp.refill_period + INTERVAL '29 day' < '?3' THEN 'IIT' + ELSE 'Active' + END + ) status, + ( + CASE + WHEN hp.visit_date + hp.refill_period + INTERVAL '29 day' <'?3' THEN hp.visit_date + hp.refill_period + INTERVAL '29 day' + ELSE hp.visit_date + END + ) AS visit_date, + hp.person_uuid, MAXDATE + FROM + hiv_art_pharmacy hp + INNER JOIN ( + SELECT hap.person_uuid, hap.visit_date AS MAXDATE, ROW_NUMBER() OVER (PARTITION BY hap.person_uuid ORDER BY hap.visit_date DESC) as rnkkk3 + FROM public.hiv_art_pharmacy hap + INNER JOIN public.hiv_art_pharmacy_regimens pr + ON pr.art_pharmacy_id = hap.id + INNER JOIN hiv_enrollment h ON h.person_uuid = hap.person_uuid AND h.archived = 0 + INNER JOIN public.hiv_regimen r on r.id = pr.regimens_id + INNER JOIN public.hiv_regimen_type rt on rt.id = r.regimen_type_id + WHERE r.regimen_type_id in (1,2,3,4,14) + AND hap.archived = 0 + AND hap.visit_date < '?3' + ) MAX ON MAX.MAXDATE = hp.visit_date AND MAX.person_uuid = hp.person_uuid + AND MAX.rnkkk3 = 1 + WHERE + hp.archived = 0 + AND hp.visit_date <= '?3' + ) pharmacy + + LEFT JOIN ( + SELECT + hst.hiv_status, + hst.person_id, + hst.cause_of_death, + hst.va_cause_of_death, + hst.status_date + FROM + ( + SELECT * FROM (SELECT DISTINCT (person_id) person_id, status_date, cause_of_death,va_cause_of_death, + hiv_status, ROW_NUMBER() OVER (PARTITION BY person_id ORDER BY status_date DESC) + FROM hiv_status_tracker WHERE archived=0 AND status_date <='?3' )s + WHERE s.row_number=1 + ) hst + INNER JOIN hiv_enrollment he ON he.person_uuid = hst.person_id + WHERE hst.status_date <='?3' + ) stat ON stat.person_id = pharmacy.person_uuid + + ), + previous AS ( + SELECT + DISTINCT ON (pharmacy.person_uuid) pharmacy.person_uuid AS prePersonUuid, + ( + CASE + WHEN stat.hiv_status ILIKE '%DEATH%' OR stat.hiv_status ILIKE '%Died%' THEN 'Died' + WHEN( + stat.status_date > pharmacy.maxdate + AND (stat.hiv_status ILIKE '%stop%' OR stat.hiv_status ILIKE '%out%' OR stat.hiv_status ILIKE '%Invalid %') + )THEN stat.hiv_status + ELSE pharmacy.status + END + ) AS status, + + ( + CASE + WHEN stat.hiv_status ILIKE '%DEATH%' OR stat.hiv_status ILIKE '%Died%'THEN stat.status_date + WHEN( + stat.status_date > pharmacy.maxdate + AND (stat.hiv_status ILIKE '%stop%' OR stat.hiv_status ILIKE '%out%' OR stat.hiv_status ILIKE '%Invalid %') + ) THEN stat.status_date + ELSE pharmacy.visit_date + END + ) AS status_date, + + stat.cause_of_death, stat.va_cause_of_death + FROM + ( + SELECT + ( + CASE + WHEN hp.visit_date + hp.refill_period + INTERVAL '29 day' < '?4' THEN 'IIT' + ELSE 'Active' + END + ) status, + ( + CASE + WHEN hp.visit_date + hp.refill_period + INTERVAL '29 day' <'?4' THEN hp.visit_date + hp.refill_period + INTERVAL '29 day' + ELSE hp.visit_date + END + ) AS visit_date, + hp.person_uuid, MAXDATE + FROM + hiv_art_pharmacy hp + INNER JOIN ( + SELECT hap.person_uuid, hap.visit_date AS MAXDATE, ROW_NUMBER() OVER (PARTITION BY hap.person_uuid ORDER BY hap.visit_date DESC) as rnkkk3 + FROM public.hiv_art_pharmacy hap + INNER JOIN public.hiv_art_pharmacy_regimens pr + ON pr.art_pharmacy_id = hap.id + INNER JOIN hiv_enrollment h ON h.person_uuid = hap.person_uuid AND h.archived = 0 + INNER JOIN public.hiv_regimen r on r.id = pr.regimens_id + INNER JOIN public.hiv_regimen_type rt on rt.id = r.regimen_type_id + WHERE r.regimen_type_id in (1,2,3,4,14) + AND hap.archived = 0 + AND hap.visit_date < '?4' + ) MAX ON MAX.MAXDATE = hp.visit_date AND MAX.person_uuid = hp.person_uuid + AND MAX.rnkkk3 = 1 + WHERE + hp.archived = 0 + AND hp.visit_date <= '?4' + ) pharmacy + + LEFT JOIN ( + SELECT + hst.hiv_status, + hst.person_id, + hst.cause_of_death, + hst.va_cause_of_death, + hst.status_date + FROM + ( + SELECT * FROM (SELECT DISTINCT (person_id) person_id, status_date, cause_of_death,va_cause_of_death, + hiv_status, ROW_NUMBER() OVER (PARTITION BY person_id ORDER BY status_date DESC) + FROM hiv_status_tracker WHERE archived=0 AND status_date <='?4' )s + WHERE s.row_number=1 + ) hst + INNER JOIN hiv_enrollment he ON he.person_uuid = hst.person_id + WHERE hst.status_date <='?4' + ) stat ON stat.person_id = pharmacy.person_uuid + ) + SELECT + ahd.state AS "State", + ahd.lga AS "LGA", + ahd.facilityName AS "Facility Name", + ahd.datimId AS "Facility Id (Datim)", + ahd.PersonUuid AS "Patient Identifier", + ahd.hospitalNumber AS "Hospital Number", + ahd.sex AS "Sex", + ahd.dateOfBirth AS "Date Of Birth (yyyy-mm-dd)", + ahd.age AS "Age", + ahd.body_weight AS "Current Weight", + ahd.Date_of_HIV_diagnosis AS "Date of HIV diagnosis", + ahd.hivEnrollmentDate AS "ART start date", + (CASE + WHEN previous.status ILIKE '%DEATH%' THEN 'DEATH' + WHEN previous.status ILIKE '%out%' THEN 'TRANSFER OUT' + WHEN previous.status ILIKE '%Died%' THEN 'DEATH' + WHEN previous.status ILIKE '%NON_ART%' THEN 'NON ART' + WHEN previous.status ILIKE '%invalid%' THEN 'INVALID' + ELSE previous.status + END) AS "Previous ART Status", + previous.status_date AS "Date of Previous ART Status", + (CASE + WHEN currentStatus.status ILIKE '%DEATH%' THEN 'DEATH' + WHEN currentStatus.status ILIKE '%out%' THEN 'TRANSFER OUT' + WHEN currentStatus.status ILIKE '%Died%' THEN 'DEATH' + WHEN currentStatus.status ILIKE '%NON_ART%' THEN 'NON ART' + WHEN currentStatus.status ILIKE '%invalid%' THEN 'INVALID' + WHEN (previous.status ILIKE '%IIT%' OR previous.status ILIKE '%stop%' ) AND (currentStatus.status ILIKE '%ACTIVE%') THEN 'Active Restart' + ELSE currentStatus.status + END) AS "Current Status", + currentStatus.status_date AS "Current Status Date", + vl_result.currentViralLoad AS "Current Viral Load", + vl_result.dateOfCurrentViralLoad AS "Date of Current Viral Load Result", + vl_result.viralLoadIndication AS "Viral Load Indication", + eac.dateOfRepeatViralLoadEACSampleCollection AS "Date of Repeat Viral Load - Post EAC VL Sample collected (yyyy-mm-dd)", + eac.repeatViralLoadResult "Repeat Viral load result (c/ml)- POST EAC", + eac.DateOfRepeatViralLoadResult AS "Date of Repeat Viral load result- POST EAC VL", + (CASE + WHEN (currentStatus.status = 'Active' AND ArvInterval <= 6) THEN 'Newly Diagnosed Client' + WHEN ((currentStatus.status = 'Active' OR (previous.status ILIKE '%IIT%' OR previous.status ILIKE '%stop%' ) AND (currentStatus.status ILIKE '%ACTIVE%')) AND ahd.age < 5 ) THEN 'PLHIV <5 years' + WHEN ((previous.status ILIKE '%IIT%' OR previous.status ILIKE '%stop%' ) AND (currentStatus.status ILIKE '%ACTIVE%')) THEN 'Restarted on ART after Interruption' + WHEN ((eac.dateOfRepeatViralLoadEACSampleCollection > vl_result.dateOfCurrentViralLoadSample) AND currentStatus.status = 'Active' AND ArvInterval > 6 AND ahd.age > 5 AND (vl_result.currentViralLoad ~ '^\d+$' AND CAST(vl_result.currentViralLoad AS INT) >= 1000) AND eac.repeatViralLoadResult ~ '^\d+$' AND CAST(eac.repeatViralLoadResult AS INT) >= 1000 AND ((EXTRACT(YEAR FROM AGE(vl_result.dateOfCurrentViralLoadSample, ahd.hivEnrollmentDate)) * 12) + EXTRACT(MONTH FROM AGE(vl_result.dateOfCurrentViralLoadSample, ahd.hivEnrollmentDate))> 3) ) THEN 'Unsuppressed client post EAC' + WHEN ((vl_result.currentViralLoad ~ '^\d+$' AND CAST(vl_result.currentViralLoad AS INT) BETWEEN 50 AND 999) AND ahd.age < 5 AND ArvInterval > 6 AND currentStatus.status = 'Active') THEN 'Persistent low level viraemia' + END) "Category", + ahd.visit_date AS "Date of last visit", + ahd.staging AS "WHO Staging", + ahd.diseaseCondition AS "Disease Conditions", + ahd.preventingSymptoms AS "Presenting symptoms at screening", + ahd.ahdStatus AS "AHD Status", + last_cd4.lastCd4Count AS "Visitect CD4 Count", + last_cd4.dateOfLastCd4Count AS "Date of CD4 Count", + cd4Type.cd4_type AS "CD4 type", + lastCrytococalAntigen.lastCrytococalAntigen AS "Cryptococcal Antigen", + lastCrytococalAntigen.dateOfLastCrytococalAntigen AS "Date of Cryptococcal Antigen", + lastLfLam.lastLfLam AS "LF LAM", + lastLfLam.dateOfLastLfLam AS "Date of LF LAM", + lastSerumCrAg.lastSerumCrAg AS "Serum crAg", + lastSerumCrAg.dateOfLastSerumCrAg AS "Date of Serum crAg", + lastCSFCrAg.lastCSFCrAg AS "CSF crAg", + lastCSFCrAg.dateOfLastCSFCrAg AS "Date of CSF crAg", + ahd.treatmentDate AS "Treatment Date" + FROM + ahd + LEFT JOIN + current_vl_result vl_result ON ahd.PersonUuid = vl_result.person_uuid130 + LEFT JOIN + last_cd4 ON last_cd4.person_uuid = ahd.PersonUuid + LEFT JOIN + lastCrytococalAntigen ON lastCrytococalAntigen.personuuid12 = ahd.PersonUuid + LEFT JOIN + lastSerumCrAg ON lastSerumCrAg.person_uuid = ahd.PersonUuid + LEFT JOIN + lastCSFCrAg ON lastCSFCrAg.person_uuid = ahd.PersonUuid + LEFT JOIN + lastVisitect ON lastVisitect.person_uuid = ahd.PersonUuid + LEFT JOIN + lastLfLam ON lastLfLam.person_uuid = ahd.PersonUuid + LEFT JOIN + eac ON eac.personUuid = ahd.PersonUuid + LEFT JOIN + previous ON previous.prePersonUuid = ahd.PersonUuid + LEFT JOIN + currentStatus ON currentStatus.prePersonUuid = ahd.PersonUuid + LEFT JOIN + cd4Type ON cd4Type.person_uuid = ahd.PersonUuid + LEFT JOIN + viralLoad ON viralLoad.person_uuid = ahd.PersonUuid + WHERE + CASE + WHEN (currentStatus.status = 'Active' AND ArvInterval <= 6) THEN 'Newly Diagnosed Client' + WHEN ((currentStatus.status = 'Active' OR (previous.status ILIKE '%IIT%' OR previous.status ILIKE '%stop%' ) AND (currentStatus.status ILIKE '%ACTIVE%')) AND ahd.age < 5 ) THEN 'PLHIV <5 years' + WHEN ((previous.status ILIKE '%IIT%' OR previous.status ILIKE '%stop%' ) AND (currentStatus.status ILIKE '%ACTIVE%')) THEN 'Restarted on ART after Interruption' + WHEN ((eac.dateOfRepeatViralLoadEACSampleCollection > vl_result.dateOfCurrentViralLoadSample) AND currentStatus.status = 'Active' AND ArvInterval > 6 AND ahd.age > 5 AND (vl_result.currentViralLoad ~ '^\d+$' AND CAST(vl_result.currentViralLoad AS INT) >= 1000) AND eac.repeatViralLoadResult ~ '^\d+$' AND CAST(eac.repeatViralLoadResult AS INT) >= 1000 AND ((EXTRACT(YEAR FROM AGE(vl_result.dateOfCurrentViralLoadSample, ahd.hivEnrollmentDate)) * 12) + EXTRACT(MONTH FROM AGE(vl_result.dateOfCurrentViralLoadSample, ahd.hivEnrollmentDate))> 3) ) THEN 'Unsuppressed client post EAC' + WHEN ((vl_result.currentViralLoad ~ '^\d+$' AND CAST(vl_result.currentViralLoad AS INT) BETWEEN 50 AND 999) AND ahd.age < 5 AND ArvInterval > 6 AND currentStatus.status = 'Active') THEN 'Persistent low level viraemia' + END != '' longitudinal-prep-query-name: longitudinal - longitudinal-prep-query: SELECT longitudinal.facility_id AS "Facility Id", longitudinal.facilityname AS "Facility Name", longitudinal.datimid AS "DATIM Id", - longitudinal.personuuid AS "Patient Identifier", longitudinal.hospitalNumber AS "Hospital Number", - longitudinal.sex AS "Sex",longitudinal.targetgroup AS "Target Group",longitudinal.age AS "Age", longitudinal.dateofbirth AS "Date Of Birth (yyyy-mm-dd)", + longitudinal-prep-query: SELECT longitudinal.state AS "State", longitudinal.lga AS "LGA", longitudinal.facility_id AS "Facility Id", longitudinal.facilityname AS "Facility Name", longitudinal.datimid AS "DATIM Id", + longitudinal.personuuid AS "Patient Identifier", longitudinal.hospitalNumber AS "Hospital Number", + longitudinal.sex AS "Sex",longitudinal.age AS "Age", longitudinal.dateofbirth AS "Date Of Birth (yyyy-mm-dd)", longitudinal.maritalstatus AS "Marital Status", longitudinal.pregnancyStatus AS "Pregnancy Status", - longitudinal.state AS "State", longitudinal.lga AS "LGA", longitudinal.residentiallga AS "LGA of Residence", longitudinal.residentialstate AS "State Of Residence", - longitudinal.education AS "Education", longitudinal.occupation AS "Occupation", longitudinal.clientWeight AS "Weight", longitudinal.clientHeight AS "Height", + longitudinal.education AS "Education", longitudinal.occupation AS "Occupation", longitudinal.dateScreenedForPrep AS "Date Screened for PrEP", longitudinal.eligibleForPrep AS "Eligible for PrEP", longitudinal.offeredPrep AS "Offered PrEP", longitudinal.willingCommencedPrep AS "Willing to Commence PREP", longitudinal.acceptedToCommencedPrep AS "Accepted to Commence PrEP", longitudinal.reasonsForDecliningPrep AS "Reasons for Declining PrEP",longitudinal.clientWeight AS "Weight", longitudinal.clientHeight AS "Height", longitudinal.pulse AS "Pulse", longitudinal.temperature AS "Temperature", longitudinal.respiratory_rate AS "Respiratory Rate", - longitudinal.systolicBP AS "Systolic BP", longitudinal.diastolicBP AS "diastolic BP", longitudinal.datePrepGiven AS "Date Prep Given", - longitudinal.prepType AS "PrEP Type", longitudinal.regimenName AS "PrEP Regimen", longitudinal.regimenDuration AS "Regimen Duration", longitudinal.otherDrugs AS "Other Drugs", - longitudinal.adherenceLevel AS "Adherence Level", longitudinal.nextAppointment AS "Next Appointment", longitudinal.risk_reduction_services AS "Risk Reduction Services", + longitudinal.systolicBP AS "Systolic BP", longitudinal.diastolicBP AS "diastolic BP", longitudinal.drugHistory AS "History of Drug-Drug Interactions",longitudinal.populationType AS "Population Type", longitudinal.visitType AS "Visit Type", longitudinal.datePrepGiven AS "Date Prep Given", + longitudinal.prepType AS "PrEP Type", longitudinal.regimenName AS "PrEP Regimen", longitudinal.regimenDuration AS "Regimen Duration / Days of Refill", longitudinal.otherDrugs AS "Other Drugs", + longitudinal.adherenceLevel AS "Adherence Level", longitudinal.nextAppointment AS "Next Appointment", longitudinal.riskReductionService AS "Risk Reduction Services", longitudinal.notedSideEffects AS "Noted Side Effects", longitudinal.hepatitisTestDate AS "Date of Hepatitis Test", longitudinal.hepatitisResult AS "Hepatitis Result", - longitudinal.syphilisTestDate AS "Date ot Syphilis Test", longitudinal.syphilisResult AS "Syphilis Result", longitudinal.datePrepCom AS "Date of PrEP commencement", longitudinal.hivTestResult AS "HIV Test Result", - longitudinal.dateSti AS "Date of Syndromic STI", longitudinal.syndromicStiScreening AS "Syndromic STI Screening", longitudinal.altTestDate AS "Date of ALT", longitudinal.altTestResult AS "ALT Result", + longitudinal.syphilisTestDate AS "Date ot Syphilis Test", longitudinal.syphilisResult AS "Syphilis Result", longitudinal.hivTestDate AS "Date of HIV Test", longitudinal.hivTestResult AS "HIV Test Result", + longitudinal.dateSti AS "Date of Syndromic STI", longitudinal.syndromicStiScreening AS "Syndromic STI Screening", longitudinal.dateOfLiverFunctionResult AS "Date of Liver Function Test", longitudinal.liverFunctionResult AS "Liver Function Test Result", longitudinal.hbsAgTestDate AS "Date of HBsAG", longitudinal.hbsAgResult AS "HBsAG Result", longitudinal.hbpcvTestDate AS "Date of HB/PCV", longitudinal.hbpcvResult AS "HB/PCV Result", - longitudinal.wbcTestDate AS "Date of WBC", longitudinal.wbcResult AS "WBC Result", longitudinal.currentUrinalysis AS "Current Urinalysis", longitudinal.currentUrinalysisDate AS "Date of Current Urinalysis", longitudinal.interruptionType AS "PrEP Discontinuation Type", longitudinal.reasonStopped AS "Reasons for discontinuation/Stopped", - longitudinal.interruptionDate AS "Date of Discontinuation/stopped", longitudinal.hivEnrollmentDate AS "Date Of HIV Enrollment (yyyy-mm-dd)", longitudinal.otherTestResult AS "Other Tests Done", longitudinal.otherTestDate AS "Date of Other test Done", longitudinal.status AS "Status" + longitudinal.wbcTestDate AS "Date of WBC", longitudinal.wbcResult AS "WBC Result", longitudinal.currentUrinalysis AS "Urinalysis", longitudinal.currentUrinalysisDate AS "Date of Urinalysis", longitudinal.astTestDate AS "Date of Current AST", longitudinal.astResult AS "Current AST",longitudinal.creatineTestDate AS "Date of Current Creatinine", longitudinal.creatineResult AS "Current Creatinine", longitudinal.chestXrayTestDate AS "Date of Current Chest Xray", longitudinal.chestXrayResult AS "Current Chest Xray", longitudinal.lipidTestDate AS "Date of Current Lipid Profile", longitudinal.lipidResult AS "Current Lipid Profile", longitudinal.interruptionType AS "PrEP Discontinuation Type", longitudinal.reasonStopped AS "Reasons for discontinuation/Stopped", + longitudinal.interruptionDate AS "Date of Discontinuation/stopped", longitudinal.hivEnrollmentDate AS "Date Of HIV Enrollment (yyyy-mm-dd)", longitudinal.otherTestResult AS "Other Tests Done", longitudinal.otherTestDate AS "Date of Other test Done", longitudinal.status AS "Status", longitudinal.evenDate AS "Date of Adverse Events", longitudinal.eventDescription AS "Adverse Events", longitudinal.notes AS "Notes" FROM ( SELECT DISTINCT ON (clinic.uuid) p.uuid AS PersonUuid, p.id, p.uuid,p.hospital_number as hospitalNumber, INITCAP(p.surname) AS surname, INITCAP(p.first_name) as firstName, he.date_of_registration AS hivEnrollmentDate,p.facility_id, - EXTRACT(YEAR from AGE(NOW(), date_of_birth)) as age, + EXTRACT(YEAR from AGE(CAST('?3' AS DATE), date_of_birth)) as age, p.other_name as otherName, p.sex as sex, p.date_of_birth as dateOfBirth, p.date_of_registration as dateOfRegistration, p.marital_status->>'display' as maritalStatus, education->>'display' as education, p.employment_status->>'display' as occupation, facility.name as facilityName, facility_lga.name as lga, facility_state.name as state, boui.code as datimId, (SELECT name FROM base_organisation_unit WHERE id = CAST(NULLIF(p.address->'address'->0 ->'stateId' ->> 0,'') AS BIGINT)) as residentialState, - (SELECT name FROM base_organisation_unit WHERE id = CAST(CASE WHEN p.address->'address'->0->'district'->>0 ~ '^\\d+$' THEN NULLIF(p.address->'address'->0->'district'->>0, '') ELSE NULL END AS BIGINT)) AS residentialLga, + (SELECT name FROM base_organisation_unit WHERE id = CAST(CASE WHEN p.address->'address'->0->'district'->>0 ~ '^[0-9\\\\.]+$' THEN NULLIF(p.address->'address'->0->'district'->>0, '') ELSE NULL END AS BIGINT)) AS residentialLga, r.address as address, (CASE WHEN contact_point->'contactPoint'->0->>'type'='phone' THEN contact_point->'contactPoint'->0->>'value' ELSE null END) AS phone, clinic.uuid, clinic.encounter_date, (SELECT display FROM base_application_codeset where code = baseline_reg.prep_type) AS prepType, @@ -790,28 +1603,38 @@ query: CAST(clinic.encounter_date AS TEXT) AS DateOfLastPickup, clinic.systolic AS systolicBP, clinic.diastolic AS diastolicBP, - clinic.weight AS clientWeight, - clinic.height AS clientHeight, + clinic.weight AS clientWeight, clinic.history_of_drug_to_drug_interaction AS historyOfDrug, + clinic.height AS clientHeight, clinic.liverFunctionResult, clinic.date_of_liver_function_test_results AS dateOfLiverFunctionResult, clinic.urinalysis->>'result' AS currentUrinalysis, - CAST(clinic.urinalysis->>'testDate' AS text) AS currentUrinalysisDate, + CAST(NULLIF(clinic.urinalysis->>'testDate', '') AS DATE) AS currentUrinalysisDate, clinic.encounter_date AS DateOfCurrentHIVStatus, (SELECT display FROM base_application_codeset WHERE code = clinic.hiv_test_result) AS hivTestResult, COALESCE(prepe.date_started, date_enrolled) AS datePrepCom, (CASE WHEN p.sex='Male' THEN NULL - WHEN clinic.pregnant IS NOT NULL AND clinic.pregnant='true' THEN (SELECT display FROM base_application_codeset WHERE code = clinic.pregnant) + WHEN clinic.pregnant IS NOT NULL AND clinic.pregnant='true' THEN 'Pregnant' + WHEN clinic.pregnant IS NOT NULL AND clinic.pregnant='PREGANACY_STATUS_PREGNANT' THEN (SELECT display FROM base_application_codeset WHERE code = clinic.pregnant) + WHEN clinic.pregnant IS NOT NULL AND clinic.pregnant='PREGANACY_STATUS_BREASTFEEDING' THEN (SELECT display FROM base_application_codeset WHERE code = clinic.pregnant) + WHEN clinic.pregnant IS NOT NULL AND clinic.pregnant='PREGANACY_STATUS_POST_PARTUM' THEN (SELECT display FROM base_application_codeset WHERE code = clinic.pregnant) ELSE 'Not Pregnant' END) AS pregnancyStatus, CAST(clinic.next_appointment AS TEXT) AS nextAppointment, (CASE WHEN tg.display IS NULL THEN null ELSE tg.display END) AS targetGroup, - clinic.pulse AS pulse, clinic.respiratory_rate, clinic.temperature, baseline_reg.regimen AS regimenName, CAST(clinic.duration AS TEXT) AS regimenDuration, (CASE WHEN (clinic.encounter_date + clinic.duration) > CAST (NOW() AS DATE) THEN 'Active' ELSE 'Defaulted' END) status, - (SELECT display FROM base_application_codeset where code = clinic.adherence_level) AS adherenceLevel, CAST(COALESCE(clinic.date_prep_given, clinic.encounter_date) AS TEXT) AS datePrepGiven, clinic.risk_reduction_services, + clinic.pulse AS pulse, clinic.respiratory_rate, clinic.temperature, baseline_reg.regimen AS regimenName, CAST(clinic.duration AS TEXT) AS regimenDuration, (CASE WHEN (clinic.encounter_date + clinic.duration) > CAST('?3' AS DATE) THEN 'Active' WHEN clinic.is_commencement is TRUE THEN 'Enrolled' ELSE 'Defaulted' END) status, + (SELECT display FROM base_application_codeset where code = clinic.adherence_level) AS adherenceLevel, CAST(COALESCE(clinic.date_prep_given, clinic.encounter_date) AS TEXT) AS datePrepGiven, (SELECT display FROM base_application_codeset where id = CASE WHEN clinic.risk_reduction_services ~ '^[0-9]+$' THEN CAST(clinic.risk_reduction_services AS INTEGER) ELSE 0 END) AS riskReductionService, (SELECT display FROM base_application_codeset where code = clinic.noted_side_effects) AS notedSideEffects, clinic.syphilis->>'testDate' AS syphilisTestDate, clinic.syphilis->>'result' AS syphilisResult, - clinic.other_drugs AS otherDrugs, clinic.archived, - altTest.other_test_result AS altTestResult, altTest.other_test_date AS altTestDate, hbsAg.other_test_result AS hbsAgResult, hbsAg.other_test_date AS hbsAgTestDate, hbpcv.other_test_result AS hbpcvResult, hbpcv.other_test_date AS hbpcvTestDate, - wbc.other_test_result AS wbcResult, wbc.other_test_date AS wbcTestDate, CAST(otherTest.other_test_name AS TEXT) AS otherTestResult, otherTest.other_test_date AS otherTestDate, + clinic.other_drugs AS otherDrugs, clinic.hiv_test_result_date AS hivTestDate, + COALESCE (clinic.creatineResult, clinic.creatinine->>'result') AS creatineResult, + COALESCE (CAST(clinic.creatineTestDate AS DATE), CAST(NULLIF(clinic.creatinine->>'testDate', '') AS DATE)) AS creatineTestDate, clinic.altTesult, CAST(NULLIF(clinic.altTestDate, NULL) AS DATE) AS altTestDate, clinic.hbsAgResult, CAST(NULLIF(clinic.hbsAgTestDate, NULL) AS DATE) AS hbsAgTestDate, clinic.hbpcvResult, CAST(NULLIF(clinic.hbpcvTestDate, null) AS DATE) AS hbpcvTestDate, + COALESCE (clinic.urinalysiResult, clinic.urinalysis->>'result') AS urinalysiResult, COALESCE (CAST(clinic.urinalysisTestDate AS DATE), CAST(NULLIF(clinic.urinalysis->>'testDate', '') AS DATE)) AS urinalysisTestDate, + clinic.wbcResult, CAST(NULLIF(clinic.wbcTestDate, NULL) AS DATE) AS wbcTestDate, clinic.lipidResult, CAST(NULLIF(clinic.lipidTestDate, NULL) AS DATE) AS lipidTestDate, clinic.chestXrayResult, CAST(NULLIF(clinic.chestXrayTestDate, NULL) AS DATE) AS chestXrayTestDate, clinic.astResult, CAST(NULLIF(clinic.astTestDate, NULL) AS DATE) AS astTestDate, + (SELECT display from base_application_codeset where code = clinic.family_planning) AS familyPlanning, clinic.date_of_family_planning AS dateOfFamilyPlanning, + CAST(otherTest.other_test_name AS TEXT) AS otherTestResult, otherTest.other_test_date AS otherTestDate, CASE WHEN clinic.syndromic_sti_screening IS NOT NULL THEN CAST(clinic.encounter_date AS TEXT) ELSE NULL END AS dateSti, (SELECT display FROM base_application_codeset where id = CAST(clinic.syndromic_sti_screening AS BIGINT)) AS syndromicStiScreening, - clinic.hepatitis->>'testDate' AS hepatitisTestDate, + clinic.hepatitis->>'testDate' AS hepatitisTestDate, (select display from base_application_codeset where code = clinic.population_type) AS populationType, (CASE WHEN clinic.hepatitis->>'testDate' IS NOT NULL THEN clinic.hepatitis->>'result' ELSE NULL END) AS hepatitisResult, - (SELECT display FROM base_application_codeset where code = pi.interruption_type) AS interruptionType, CAST(pi.interruption_date AS TEXT) AS interruptionDate, pi.reason_stopped AS reasonStopped + (SELECT display FROM base_application_codeset where code = pi.interruption_type) AS interruptionType, CAST(pi.interruption_date AS TEXT) AS interruptionDate, pi.reason_stopped AS reasonStopped, pEligiblity.visit_date AS dateScreenedForPrep, + (SELECT display FROM base_application_codeset WHERE code = clinic.visit_type) AS visitType, (CASE WHEN pEligiblity.services_received_by_client->>'willingToCommencePrep' = 'true' THEN 'Yes' WHEN pEligiblity.services_received_by_client->>'willingToCommencePrep' = 'false' THEN 'No' ELSE null END) AS willingCommencedPrep, (SELECT display FROM base_application_codeset where code = REPLACE(REPLACE(REPLACE(pEligiblity.services_received_by_client->>'reasonsForDecline', '[',''),']',''),'"','')) AS reasonsForDecliningPrep, + (CASE WHEN hc.hiv_test_result = 'Positive' THEN 'No' WHEN hc.prep_offered IS true THEN 'Yes' ELSE 'No' END) AS offeredPrep, (CASE WHEN hc.hiv_test_result = 'Positive' THEN 'No' WHEN hc.prep_accepted IS true THEN 'Yes' ELSE 'No' END) AS acceptedToCommencedPrep, + adr.adverse_effect->>'eventDescription' AS eventDescription, adr.report_date AS evenDate, '' AS notes, (CASE WHEN hc.hiv_test_result = 'Negative' OR pEligiblity.score = 1 THEN 'Yes' ELSE 'No' END) AS eligibleForPrep, (SELECT display FROM base_application_codeset where code = clinic.history_of_drug_to_drug_interaction) AS drugHistory , CASE WHEN clinic.visit_type = 'PREP_VISIT_TYPE_METHOD_SWITCH' THEN (select display from base_application_codeset where code = clinic.prep_type) ELSE null END AS methodSwitch FROM patient_person p INNER JOIN ( SELECT * FROM (SELECT p.id, REPLACE(REPLACE(REPLACE(REPLACE(REPLACE(CAST(address_object->>'line' AS text), '"', ''), ']', ''), '[', ''), 'null',''), '\\\\\\\', '') AS address, @@ -833,77 +1656,114 @@ query: LEFT JOIN base_application_codeset tg ON tg.code = penrol.target_group LEFT JOIN ( SELECT *, + currentCreatine.result AS creatineResult,currentCreatine.test_date AS creatineTestDate, currentALt.result AS altTesult, currentALt.test_date AS altTestDate, currentHbsAg.result AS hbsAgResult, currentHbsAg.test_date AS hbsAgTestDate, + currentHbpcv.result AS hbpcvResult, currentHbpcv.test_date AS hbpcvTestDate, currentUrinalysis.result AS urinalysiResult, currentUrinalysis.test_date AS urinalysisTestDate, currentWbc.result AS wbcResult, currentWbc.test_date AS wbcTestDate, + currentLipidProfile.result AS lipidResult, currentLipidProfile.test_date AS lipidTestDate, currentChestXray.result AS chestXrayResult, currentChestXray.test_date AS chestXrayTestDate, currentAst.result AS astResult, currentAst.test_date AS astTestDate, + liverResult.liverFunctionResult AS liverResultTest, row_number () over (partition by person_uuid order by encounter_date desc) as rnk FROM prep_clinic pc - where pc.archived = 0 + LEFT JOIN LATERAL ( + SELECT STRING_AGG((SELECT display FROM base_application_codeset WHERE code = liverResult), ', ') AS liverFunctionResult + FROM jsonb_array_elements_text(pc.liver_function_test_results) AS liverResult + ) liverResult ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name,arr.object->>'result' AS result,arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_CREATININE%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_CREATININE%' + LIMIT 1 + ) currentCreatine ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name,arr.object->>'result' AS result,arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_ALT%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_ALT%' + LIMIT 1 + ) currentALt ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_HBSAG%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_HBSAG%' + LIMIT 1 + ) currentHbsAg ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_HB_PCV%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_HB_PCV%' + LIMIT 1 + ) currentHbpcv ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_URINALYSIS%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_URINALYSIS%' + LIMIT 1 + ) currentUrinalysis ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_WBC_+_DIFF%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_WBC_+_DIFF%' + LIMIT 1 + ) currentWbc ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_LIPID_PROFILE%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_LIPID_PROFILE%' + LIMIT 1 + ) currentLipidProfile ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_CHEST_XRAY_%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_CHEST_XRAY_%' + LIMIT 1 + ) currentChestXray ON TRUE + LEFT JOIN LATERAL ( + SELECT arr.object->>'name' AS other_test_name, arr.object->>'result' AS result, arr.object->>'testDate' AS test_date + FROM jsonb_array_elements(pc.other_tests_done) arr(object) + WHERE arr.object->>'otherTestName' ILIKE '%PREP_OTHER_TEST_AST%' OR arr.object->>'otherTestsDone' ILIKE '%PREP_OTHER_TEST_AST%' + LIMIT 1 + ) currentAst ON TRUE + where pc.archived = 0 AND pc.is_commencement is false + ORDER BY pc.person_uuid, pc.encounter_date DESC ) clinic ON clinic.person_uuid = p.uuid LEFT JOIN ( - SELECT - arr.object->>'result' AS other_test_result, arr.object->>'name' AS other_test_name, arr.object->>'testDate' AS other_test_date, person_uuid, uuid - FROM - prep_clinic pc - CROSS JOIN LATERAL - jsonb_array_elements(other_tests_done) WITH ORDINALITY arr(object, position) - WHERE other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_ALT' - ) altTest ON altTest.uuid = clinic.uuid - LEFT JOIN ( - SELECT - arr.object->>'result' AS other_test_result, arr.object->>'name' AS other_test_name, arr.object->>'testDate' AS other_test_date, person_uuid, uuid - FROM - prep_clinic pc - CROSS JOIN LATERAL - jsonb_array_elements(other_tests_done) WITH ORDINALITY arr(object, position) - WHERE other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_HBSAG' - ) hbsAg ON hbsAg.uuid = clinic.uuid - LEFT JOIN ( - SELECT - arr.object->>'result' AS other_test_result, arr.object->>'name' AS other_test_name, arr.object->>'testDate' AS other_test_date, person_uuid, uuid - FROM - prep_clinic pc - CROSS JOIN LATERAL - jsonb_array_elements(other_tests_done) WITH ORDINALITY arr(object, position) - WHERE other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_HB_PCV' - ) hbpcv ON hbpcv.uuid = clinic.uuid - LEFT JOIN ( - SELECT - arr.object->>'result' AS other_test_result, arr.object->>'name' AS other_test_name, arr.object->>'testDate' AS other_test_date, person_uuid, uuid - FROM - prep_clinic pc - CROSS JOIN LATERAL - jsonb_array_elements(other_tests_done) WITH ORDINALITY arr(object, position) - WHERE other_tests_done is not null and arr.object->>'name' = 'PREP_OTHER_TEST_WBC_+_DIFF' - ) wbc ON wbc.uuid =clinic.uuid - LEFT JOIN ( SELECT STRING_AGG(arr.object->>'result', ', ') AS other_test_result, STRING_AGG((SELECT display FROM base_application_codeset WHERE code = arr.object->>'name'), ', ') AS other_test_name, - arr.object->>'testDate' AS other_test_date, pc.person_uuid, pc.uuid FROM prep_clinic pc CROSS JOIN LATERAL jsonb_array_elements(other_tests_done) WITH ORDINALITY arr(object, position) WHERE other_tests_done IS NOT NULL AND arr.object->>'name' NOT IN ('PREP_OTHER_TEST_WBC_+_DIFF', 'PREP_OTHER_TEST_HB_PCV', 'PREP_OTHER_TEST_HBSAG', 'PREP_OTHER_TEST_ALT') GROUP BY pc.person_uuid, pc.uuid, arr.object->>'testDate' + arr.object->>'testDate' AS other_test_date, pc.person_uuid, pc.uuid FROM prep_clinic pc CROSS JOIN LATERAL jsonb_array_elements(other_tests_done) WITH ORDINALITY arr(object, position) WHERE other_tests_done IS NOT NULL AND arr.object->>'name' NOT IN ('PREP_OTHER_TEST_WBC_+_DIFF', 'PREP_OTHER_TEST_HB_PCV', 'PREP_OTHER_TEST_HBSAG', 'PREP_OTHER_TEST_ALT') AND arr.object->>'name' != '' AND arr.object->>'name' IS NOT NULL GROUP BY pc.person_uuid, pc.uuid, arr.object->>'testDate' ) otherTest ON otherTest.uuid =clinic.uuid LEFT JOIN prep_interruption pi ON pi.person_uuid = p.uuid LEFT JOIN prep_regimen baseline_reg ON baseline_reg.id = clinic.regimen_id - WHERE p.archived = 0 AND clinic.uuid <> '' AND p.facility_id=?1 - AND clinic.encounter_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) - ) longitudinal + LEFT JOIN prep_eligibility pEligiblity ON pEligiblity.person_uuid = p.uuid + LEFT JOIN adr_table adr ON adr.patient_uuid = p.uuid + LEFT JOIN hts_client hc ON hc.person_uuid = p.uuid + WHERE p.archived = 0 AND clinic.uuid <> '' AND p.facility_id=?1 + AND clinic.encounter_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) longitudinal ORDER BY longitudinal.personuuid, longitudinal.datePrepGiven DESC mhpss-query-name: mhpss - mhpss-query: SELECT mhpss.facilityName AS "Facility", mhpss.entryPoint AS "Entry Point", mhpss.patientId AS "Patient ID", mhpss.screenDate AS "Screen Date (yyyy-MM-dd)", mhpss.sex AS "Sex", mhpss.age AS "Age", mhpss.targetGroup AS "Target Group", mhpss.currTreat AS "Current Treatment Status", - mhpss.hivStatus AS "HIV Status", mhpss.phyCo AS "Signs Of Pyschosocio Distress", mhpss.domainScreen AS "Domain Screened Positive", mhpss.atRisk AS "At Risk to Self or Others", mhpss.screenedBy AS "Screened By", mhpss.provFirst AS "Provided first line Intervention", mhpss.intProvided AS "Intervention provided", - mhpss.confirmEncounterDate AS "Date provided with first line care", mhpss.referal AS "Referrals", mhpss.referTo AS "Referred to (name of hospital, unit, or position)", mhpss.mentalHealth AS "Mental Health Assessment Start Date (yyyy-MM-dd)", mhpss.riskConfirmed AS "Risk Confirmed", + mhpss-query: SELECT mhpss.facilityName AS "Facility", mhpss.entryPoint AS "Entry Point", mhpss.patientId AS "Patient ID", mhpss.confirmEncounterDate AS "Screen Date (yyyy-MM-dd)", mhpss.sex AS "Sex", mhpss.age AS "Age", mhpss.targetGroup AS "Target Group", mhpss.currTreat AS "Current Treatment Status", + mhpss.hivStatus AS "HIV Status", mhpss.phyCo AS "Signs Of Pyschosocial Distress", mhpss.domainScreen AS "Domain Screened Positive", mhpss.riskConfirmed AS "At Risk to Self or Others", mhpss.screenedBy AS "Screened By", mhpss.provFirst AS "Provided first line Intervention", mhpss.intProvided AS "Intervention provided", + mhpss.confirmEncounterDate AS "Date provided with first line care", mhpss.referal AS "Referrals", mhpss.referTo AS "Referred to (name of hospital, unit, or position)", mhpss.mentalHealth AS "Mental Health Assessment Start Date (yyyy-MM-dd)", mhpss.atRisk AS "Risk Confirmed", mhpss.confirmOutcome AS "Confirmation Outcome", mhpss.audit_c AS "AUDIT-C", mhpss.dast_10 AS "DAST-10", mhpss.gad_7 AS "GAD-7", mhpss.pcl_5 AS "PCL-5", mhpss.phq_9 AS "PHQ-9", mhpss.confirmed_by AS "Confirmed By", mhpss.interventions_rendered AS "Interventions prescribed", mhpss.session_modality AS "Session Modality", mhpss.firstSessionDate AS "First Session date", mhpss.noSession AS "Number of Sessions", mhpss.laSessionDate AS "Last Session date", mhpss.current_level_of_insight AS "Current Level Of Insight", mhpss.nextAppt AS "Next Appointment", mhpss.compIntDate AS "Completed intervention (date)", mhpss.referrals AS "Referrals", mhpss.refFacility AS "referral facility" FROM ( - SELECT facility.name as facilityName, p.facility_id, p.uuid AS PersonUuid, p.id, p.uuid,p.hospital_number as hospitalNumber, + SELECT DISTINCT ON (p.uuid) p.uuid AS PersonUuid, facility.name as facilityName, p.facility_id,p.hospital_number as hospitalNumber, coalesce(he.date_of_registration, he.date_started) AS hivEnrollmentDate, - EXTRACT(YEAR from AGE(NOW(), date_of_birth)) as age, (select display from base_application_codeset where id = he.entry_point_id) AS entryPoint, + EXTRACT(YEAR from AGE(CAST('?3' AS DATE), date_of_birth)) as age, (select display from base_application_codeset where id = he.entry_point_id) AS entryPoint, he.entry_point_id AS entryPoint1, COALESCE(p.hospital_number, hts.client_code, PrEP.unique_id) AS patientId, mhpssScreening.encounter_date AS encounterDate, INITCAP(p.sex) AS sex, COALESCE((select display from base_application_codeset where id = he.target_group_id), (select display from base_application_codeset where code = prEP.target_group),(select display from base_application_codeset where code = hts.target_group), '') targetGroup, COALESCE(hts.hiv_test_result, (select display from base_application_codeset where code = prEP.status), 'Positive') AS hivStatus, - CAST(ms.risks_confirmed->>0 AS VARCHAR) AS atRisk, mhpssScreening.screened_by AS screenedBy, ms.encounter_date AS confirmEncounterDate, - ms.confirmation_outcome AS confirmOutcome, ms.audit_c, ms.dast_10, ms.gad_7, ms.pcl_5, ms.phq_9, ms.confirmed_by, CAST (ms.interventions_rendered->>0 AS VARCHAR) AS interventions_rendered, - ms.session_modality, ms.current_level_of_insight, '' AS screenDate, '' AS currTreat, '' AS phyCo, '' domainScreen, '' AS provFirst, '' AS intProvided, '' AS referal, '' AS referTo, '' AS mentalHealth, '' AS riskConfirmed, '' AS firstSession, '' AS firstSessionDate, '' AS noSession, '' AS laSessionDate, '' AS nextAppt, '' AS compIntDate, '' AS referrals, '' AS refFacility, ROW_NUMBER() OVER (PARTITION BY mhpssScreening.person_uuid ORDER BY mhpssScreening.encounter_date DESC) AS rowNums + mss.risks_confirmed AS atRisk, mhpssScreening.screened_by AS screenedBy, ms.encounter_date AS confirmEncounterDate, + ms.confirmation_outcome AS confirmOutcome, ms.audit_c, ms.dast_10, ms.gad_7, ms.pcl_5, ms.phq_9, ms.confirmed_by, mss.interventions_rendered AS interventions_rendered, + ms.session_modality, ms.current_level_of_insight, '' AS screenDate, (CASE WHEN status.hiv_status ILIKE '%DEATH%' THEN 'DEATH' WHEN status.hiv_status ILIKE '%out%' THEN 'TRANSFER OUT' + WHEN status.hiv_status ILIKE '%Died%' THEN 'DEATH' + WHEN status.hiv_status ILIKE '%START%' THEN 'ACTIVE' + WHEN status.hiv_status ILIKE '%RESTART%' THEN 'ACTIVE RESTART' + WHEN status.hiv_status ILIKE '%IIT%' THEN 'IIT' + WHEN status.hiv_status ILIKE '%NON_ART%' THEN 'NON ART' + WHEN status.hiv_status ILIKE '%invalid%' THEN 'INVALID' + ELSE status.hiv_status + END) AS currTreat, mhpssScreening.recent_activity_challenge AS phyCo, '' domainScreen, '' AS provFirst, '' AS intProvided, (CASE WHEN mhpssScreening.referred IS true THEN 'Yes' ELSE 'No' END) AS referal, '' AS referTo, '' AS mentalHealth, mhpssScreening.suicidal_thoughts AS riskConfirmed, '' AS firstSession, '' AS firstSessionDate, '' AS noSession, '' AS laSessionDate, '' AS nextAppt, '' AS compIntDate, '' AS referrals, '' AS refFacility, ROW_NUMBER() OVER (PARTITION BY mhpssScreening.person_uuid ORDER BY mhpssScreening.encounter_date DESC) AS rowNums FROM mhpss_screening mhpssScreening LEFT JOIN patient_person p on p.uuid = mhpssScreening.person_uuid - LEFT JOIN base_organisation_unit facility ON facility.id=facility_id + LEFT JOIN base_organisation_unit facility ON facility.id=p.facility_id LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id - LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=facility_id AND boui.name='DATIM_ID' + LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=p.facility_id AND boui.name='DATIM_ID' LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid LEFT JOIN ( SELECT *, ROW_NUMBER() OVER (PARTITION BY mhpss_screening ORDER BY encounter_date DESC) AS rowNums FROM mhpss_confirmation @@ -912,7 +1772,356 @@ query: select * from prep_enrollment ) prEP ON p.uuid = prEP.person_uuid LEFT JOIN ( + SELECT mhpss_screening, TRIM(REPLACE(REPLACE(REPLACE(ARRAY_TO_STRING(ARRAY_agg(interventions_rendered), ','), '[', ''), ']',''), '"','')) AS interventions_rendered, TRIM(REPLACE(REPLACE(REPLACE(ARRAY_TO_STRING(ARRAY_agg(risks_confirmed), ','), '[', ''), ']',''), '"','')) AS risks_confirmed from mhpss_confirmation + GROUP BY 1 + ) mss ON mss.mhpss_screening = mhpssScreening.id + LEFT JOIN ( SELECT * from hts_client ) hts ON p.uuid = hts.person_uuid + LEFT JOIN ( + SELECT * FROM ( + SELECT + person_id, + archived, + hiv_status, + status_date, + facility_id, + ROW_NUMBER() OVER (PARTITION BY person_id ORDER BY status_date DESC) AS rnk + FROM + hiv_status_tracker + WHERE + hiv_status IS NOT NULL + AND hiv_status != '' + AND hiv_status != 'HIV_NEGATIVE' + ) currentStatus + WHERE + currentStatus.archived = 0 + AND currentStatus.hiv_status IS NOT NULL + AND currentStatus.hiv_status != '' + AND currentStatus.hiv_status != 'HIV_NEGATIVE' + AND currentStatus.facility_id = ?1 + AND currentStatus.status_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) status ON status.person_id = p.uuid AND status.rnk = 1 WHERE rowNums = 1 AND p.facility_id='?1' AND p.archived = 0 AND mhpssScreening.encounter_date BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) - ) mhpss \ No newline at end of file + ) mhpss + hts-register-query-name: hts_register + hts-register-query: SELECT hts_register.dateVisit AS "Date (DD/MM/YYYY)", hts_register.clientCode AS "Client Code", + hts_register.type_individual AS "Type Of Counseling (Individual)", hts_register.type_self_tested AS "Type Of Counseling (Individual)", + hts_register.type_group AS "Type Of Counseling (Group)", hts_register.type_couple as "Type Of Counseling (Couple)", hts_register.age_1_4_m_negative AS "Tested Negative Age Group Male (1 -4)", + hts_register.age_5_9_m_negative AS "Tested Negative Age Group Male (5 - 9)", hts_register.age_10_14_m_negative AS "Tested Negative Age Group Male (10 - 14)", + hts_register.age_15_19_m_negative AS "Tested Negative Age Group Male (15 - 19)", hts_register.age_20_24_m_negative AS "Tested Negative Age Group Male (20 - 24)", + hts_register.age_25_29_m_negative AS "Tested Negative Age Group Male (25 - 29)", hts_register.age_30_34_m_negative AS "Tested Negative Age Group Male (30 - 34)", + hts_register.age_35_39_m_negative AS "Tested Negative Age Group Male (35 - 39)", hts_register.age_40_44_m_negative AS "Tested Negative Age Group Male (40 - 44)", + hts_register.age_45_49_m_negative AS "Tested Negative Age Group Male (45 - 49)", hts_register.age_50_plus_m_negative AS "Tested Negative Age Group Male (50+)", + hts_register.age_1_4_f_negative AS "Tested Negative Age Group Female (1 - 4)", hts_register.age_5_9_f_negative AS "Tested Negative Age Group Female (5 - 9)", + hts_register.age_10_14_f_negative AS "Tested Negative Age Group Female (10 - 14)", hts_register.age_15_19_f_negative AS "Tested Negative Age Group Female (15 - 19)", + hts_register.age_20_24_f_negative AS "Tested Negative Age Group Female (20 - 24)", hts_register.age_25_29_f_negative AS "Tested Negative Age Group Female (25 - 29)", + hts_register.age_30_34_f_negative AS "Tested Negative Age Group Female (30 - 34)", hts_register.age_35_39_f_negative AS "Tested Negative Age Group Female (35 - 39)", + hts_register.age_40_44_f_negative AS "Tested Negative Age Group Female (40 - 44)", hts_register.age_45_49_f_negative AS "Tested Negative Age Group Female (45 - 49)", + hts_register.age_50_plus_f_negative AS "Tested Negative Age Group Female (50+)", hts_register.age_1_4_m_positive AS "Tested Negative Age Group Male (1 - 4)", + hts_register.age_5_9_m_positive AS "Tested Positive Age Group Male (5 - 9)", hts_register.age_10_14_m_positive AS "Tested Positive Age Group Male (10 - 14)", + hts_register.age_15_19_m_positive AS "Tested Positive Age Group Male (15 - 19)", hts_register.age_20_24_m_positive AS "Tested Positive Age Group Male (20 - 24)", + hts_register.age_25_29_m_positive AS "Tested Positive Age Group Male (25 - 29)", hts_register.age_30_34_m_positive AS "Tested Positive Age Group Male (30 - 34)", + hts_register.age_35_39_m_positive AS "Tested Positive Age Group Male (35 - 39)", hts_register.age_40_44_m_positive AS "Tested Positive Age Group Male (40 - 44)", + hts_register.age_45_49_m_positive AS "Tested Positive Age Group Male (45 - 49)", hts_register.age_50_plus_m_positive AS "Tested Positive Age Group Male (50+)", + hts_register.age_1_4_f_positive AS "Tested Positive Age Group Female (1 - 4)", hts_register.age_5_9_f_positive AS "Tested Positive Age Group Female (5 - 9)", + hts_register.age_10_14_f_positive AS "Tested Positive Age Group Female (10 - 14)", hts_register.age_15_19_f_positive AS "Tested Positive Age Group Female (15 - 19)", + hts_register.age_20_24_f_positive AS "Tested Positive Age Group Female (20 - 24)", hts_register.age_25_29_f_positive AS "Tested Positive Age Group Female (25 - 29)", + hts_register.age_30_34_f_positive AS "Tested Positive Age Group Female (30 - 34)", hts_register.age_35_39_f_positive AS "Tested Positive Age Group Female (35 - 39)", + hts_register.age_40_44_f_positive AS "Tested Positive Age Group Female (40 - 44)", hts_register.age_45_49_f_positive AS "Tested Positive Age Group Female (45 - 49)", + hts_register.age_50_plus_f_positive AS "Tested Positive Age Group Female (50+)", hts_register.prepOffered AS "Prep Offered", + hts_register.prepAccepted AS "Prep Accepted", hts_register.retested AS "Retested", + hts_register.recency_number AS "Recency Number", hts_register.recent AS "Recency Test Result With RTRI (Recent)", + hts_register.long_term AS "Recency Test Result With RTRI (Long Term)", hts_register.negative AS "Recency Test Result With RTRI (Negative)", + hts_register.invalid AS "Recency Test Result With RTRI (Invalid)", hts_register.rita_recent AS "Confirmed Recent Test Through VL Testing (Recent)", hts_register.rita_long_term AS "Confirmed Recent Test Through VL Testing (Long Term)", + hts_register.yes_tb_clinical_screening_done_score_0 AS "TB Clinical Screening Done Score 0", hts_register.yes_tb_clinical_screening_done_score_1 AS "TB Clinical Screening Done Score 1", + hts_register.no_tb_clinical_screening_done AS "TB Clinical Screening Not Done", hts_register.yes_sti_clinical_screening_done_score_0 AS "TB Clinical Screening Done Score 0", + hts_register.yes_sti_clinical_screening_done_score_1 AS "STI Clinical Screening Done Score 1", hts_register.no_sti_clinical_screening_done AS "STI Clinical Screening Not Done", + hts_register.r_syphilis AS "Syphilis Test Result (R)", hts_register.nr_syphilis AS "Syphilis Test Result (NR)", + hts_register.hep_b_neg AS "Hepatitis B Test Result Negative", hts_register.hep_b_pos AS "Hepatitis B Test Result Positive", + hts_register.hep_c_neg AS "Hepatitis B Test Result Negative", hts_register.hep_c_pos AS "Hepatitis B Test Result Positive", + hts_register.cd4_less_200 AS "CD4 (< 200)", hts_register.cd4_more_or_equal_200 AS "CD4 (>= 200)", + hts_register.offered_index_testing AS "Offered Index Testing Services", hts_register.accepted_index_testing AS "Accepted Index Testing Services" + FROM (SELECT hc.date_visit AS dateVisit, hc.client_code AS clientCode, + (CASE WHEN ts.code = 'COUNSELING_TYPE_INDIVIDUAL' THEN 'X' ELSE '' END) AS type_individual, + (CASE WHEN ts.code = 'COUNSELING_TYPE_COUPLE' THEN 'X' ELSE '' END) AS type_couple, + (CASE WHEN ts.code = 'COUNSELING_TYPE_GROUP' THEN 'X' ELSE '' END) AS type_group, + (CASE WHEN ts.code = 'COUNSELING_TYPE_PREVIOUSLY_SELF-TESTED' THEN 'X' ELSE '' END) AS type_self_tested, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 1 AND 4 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE + CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 1 AND 4 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_1_4_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 5 AND 9 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE + CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 5 AND 9 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_5_9_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 10 AND 14 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 10 AND 14 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_10_14_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 15 AND 19 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 15 AND 19 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_15_19_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 20 AND 24 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative'THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 20 AND 24 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_20_24_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 25 AND 29 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 25 AND 29 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_25_29_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 30 AND 34 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 30 AND 34 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_30_34_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 35 AND 39 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 35 AND 39 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_35_39_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 40 AND 44 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 40 AND 44 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_40_44_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 45 AND 49 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 45 AND 49 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_45_49_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) >= 50 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) >= 50 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_50_plus_m_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 1 AND 4 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 1 AND 4 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_1_4_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 5 AND 9 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 5 AND 9 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_5_9_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 10 AND 14 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 10 AND 14 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_10_14_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 15 AND 19 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 15 AND 19 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_15_19_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 20 AND 24 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative'THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 20 AND 24 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_20_24_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 25 AND 29 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 25 AND 29 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_25_29_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 30 AND 34 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 30 AND 34 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_30_34_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 35 AND 39 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 35 AND 39 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_35_39_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 40 AND 44 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 40 AND 44 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_40_44_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 45 AND 49 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 45 AND 49 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_45_49_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) >= 50 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) >= 50 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Negative' THEN 'X' ELSE '' END END AS age_50_plus_f_negative, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 1 AND 4 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 1 AND 4 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_1_4_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 5 AND 9 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 5 AND 9 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_5_9_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 10 AND 14 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 10 AND 14 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_10_14_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 15 AND 19 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 15 AND 19 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_15_19_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 20 AND 24 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive'THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 20 AND 24 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_20_24_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 25 AND 29 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 25 AND 29 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_25_29_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 30 AND 34 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 30 AND 34 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_30_34_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 35 AND 39 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 35 AND 39 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_35_39_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 40 AND 44 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 40 AND 44 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_40_44_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 45 AND 49 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 45 AND 49 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_45_49_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) >= 50 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) >= 50 AND INITCAP(pp.sex)='Male' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_50_plus_m_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 1 AND 4 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 1 AND 4 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_1_4_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 5 AND 9 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 5 AND 9 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_5_9_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 10 AND 14 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 10 AND 14 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_10_14_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 15 AND 19 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 15 AND 19 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_15_19_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 20 AND 24 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive'THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 20 AND 24 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_20_24_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 25 AND 29 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 25 AND 29 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_25_29_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 30 AND 34 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 30 AND 34 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_30_34_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 35 AND 39 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 35 AND 39 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_35_39_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 40 AND 44 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 40 AND 44 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_40_44_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) BETWEEN 45 AND 49 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) BETWEEN 45 AND 49 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_45_49_f_positive, + CASE WHEN hc.person_uuid IS NULL THEN CASE WHEN CAST(hc.extra->>'age' AS INTEGER) >= 50 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END ELSE CASE WHEN CAST(EXTRACT(YEAR FROM AGE(CAST('?3' AS DATE), pp.date_of_birth)) AS INTEGER) >= 50 AND INITCAP(pp.sex)='Female' AND hc.hiv_test_result='Positive' THEN 'X' ELSE '' END END AS age_50_plus_f_positive, + (CASE WHEN hc.prep_offered IS true THEN 'Yes' ELSE 'No' END) AS prepOffered, + (CASE WHEN hc.prep_accepted IS true THEN 'Yes' ELSE 'No' END) AS prepAccepted, + (CASE WHEN hc.previously_tested IS true THEN 'Yes' ELSE 'No' END) AS retested, hc.recency->>'rencencyId' AS recency_number, + (CASE WHEN hc.recency->>'rencencyInterpretation' IS NOT NULL AND hc.recency->>'rencencyInterpretation' ILIKE '%Recent%' THEN 'X' ELSE '' END) AS recent, + (CASE WHEN hc.recency->>'rencencyInterpretation' IS NOT NULL AND hc.recency->>'rencencyInterpretation' ILIKE '%Long%' THEN 'X' ELSE '' END) AS long_term, + (CASE WHEN hc.recency->>'rencencyInterpretation' IS NOT NULL AND hc.recency->>'rencencyInterpretation' ILIKE '%Negative%' THEN '' ELSE '' END) AS negative, + (CASE WHEN hc.recency->>'rencencyInterpretation' IS NOT NULL AND hc.recency->>'rencencyInterpretation' ILIKE '%Invalid%' THEN '' ELSE '' END) AS invalid, + (CASE WHEN hc.recency->>'finalRecencyResult' IS NOT NULL AND hc.recency->>'rencencyInterpretation' ILIKE '%Recent%' THEN 'X' ELSE '' END) AS rita_recent, + (CASE WHEN hc.recency->>'finalRecencyResult' IS NOT NULL AND hc.recency->>'rencencyInterpretation' ILIKE '%Long%' THEN 'X' ELSE '' END) AS rita_long_term, + '' AS yes_tb_clinical_screening_done_score_0, + '' AS yes_tb_clinical_screening_done_score_1, + '' AS no_tb_clinical_screening_done, + '' AS yes_sti_clinical_screening_done_score_0, + '' AS yes_sti_clinical_screening_done_score_1, + '' AS no_sti_clinical_screening_done, + '' AS r_syphilis, + '' AS nr_syphilis, + '' AS hep_b_neg, + '' AS hep_b_pos, + '' AS hep_c_neg, + '' AS hep_c_pos, + CASE WHEN (CASE WHEN hc.cd4->>'cd4Count' = 'Semi-Quantitative' THEN hc.cd4->>'cd4SemiQuantitative' WHEN hc.cd4->>'cd4Count' = 'Flow Cyteometry' THEN hc.cd4->>'cd4FlowCyteometry' ELSE NULL END) = '<200' THEN 'X' ELSE NULL END AS cd4_less_200, + CASE WHEN (CASE WHEN hc.cd4->>'cd4Count' = 'Semi-Quantitative' THEN hc.cd4->>'cd4SemiQuantitative' WHEN hc.cd4->>'cd4Count' = 'Flow Cyteometry' THEN hc.cd4->>'cd4FlowCyteometry' ELSE NULL END) = '>=200' THEN 'X' ELSE NULL END AS cd4_more_or_equal_200, + (CASE WHEN hc.index_client IS true THEN 'X' ELSE '' END) AS offered_index_testing, (CASE WHEN hc.index_client IS true THEN 'X' ELSE '' END) AS accepted_index_testing + FROM hts_client hc + LEFT JOIN base_application_codeset tg ON tg.code = hc.target_group + LEFT JOIN base_application_codeset it ON it.id = hc.relation_with_index_client + LEFT JOIN base_application_codeset rf ON rf.id = hc.referred_from + LEFT JOIN base_application_codeset ts ON ts.code = hc.testing_setting + LEFT JOIN base_application_codeset tc ON tc.id = hc.type_counseling + LEFT JOIN base_application_codeset preg ON preg.id = hc.pregnant + LEFT JOIN base_application_codeset relation ON relation.id = hc.relation_with_index_client + LEFT JOIN hts_risk_stratification hrs ON hrs.code = hc.risk_stratification_code + LEFT JOIN base_application_codeset modality_code ON modality_code.code = hrs.modality + LEFT JOIN patient_person pp ON pp.uuid = hc.person_uuid + LEFT JOIN (SELECT p.id, (jsonb_array_elements(p.address->'address')->>'city') as address + FROM patient_person p) AS result ON result.id = pp.id + LEFT JOIN base_organisation_unit facility ON facility.id = hc.facility_id + LEFT JOIN base_organisation_unit state ON state.id = facility.parent_organisation_unit_id + LEFT JOIN base_organisation_unit lga ON lga.id = state.parent_organisation_unit_id + LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id = hc.facility_id AND boui.name = 'DATIM_ID' + WHERE hc.archived = 0 + AND hc.facility_id = ?1 AND hc.date_visit BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ORDER BY hc.date_visit, hc.client_code, tg.display) hts_register + kp-prev-query-name: kpPrev + kp-prev-query: SELECT kpPrev.entryPoint AS "Entry point", kpPrev.patientId AS "Name or ID", kpPrev.facilityName AS "Facility Name", kpPrev.state AS "State", kpPrev.lga AS "LGA", kpPrev.dateServiced AS "Date service offered or received", kpPrev.age AS "Age", kpPrev.sex AS "Sex", kpPrev.tarGroup AS "Target Group", kpPrev.offeredHts AS "Offered HTS", kpPrev.affectedHts AS "Accepted HTS", kpPrev.htsResult AS "HTS Result", kpPrev.referredForArt AS "If Positive, referred for ART?", kpPrev.offeredPrep AS "Offered PrEP", kpPrev.prepAccepted AS "Accepted PrEP", kpPrev.refferedForPrep AS "Referred for PrEP", kpPrev.cdDispensed AS "Total Number of condoms dispensed", + kpPrev.lubricantDispensed AS "Total Number of lubricants dispensed", kpPrev.OralDispensed AS "HIV-ST kits dispensed", kpPrev.needleDispensed AS "Total Number of needles/syringes dispensed", kpPrev.iecMaterial AS "IEC materials/pamphlets", kpPrev.interPersonalCommunication AS "Interpersonal communications (IPC)", kpPrev.peerGroupCommunication AS "Peer group education", kpPrev.refferedForSti AS "Referred for STI", kpPrev.stiScreen AS "STI Screened", kpPrev.stiResult AS "STI screen result", kpPrev.stiTreatment AS "Type of STI Treatment", kpPrev.vaccineViralHepatitis AS "Screening for Viral Hepatitis", + kpPrev.viralHepatitisResult AS "Viral Hepatitis Screen result", kpPrev.vaccineViralHepatitis AS "Vaccination for Viral Hepatitis", kpPrev.fPlanning AS "Reproductive Health(Family planning, PMTCT)", kpPrev.medicalAssisted AS "Medication Assisted Therapy", kpPrev.typeOfMhpss AS "Type of MHPSS Provided", kpPrev.referedMhpss AS "Referal for MHPSS", kpPrev.mat AS "MAT", kpPrev.empowermentProgramReferred AS "Empowerment" , kpPrev.legalAid AS "Legal Aid", kpPrev.providedEmpowerment AS "Outreach/ Empowerment" + FROM ( + SELECT facility.name as facilityName, facility_state.name as state, facility_lga.name as lga, p.uuid AS PersonUuid, p.id, p.uuid,p.hospital_number as hospitalNumber, + coalesce(he.date_of_registration, he.date_started) AS hivEnrollmentDate, + EXTRACT(YEAR from AGE(CAST('?3' AS DATE), date_of_birth)) as age, + COALESCE(p.hospital_number, hts.client_code, PrEP.unique_id) AS patientId, + INITCAP(p.sex) AS sex, COALESCE(kp.entry_point->>'htsaccepted', kp.entry_point->>'known_postive') AS entryPoint, CAST(visit_date AS DATE) As dateServiced, (select display from base_application_codeset where code = kp.target_group) AS tarGroup, CASE WHEN hts_services->>'offered_hts' ILIKE '%1' THEN 'Yes' WHEN hts_services->>'offered_hts' ILIKE '%0' THEN 'No' ELSE hts_services->>'offered_hts' END AS offeredHts, + CASE WHEN hts_services->>'accepted_hts' ILIKE '%1' THEN 'Yes' WHEN hts_services->>'accepted_hts' ILIKE '%0' THEN 'No' ELSE hts_services->>'accepted_hts' END AS affectedHts, INITCAP(hts_services->>'hiv_test_result') AS htsResult, CASE WHEN INITCAP(hts_services->>'hiv_test_result') = 'Positive' AND hts_services->>'referred_for_art' = '1' THEN 'Yes' ELSE 'No' END AS referredForArt, (CASE WHEN prep_services->>'offered_prep' = '1' THEN 'Yes' WHEN prep_services->>'offered_prep' = '0' THEN 'No' ELSE NULL END) AS offeredPrep, (CASE WHEN prep_services->>'accepted_prep' = '1' THEN 'Yes' WHEN prep_services->>'accepted_prep' = '0' THEN 'No' ELSE Null END) AS prepAccepted, (CASE WHEN prep_services->>'referred_for_prep' = '1' THEN 'Yes' WHEN prep_services->>'referred_for_prep' = '0' THEN 'No' ELSE null END) AS refferedForPrep, + commodity_services->>'how_many_condom_dispensed' AS cdDispensed, commodity_services->>'how_many_lubricants_dispensed' AS lubricantDispensed, commodity_services->>'how_many_oral_quick_dispensed' AS OralDispensed, + commodity_services->>'how_many_new_needle_dispensed' AS needleDispensed, hiv_educational_services->>'iecMaterial' AS iecMaterial, hiv_educational_services->>'peerGroupCommunication' AS peerGroupCommunication, + hiv_educational_services->>'interPersonalCommunication' AS interPersonalCommunication, CASE WHEN biomedical_services->>'sti_screening' ILIKE '%yes%' THEN 'Yes' WHEN biomedical_services->>'sti_screening' ILIKE '%no%' THEN 'No' END AS stiScreen, biomedical_services->>'sti_screening_result' AS stiResult, (select display from base_application_codeset where code = biomedical_services->>'type_of_sti_treatment') AS stiTreatment, + biomedical_services->>'vaccination_for_viral_hepatitis' AS vaccineViralHepatitis, biomedical_services->>'viral_hepatitis_screen_result' AS viralHepatitisResult, '' AS fPlanning, CASE WHEN biomedical_services->>'medical_assisted_therapy_for_six_months' ILIKE '%yes%' THEN 'Yes' WHEN biomedical_services->>'medical_assisted_therapy_for_six_months' ILIKE '%no%' THEN 'No' END AS medicalAssisted, CASE WHEN biomedical_services->>'sti_treatment' ILIKE '%yes%' THEN 'Yes' WHEN biomedical_services->>'sti_treatment' ILIKE '%no%' THEN 'No' END AS refferedForSti, + (select display from base_application_codeset where code = biomedical_services->>'type_of_mhpss') AS typeOfMhpss, '' AS referedMhpss, '' AS mat, structural_services->>'empowermentProgramReferred' AS empowermentProgramReferred, CASE WHEN structural_services->>'legalAidServices' ILIKE '%yes%' THEN 'Yes' WHEN structural_services->>'legalAidServices' ILIKE '%no%' THEN 'No' END AS legalAid, CASE WHEN structural_services->>'providedEmpowerment' ILIKE '%yes%' THEN 'Yes' WHEN structural_services->>'providedEmpowerment' ILIKE '%no%' THEN 'No' END AS providedEmpowerment + FROM patient_person p + LEFT JOIN base_organisation_unit facility ON facility.id=facility_id + LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id + LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id + LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=facility_id AND boui.name='DATIM_ID' + LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid + LEFT JOIN prep_enrollment PrEP ON PrEP.person_uuid = p.uuid + LEFT JOIN hts_client hts ON hts.person_uuid = p.uuid + INNER JOIN kp_prev kp on kp.person_uuid = p.uuid + WHERE kp.facility_id='?1' AND p.archived = 0 AND CAST(kp.visit_date AS DATE) BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) kpPrev + hivst-query-name: hivst + hivst-query: SELECT hivst.state AS "State", hivst.lga AS "LGA", hivst.facilityName AS "Facility", hivst.datimId AS "Facility Id (Datim)", hivst.serviceDeliveryPoint AS "Service Delivery Point", hivst.visitDate AS "Date", hivst.collectorCode AS "Collector's Client Code", hivst.collectorCodeStatus AS "Collector's HIV Status", hivst.entryPoint AS "entry point", hivst.targetGroup AS "target group", hivst.userClientCode AS "User client code", hivst.contactAddress AS "Contact Address", hivst.phoneNumber AS "Phone Number", hivst.nameOfTestKit AS "Name of Test Kit", + hivst.lotNumber AS "Test Kit Lot Number", hivst.expiryDate AS "Test Kit Expiry Date", hivst.userMaritalStatus AS "User Marital Status", hivst.userCategory AS "Intended User Category", hivst.userSex AS "Sex", hivst.userAge AS "Age of User", hivst.everUsedHivstKit AS "Have you every used HIVST kits?", hivst.typeOfHivstKit AS "Test kit used", hivst.typeOfHivst AS "Type of HIVST", hivst.followUp AS "Follow-up outcome", hivst.resultOfHivstTest AS "Test Result", hivst.referredFor AS "Referred Services", hivst.facilityRefered AS "Referred for Name of facility refrred to", hivst.dateReferred AS "Date of Referral", hivst.receivedConfirmatoryHts AS "Received confirmatory HTS", hivst.resultConfirmatoryHts AS "Result of confirmatory HTS", + hivst.posLinked AS "Positive linked to care", hivst.accessPreventionService AS "Accessed prevention Services" + FROM + ( + SELECT facility.name as facilityName, facility_state.name as state, facility_lga.name as lga, boui.code AS datimId, p.uuid AS PersonUuid, p.id, p.uuid,p.hospital_number as hospitalNumber, + EXTRACT(YEAR from AGE(CAST('?3' AS DATE), date_of_birth)) as age, INITCAP(p.sex) AS sex, hst.service_delivery_point serviceDeliveryPoint, hst.date_of_visit AS visitDate, + hst.client_code AS clientCode, hst.result_of_previously_tested_within_12_months AS resultOfPreviouslyTestedIn12Month, hst.name_of_test_kit AS nameOfTestKit, hst.lot_number AS lotNumber, + hst.expiry_date AS expiryDate, hst.other_test_kit_user_details->0->'basicUserInfo'->>'maritalStatus' AS userMaritalStatus, hst.other_test_kit_user_details->0->'basicUserInfo'->>'userCategory' AS userCategory, + hst.other_test_kit_user_details->0->'basicUserInfo'->>'sex' AS userSex, hst.other_test_kit_user_details->0->'basicUserInfo'->>'age' AS userAge, hst.other_test_kit_user_details->0->'postTestAssessment'->>'everUsedHivstKit' AS everUsedHivstKit, + hst.type_of_hivst_kit_received AS typeOfHivstKit, hst.other_test_kit_user_details->0->'postTestAssessment'->>'resultOfHivstTest' AS resultOfHivstTest, '' AS collectorCodeStatus, '' AS entryPoint, '' AS targetGroup, hst.client_code AS collectorCode, hst.other_test_kit_user_details->0->'basicUserInfo'->>'clientCode' AS userClientCode, '' AS phoneNumber, '' AS contactAddress, hst.other_test_kit_user_details->0->'basicUserInfo'->>'typeOfHivst' AS typeOfHivst, '' AS followUp, '' AS referredFor, '' AS facilityRefered, '' AS dateReferred, '' AS receivedConfirmatoryHts, '' As resultConfirmatoryHts, + '' AS posLinked, '' AS accessPreventionService + FROM patient_person p + LEFT JOIN base_organisation_unit facility ON facility.id=facility_id + LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id + LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id + LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=facility_id AND boui.name='DATIM_ID' + LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid + LEFT JOIN prep_enrollment PrEP ON PrEP.person_uuid = p.uuid + LEFT JOIN hts_client hts ON hts.person_uuid = p.uuid + INNER JOIN hivst hst ON hst.patient_id = p.id + WHERE p.facility_id='?1' AND p.archived = 0 AND CAST(hst.date_of_visit AS DATE) BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) hivst + adr-query-name: adr + adr-query: SELECT adr.state AS "State",adr.lga AS "L.G.A", + adr.facilityName AS "Facility Name",adr.datimId AS "DatimId",adr.PersonUuid AS "Patient ID",adr.ndrPatientIdentifier AS "NDR Patient Identifier",adr.hospitalNumber AS "Hospital Number",adr.uniqueId AS "Unique Id",adr.sex AS "Sex",adr.weight AS "Current Weight (kg)",adr.pregnancyStatus AS "Pregnancy Status",adr.date_of_birth AS "Date Birth (yyyy-mm-dd)",adr.age AS "Age", adr.entryPoint AS "Care Entry Point", + adr.dateOfCurrentRegimen AS "Date of Regimen (yyyy-mm-dd)", adr.regimen AS "Regimen", adr.genericName AS "Generic Drug Name", adr.brandName AS "Brand Name", adr.dosage1 AS "Dosage of Drug", adr.manufacturerName AS "Name of Manufacturer",adr.manufacturerAddress AS "Address of Manufacturer",adr.batchNo AS "Batch Number",adr.nafdacNo AS "NAFDAC Number",adr.expiryDate AS "Expiry Date", adr.created_date AS "Pickup Date (yyyy-mm-dd)", + adr.eventDescription AS "Adverse Event (Notes for Description)",adr.onsetDate AS "Date of Adverse Event",adr.seriousDeath AS "Seriousness of Adverse Event_Death", adr.dateOfDeath AS "Date of Death", adr.lifeThreatening AS "Seriousness of Adverse Event_Life threatening", adr.disability AS "Seriousness of Adverse Event_Disability or Permanent Damage", adr.anomaly AS "Seriousness of Adverse Event_Congenital Anomaly/Birth Defects", adr.intervention AS "Seriousness of Adverse Event_Require intervention to permanent impairment", adr.hospitalization AS "Seriousness of Adverse Event_hospitalization", adr.otherEvents AS "Seriousness of Adverse Event_Others", + adr.otherDescription AS "Seriousness of Adverse Event_Others Description",adr.outcomes AS "Outcomes of Adverse Events", + adr.stoppedDate AS "Stop Date of Adverse Event",adr.lgaOfResidence AS "Date Regimen was Stopped",adr.reactionStopped AS "Reaction Stopped or Reduced after Drug Withdrawal",adr.lgaOfResidence AS "Date Regimen was Re-Introduced",adr.reactionReappeared AS "Reaction Reappeared after Drug Reintroduction", + adr.concomitantBrandName AS "Name of Concomitant Medicines",adr.concomitantDosage AS "Dosage of Concomitant Medicines",adr.concomitantRoute AS "Route of Concomitant Medicines",adr.dateConcomitantStarted AS "Date of Start of Concomitant Medicines",adr.dateConcomitantStopped AS "Date of Stop of Concomitant Medicines",adr.concomitantReasonUse AS "Reason for use of Concomitant Medicines",adr.relevantTestDate AS "Date of Relevant Laboratory Tests",adr.relevantResult AS "Result of Relevant Laboratory Testa",adr.otherMedication AS "Other Relevant History", + adr.lastName AS "Last Name of Reporter",adr.firstName AS "First Name of Reporter",adr.reportAddress AS "Address of Reporter",adr.reportCity AS "City of Reporter",adr.reporterState AS "State of Reporter",adr.reporterCountry AS "Country of Reporter",adr.reporterPhoneNumber AS "Phone Number of Reporter",adr.reporterEmail AS "Email Address of Reporter", + adr.reportDate AS "Date of Reporting", adr.reporterHealthProf AS "Is Reporter a Health Professional",adr.reporterOccupation AS "Occupation of Reporter" + FROM ( + SELECT facility.name as facilityName, facility_state.name as state, facility_lga.name as lga, boui.code AS datimId, p.uuid AS PersonUuid, p.id, p.uuid,p.hospital_number as hospitalNumber, + p.date_of_birth, EXTRACT(YEAR from AGE(CAST('?3' AS DATE), date_of_birth)) as age, INITCAP(p.sex) AS sex, he.unique_id AS uniqueId, (SELECT display FROM base_application_codeset WHERE id = he.target_group_id) AS targRoup, CONCAT(boui.code, '_', p.uuid) AS ndrPatientIdentifier, + regimen.dateOfCurrentRegimen, regimen.regimen, CAST(regimen.refill_period /30.0 AS DECIMAL(10,1)) AS monthsOfARVRefill, + adr.reporter->>'lastName' AS lastName, adr.reporter->>'firstName' AS firstName, adr.reporter->>'address' AS reportAddress, adr.reporter->>'city' AS reportCity, adr.reporter->>'state' AS reporterState, + adr.reporter->>'country' AS reporterCountry, adr.reporter->>'phoneNumber' AS reporterPhoneNumber, adr.reporter->>'email' AS reporterEmail, adr.reporter->>'healthProfessional' AS reporterHealthProf, + adr.reporter->>'occupation' AS reporterOccupation, adr.concomitant_medicines->'medicines'->0->>'concomitantRoute' AS concomitantRoute, adr.concomitant_medicines->'medicines'->0->>'concomitantDosage' AS concomitantDosage, + adr.concomitant_medicines->'medicines'->0->>'concomitantBrandName' AS concomitantBrandName, adr.concomitant_medicines->'medicines'->0->>'dateConcomitantStarted' AS dateConcomitantStarted, adr.concomitant_medicines->'medicines'->0->>'dateConcomitantStopped' AS dateConcomitantStopped, + adr.concomitant_medicines->'medicines'->0->>'concomitantReasonUse' AS concomitantReasonUse, adr.concomitant_medicines->'medicines'->0->>'relevantTestDate' AS relevantTestDate, adr.concomitant_medicines->'medicines'->0->>'relevantResult' AS relevantResult, + drugs.brandName AS brandName, drugs.dosage AS dosage1, drugs.genericName AS genericName, adr.severe_drugs->'drugs'->0->>'manufacturerName' AS manufacturerName, adr.severe_drugs->'drugs'->0->>'manufacturerAddress' AS manufacturerAddress, adr.severe_drugs->'drugs'->0->>'batchNo' AS batchNo, + adr.severe_drugs->'drugs'->0->>'nafdacNo' AS nafdacNo, adr.severe_drugs->'drugs'->0->>'expiryDate' AS expiryDate, adr.severe_drugs->>'dateMedicationStarted' AS dateMedicationStarted, adr.severe_drugs->>'dosage' AS dosage,adr.severe_drugs->>'administrationRoute' administrationRoute, + adr.weight, (CASE WHEN INITCAP(p.sex) = 'Male' THEN NULL WHEN preg.display IS NOT NULL THEN preg.display ELSE hac.pregnancy_status + END ) AS pregnancyStatus,adr.adverse_effect, lgaOfResidence.lgaOfResidence AS lgaOfResidenceNew, adr.created_date, adr.adverse_effect->>'eventDescription' AS eventDescription, adr.adverse_effect->>'onsetDate' AS onsetDate, (select display from base_application_codeset where code = adr.adverse_effect->>'outcomes') AS outcomes, adr.adverse_effect->>'stoppedDate' AS stoppedDate, + adr.report_date AS reportDate, (select display from base_application_codeset where code = adr.concomitant_medicines->>'preexistingMedicalConditions') AS otherMedication, adr.severe_drugs->'drugs'->0->>'reactionReappeared' AS reactionReappeared, adr.severe_drugs->'drugs'->0->>'reactionStopped' AS reactionStopped, + (CASE WHEN adr.adverse_effect->>'death' = 'true' THEN 'YES' ELSE 'NO' END) AS seriousDeath, (CASE WHEN adr.adverse_effect->>'death' = 'true' AND adr.adverse_effect->>'dateOfDeath' IS NOT NULL THEN adr.adverse_effect->>'dateOfDeath' ELSE '' END) AS dateOfDeath, (CASE WHEN adr.adverse_effect->>'lifeThreatening' = 'true' THEN 'YES' ELSE 'NO' END) AS lifeThreatening, + (CASE WHEN adr.adverse_effect->>'disability' = 'true' THEN 'YES' ELSE 'NO' END) AS disability, (CASE WHEN adr.adverse_effect->>'anomaly' = 'true' THEN 'YES' ELSE 'NO' END) AS anomaly, (CASE WHEN adr.adverse_effect->>'intervention' = 'true' THEN 'YES' ELSE 'NO' END) AS intervention, adr.adverse_effect->>'hospitalization' AS hospitalization, + (CASE WHEN adr.adverse_effect->>'others' = 'true' THEN 'YES' ELSE 'NO' END) AS otherEvents, (CASE WHEN adr.adverse_effect->>'others' = 'false' THEN '' ELSE adr.adverse_effect->>'otherDescription' END) AS otherDescription, '' AS lgaOfResidence, (CASE WHEN he.entry_point_id IN (481) THEN NULL ELSE (select display from base_application_codeset where id = he.entry_point_id) END) AS entryPoint + FROM patient_person p + LEFT JOIN base_organisation_unit facility ON facility.id=facility_id + LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id=facility.parent_organisation_unit_id + LEFT JOIN base_organisation_unit facility_state ON facility_state.id=facility_lga.parent_organisation_unit_id + LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=facility_id AND boui.name='DATIM_ID' + LEFT JOIN hiv_enrollment he ON he.person_uuid = p.uuid + INNER JOIN adr_table adr ON adr.patient_uuid = p.uuid + LEFT JOIN ( + SELECT + patient_uuid AS personUuid2, + string_agg(concat('(', drug->>'dosage', ')'), ',') AS dosage, + string_agg(concat('(', drug->>'brandName', ')'), ',') AS brandName, + string_agg(concat('(', drug->>'genericName', ')'), ',') AS genericName + FROM + adr_table, + jsonb_array_elements(severe_drugs->'drugs') AS drug + GROUP BY patient_uuid + ) drugs ON drugs.personUuid2 = p.uuid + LEFT JOIN hiv_art_clinical hac on adr.patient_uuid = hac.person_uuid + LEFT JOIN base_application_codeset preg ON preg.code = hac.pregnancy_status + LEFT JOIN (select DISTINCT ON (personUuid) personUuid as personUuid11, + case when (addr ~ '^[0-9\\\\\\\\\\\\\\\\.]+$') =TRUE + then (select name from base_organisation_unit where id = cast(addr as int)) ELSE + (select name from base_organisation_unit where id = cast(facilityLga as int)) end as lgaOfResidence + from ( + select pp.uuid AS personUuid, facility_lga.parent_organisation_unit_id AS facilityLga, (jsonb_array_elements(pp.address->'address')->>'district') as addr from patient_person pp + LEFT JOIN base_organisation_unit facility_lga ON facility_lga.id = CAST (pp.organization->'id' AS INTEGER) + ) dt ) lgaOfResidence ON lgaOfResidence.personUuid11 = hac.person_uuid + LEFT JOIN ( + SELECT + DISTINCT ON (regiment_table.person_uuid) regiment_table.person_uuid AS person_uuid1, + start_or_regimen AS dateOfCurrentRegimen, + regiment_table.max_visit_date, + regiment_table.regimen, hap.refill_period + FROM + ( + SELECT + MIN(visit_date) start_or_regimen, + MAX(visit_date) max_visit_date, + regimen, + person_uuid + FROM + ( + SELECT + hap.id, + hap.person_uuid, hap.refill_period, + hap.visit_date, + hivreg.description AS regimen, + ROW_NUMBER() OVER( + ORDER BY + person_uuid, + visit_date + ) rn1, + ROW_NUMBER() OVER( + PARTITION BY hivreg.description + ORDER BY + person_uuid, + visit_date + ) rn2 + FROM + public.hiv_art_pharmacy AS hap + INNER JOIN ( + SELECT + MAX(hapr.id) AS id, + art_pharmacy_id, + regimens_id, + hr.description + FROM + public.hiv_art_pharmacy_regimens AS hapr + INNER JOIN hiv_regimen AS hr ON hapr.regimens_id = hr.id + WHERE + hr.regimen_type_id IN (1,2,3,4,14) + GROUP BY + art_pharmacy_id, + regimens_id, + hr.description + ) AS hapr ON hap.id = hapr.art_pharmacy_id and hap.archived=0 + INNER JOIN hiv_regimen AS hivreg ON hapr.regimens_id = hivreg.id + INNER JOIN hiv_regimen_type AS hivregtype ON hivreg.regimen_type_id = hivregtype.id + AND hivreg.regimen_type_id IN (1,2,3,4,14) + ORDER BY + person_uuid, + visit_date + ) t + GROUP BY + person_uuid, + regimen, + rn1 - rn2 + ORDER BY + MIN(visit_date) + ) AS regiment_table + INNER JOIN ( + SELECT + DISTINCT MAX(visit_date) AS max_visit_date, + person_uuid, refill_period + FROM hiv_art_pharmacy + WHERE archived=0 + GROUP BY + person_uuid, refill_period + ) AS hap ON regiment_table.person_uuid = hap.person_uuid + WHERE + regiment_table.max_visit_date = hap.max_visit_date + GROUP BY + regiment_table.person_uuid, + regiment_table.regimen, + regiment_table.max_visit_date, hap.refill_period, + start_or_regimen + ) regimen ON regimen.person_uuid1 = p.uuid + WHERE p.facility_id='?1' AND p.archived = 0 AND CAST(adr.created_date AS DATE) BETWEEN CAST('?2' AS DATE) AND CAST('?3' AS DATE) + ) adr \ No newline at end of file diff --git a/runtime/ndr/transfer/ndr/03322_Qohvpui82h3_UruaInyangPrimaryHealthCentre_treatment_08092024 b/runtime/ndr/transfer/ndr/03322_Qohvpui82h3_UruaInyangPrimaryHealthCentre_treatment_08092024 new file mode 100644 index 00000000..56144a27 Binary files /dev/null and b/runtime/ndr/transfer/ndr/03322_Qohvpui82h3_UruaInyangPrimaryHealthCentre_treatment_08092024 differ diff --git a/runtime/ndr/transfer/ndr/03322_Qohvpui82h3_UruaInyangPrimaryHealthCentre_treatment_25092024 b/runtime/ndr/transfer/ndr/03322_Qohvpui82h3_UruaInyangPrimaryHealthCentre_treatment_25092024 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"integrity": "sha512-12y/P9MSig9/5BEhBgylss+fkHiCRZCvYR81eH35NW9uw801cvJt31EAV+WOLcwZRZbLiIQl/hxcdXXXFmGvXg==", - "engines": { - "node": ">=4" - } - }, - "node_modules/yup": { - "version": "0.32.11", - "resolved": "https://registry.npmjs.org/yup/-/yup-0.32.11.tgz", - "integrity": "sha512-Z2Fe1bn+eLstG8DRR6FTavGD+MeAwyfmouhHsIUgaADz8jvFKbO/fXc2trJKZg+5EBjh4gGm3iU/t3onKlXHIg==", - "dependencies": { - "@babel/runtime": "^7.15.4", - "@types/lodash": "^4.14.175", - "lodash": "^4.17.21", - "lodash-es": "^4.17.21", - "nanoclone": "^0.2.1", - "property-expr": "^2.0.4", - "toposort": "^2.0.2" - }, - "engines": { - "node": ">=10" - } - } - } -} diff --git a/starter-module/package.json b/starter-module/package.json index 06cfc21f..74c37535 100644 --- a/starter-module/package.json +++ b/starter-module/package.json @@ -81,6 +81,7 @@ "react-overlay-loading": "^1.0.3", "react-perfect-scrollbar": "^1.5.8", "react-phone-input-2": "^2.15.1", + "react-query": "^3.19.0", "react-redux": "^7.2.4", "react-resize-detector": "^5.2.0", "react-router-dom": "^5.2.0", @@ -114,8 +115,8 @@ "yup": "^0.32.8" }, "scripts": { - "start": "react-scripts --openssl-legacy-provider start", - "build": "react-scripts --openssl-legacy-provider build && xcopy /s /y build src\\main\\resources\\static", + "start": "react-scripts start", + "build": "react-scripts build && mkdir -p src/main/resources/static && cp -r build/* src/main/resources/static", "test": "react-scripts test", "eject": "react-scripts eject" }, diff --git a/starter-module/pom.xml b/starter-module/pom.xml index 45bad263..575d1ad3 100644 --- a/starter-module/pom.xml +++ b/starter-module/pom.xml @@ -5,7 +5,7 @@ 4.0.0 org.lamisplus lamisplus - 2.2.2.1 + 2.3.0.2 jar diff --git a/starter-module/public/index.html b/starter-module/public/index.html index a5c48e03..b3604697 100644 --- a/starter-module/public/index.html +++ b/starter-module/public/index.html @@ -7,7 +7,7 @@ - LAMISPlus 2.2.2.1 + LAMISPlus 2.3.0 diff --git a/starter-module/src/App.js b/starter-module/src/App.js index 21712372..330bd667 100644 --- a/starter-module/src/App.js +++ b/starter-module/src/App.js @@ -1,21 +1,20 @@ -import { lazy, Suspense, useEffect, useState, useRef } from "react"; -import moment from "moment"; +import { lazy, Suspense } from "react"; /// Components import Index from "./main/webapp/jsx"; import { connect, useDispatch } from "react-redux"; import { Route, Switch, withRouter, Redirect } from "react-router-dom"; import Policy from "./main/webapp/jsx/pages/Policy"; -// action -/// Style import "./main/webapp/vendor/bootstrap-select/dist/css/bootstrap-select.min.css"; import "./main/webapp/css/style.css"; import { BehaviorSubject } from "rxjs"; +import { QueryClientProvider } from "react-query"; +import { ReactQueryDevtools } from "react-query/devtools"; +import { queryClient } from "./main/webapp/_helpers/queryClient"; const currentUserSubject = new BehaviorSubject( JSON.parse(localStorage.getItem("currentUser")) ); -//console.log(currentUserSubject) const Login = lazy(() => { return new Promise((resolve) => { @@ -25,70 +24,6 @@ const Login = lazy(() => { function App(props) { const dispatch = useDispatch(); - // const [events, setEvents] = useState(["click", "load", "scroll"]); - // - // let timeStamp; - // let startTimerInterval = useRef(); - // let warningInactiveInterval = useRef(); - // - // const timerCheck = () => { - // startTimerInterval.current = setTimeout(() => { - // timeStamp = sessionStorage.getItem("lastTimeStamp"); - // logOff(timeStamp); - // }, 60000); - // }; - // - // const setTimestamp = () => { - // clearTimeout(startTimerInterval.current); - // clearInterval(warningInactiveInterval.current); - // - // if (currentUserSubject._value !== null) { - // let currentTimestamp = moment(); - // sessionStorage.setItem("lastTimeStamp", currentTimestamp); - // timerCheck(); - // } else { - // clearInterval(warningInactiveInterval.current); - // sessionStorage.removeItem("lastTimeStamp"); - // } - // }; - // - // const logOff = (timeString) => { - // clearTimeout(startTimerInterval.current); - // - // warningInactiveInterval.current = setInterval(() => { - // const maxTime = 10; - // - // const diff = moment.duration(moment().diff(moment(timeString))); - // const minPast = diff.minutes(); - // const leftSecond = 60 - diff.seconds(); - // - // if (minPast === maxTime) { - // console.log("logout"); - // clearInterval(warningInactiveInterval.current); - // sessionStorage.removeItem("lastTimeStamp"); - // //localStorage.clear(); - // //window.location.href = "/login"; - // } - // }, 1000); - // }; - - // useEffect(() => { - // events.forEach((event) => { - // window.addEventListener(event, setTimestamp); - // }); - // - // timerCheck(); - // return () => { - // clearTimeout(startTimerInterval.current); - // }; - // }, [setTimestamp, events, timerCheck]); - - // useEffect(() => { - // // checkAutoLogin(dispatch, props.history); - // if (currentUserSubject._value!==null) { - // window.location.href = "/login"; - // } - // }, [currentUserSubject._value]); let routes = ( @@ -97,40 +32,49 @@ function App(props) { ); + + if (currentUserSubject._value !== null) { return ( <> - -
-
-
-
+ + +
+
+
+
+
- - } - > - - + } + > + + + + ); } else { return (
- -
-
-
-
+ + +
+
+
+
+
-
- } - > - {routes} - + } + > + {routes} + + + + ); } diff --git a/starter-module/src/main/resources/application.yml b/starter-module/src/main/resources/application.yml index 17869ac2..d15ba633 100644 --- a/starter-module/src/main/resources/application.yml +++ b/starter-module/src/main/resources/application.yml @@ -165,6 +165,7 @@ lamisplus: useServerPrepStmts: true maximum-pool-size: 5 minimum-idle: 3 + connection-timeout: 60000 base-url: version-one: "/api/v1/" secugen: @@ -172,36 +173,4 @@ lamisplus: server-url: http://localhost:8282 server-port: 8282 timeout: 3000 - quality: 80 -#query: -# index-query: SELECT boui.code as "Facility Id (Datim)", state.name AS "State", lga.name AS "LGA", facility.name AS "Facility", hc.client_code AS "Client Code", -# pp.uuid AS "Patient Id", -# hc.uuid AS "Index HTS Uuid", -# (CASE WHEN hc.test1->>'result' ILIKE 'Yes' THEN 'Positive' ELSE 'Negative' END) AS "HIV Status of Index", -# hc.index_notification_services_elicitation ->> 'OfferedIns' AS "Offered INS", -# hc.index_notification_services_elicitation ->> 'AcceptedIns' AS "Accepted INS", -# hc.client_code AS "Index Code", -# hie.first_name AS "First Name", -# hie.last_name AS "Last Name", -# hie.middle_name AS "Middle Name", -# hie.phone_number AS "Phone Number", -# hie.dob AS "Date of Birth", -# se.display AS "Sex", -# hie.address AS "Address", -# noti_method.display AS "Notification Method", -# sexually_un.display AS "Sexually uncomfortable", -# CASE WHEN hie.currently_live_with_partner IS TRUE THEN 'Yes' ELSE 'No' END AS "Currently living with partner", -# relationship.display AS "Relationship with index client", -# hie.date_partner_came_for_testing AS "Date Partner Came For Testing" -# FROM hts_client hc -# LEFT JOIN patient_person pp ON pp.uuid=hc.person_uuid -# INNER JOIN hts_index_elicitation hie ON hie.hts_client_uuid = hc.uuid -# LEFT JOIN base_application_codeset se ON se.id=hie.sex -# LEFT JOIN base_application_codeset noti_method ON noti_method.id=hie.notification_method -# LEFT JOIN base_application_codeset sexually_un ON sexually_un.id=hie.sexually_uncomfortable -# LEFT JOIN base_application_codeset relationship ON relationship.id=hie.relationship_with_index_client -# LEFT JOIN base_organisation_unit facility ON facility.id=hc.facility_id -# LEFT JOIN base_organisation_unit state ON state.id=facility.parent_organisation_unit_id -# LEFT JOIN base_organisation_unit lga ON lga.id=state.parent_organisation_unit_id -# LEFT JOIN base_organisation_unit_identifier boui ON boui.organisation_unit_id=hc.facility_id AND boui.name='DATIM_ID' -# WHERE hc.archived=0 \ No newline at end of file + quality: 80 \ No newline at end of file diff --git a/starter-module/src/main/webapp/_helpers/queryClient.js b/starter-module/src/main/webapp/_helpers/queryClient.js new file mode 100644 index 00000000..c828504a --- /dev/null +++ b/starter-module/src/main/webapp/_helpers/queryClient.js @@ -0,0 +1,22 @@ +import { QueryClient } from "react-query"; + +const queryClientSettings = { + defaultOptions: { + queries: { + retry: 2, + refetchOnMount: "always", + refetchOnWindowFocus: true, + refetchOnReconnect: true, + cacheTime: 60000, + refetchInterval: 3.6e6, + refetchIntervalInBackground: true, + suspense: false, + staleTime: Infinity, + }, + mutations: { + retry: 2, + }, + }, +}; + +export const queryClient = new QueryClient(queryClientSettings); \ No newline at end of file diff --git a/starter-module/src/main/webapp/_services/authentication.js b/starter-module/src/main/webapp/_services/authentication.js index aa086914..67be0f3d 100644 --- a/starter-module/src/main/webapp/_services/authentication.js +++ b/starter-module/src/main/webapp/_services/authentication.js @@ -1,5 +1,5 @@ import { BehaviorSubject } from 'rxjs'; -import {url as baseUrl, url} from "../api"; +import { url as baseUrl, url } from "../api"; import { handleResponse } from '../_helpers'; import store from './../store'; import * as ACTION_TYPES from "../actions/types"; @@ -17,12 +17,13 @@ export const authentication = { login, logout, currentUser: currentUserSubject.asObservable(), - get currentUserValue () { return currentUserSubject.value }, + get currentUserValue() { return currentUserSubject.value }, getCurrentUserPermissions: getCurrentUserPermissions, getCurrentUserRole: getCurrentUserRoles, getCurrentUser, userHasRole: userHasPermission, - fetchMe + fetchMe, + fetchCurrentOrganisationUnitId }; function login(username, password, remember) { @@ -34,7 +35,7 @@ function login(username, password, remember) { return fetch(`${url}authenticate`, requestOptions) .then(handleResponse) - .then( async user => { + .then(async user => { dispatch({ type: ACTION_TYPES.AUTHENTICATION, payload: "Authenticated" @@ -49,30 +50,30 @@ function login(username, password, remember) { }); } -async function saveToLocalStorage(key, value){ +async function saveToLocalStorage(key, value) { localStorage.setItem(key, value); } function logout(history) { - currentUserSubject.next(null); - localStorage.clear(); - // you can also like localStorage.removeItem('Token'); - window.location.href = "/login"; - // console.log(history) - // history.push('/login'); - // remove user from local storage to log user out + currentUserSubject.next(null); + localStorage.clear(); + // you can also like localStorage.removeItem('Token'); + window.location.href = "/login"; + // console.log(history) + // history.push('/login'); + // remove user from local storage to log user out } function getCurrentUserPermissions() { const currentUserPermissions = localStorage.getItem('currentUser_Permission') != null ? JSON.parse(localStorage.getItem('currentUser_Permission')) : null; - if(!currentUserPermissions){ + if (!currentUserPermissions) { return []; } // fetch all the permissions of the logged in user const permissions = currentUserPermissions; - if(!permissions || permissions.length < 1){ + if (!permissions || permissions.length < 1) { return []; } return permissions; @@ -81,28 +82,28 @@ function getCurrentUserPermissions() { function getCurrentUserRoles() { const currentUserRoles = localStorage.getItem('currentUser_Role') != null ? JSON.parse(localStorage.getItem('currentUser_Role')) : null; - if(!currentUserRoles){ + if (!currentUserRoles) { return []; } // fetch all the permissions of the logged in user const roles = currentUserRoles; - if(!roles || roles.length < 1){ + if (!roles || roles.length < 1) { return []; } return roles; } -function userHasPermission(perm){ +function userHasPermission(perm) { const permissions = getCurrentUserPermissions(); - if(perm && perm.length > 0 && _.intersection(perm, permissions).length === 0){ + if (perm && perm.length > 0 && _.intersection(perm, permissions).length === 0) { return false; } return true; } -function getCurrentUser(){ +function getCurrentUser() { const user = currentUserSubject.value; - if(!user || !user.id_token){ + if (!user || !user.id_token) { return []; } @@ -113,7 +114,7 @@ function getCurrentUser(){ return decoded; } -async function fetchMe(){ +async function fetchMe() { await axios .get(`${baseUrl}account`) @@ -121,7 +122,7 @@ async function fetchMe(){ const roles = JSON.stringify(response.data.roles); const perms = JSON.stringify(response.data.permissions); const userAccount = JSON.stringify(response.data); - + await saveToLocalStorage('currentUser_Roles', roles); await saveToLocalStorage('currentUser_Permission', perms); await saveToLocalStorage('user_account', userAccount); @@ -141,9 +142,17 @@ async function fetchMe(){ }); } -async function fetchModuleUpdates(){ - await axios +async function fetchCurrentOrganisationUnitId() { + + const currentUserLocal = localStorage.getItem('user_account') ? JSON.parse(localStorage.getItem('user_account')) : null + + return currentUserLocal ? currentUserLocal.currentOrganisationUnitId : null; +} + +async function fetchModuleUpdates() { + + await axios .get(`${baseUrl}module-releases `) .then((response) => { diff --git a/starter-module/src/main/webapp/_services/deleteChartConfig.js b/starter-module/src/main/webapp/_services/deleteChartConfig.js new file mode 100644 index 00000000..c6d15df1 --- /dev/null +++ b/starter-module/src/main/webapp/_services/deleteChartConfig.js @@ -0,0 +1,13 @@ +import axios from "axios"; +import { token, url } from "../api"; + +export const deleteChartConfig = async (indicatorName) => { + const { data } = await axios.delete( + `${url}charts/delete-chart`, + { + params: { indicatorName }, + headers: { Authorization: `Bearer ${token}` }, + } + ); + return data; +}; diff --git a/starter-module/src/main/webapp/_services/exportChartConfig.js b/starter-module/src/main/webapp/_services/exportChartConfig.js new file mode 100644 index 00000000..dc859520 --- /dev/null +++ b/starter-module/src/main/webapp/_services/exportChartConfig.js @@ -0,0 +1,40 @@ +import axios from "axios"; +import { token, url } from "../api"; +import { toast } from "react-toastify"; + +export const exportChart = async () => { + try { + const response = await axios.get(`${url}charts/export-charts`, { + headers: { Authorization: `Bearer ${token}` }, + responseType: "blob", + }); + + // Try to get filename from Content-Disposition header + let filename = "Charts.json"; // Default filename + const contentDisposition = response.headers['content-disposition']; + + if (contentDisposition) { + const filenameMatch = contentDisposition.match(/filename="?(.+)"?/); + if (filenameMatch && filenameMatch.length > 1) { + filename = filenameMatch[1]; + } + } + + const fileUrl = window.URL.createObjectURL(new Blob([response.data])); + const link = document.createElement("a"); + link.href = fileUrl; + link.setAttribute("download", filename); + document.body.appendChild(link); + link.click(); + + // Clean up + link.remove(); + window.URL.revokeObjectURL(fileUrl); + + // Show success message + toast.success("Chart configuration exported successfully"); + } catch (error) { + console.error("Failed to export chart:", error); + toast.error("Failed to export chart configuration"); + } +}; \ No newline at end of file diff --git a/starter-module/src/main/webapp/_services/fetchChartConfig.js b/starter-module/src/main/webapp/_services/fetchChartConfig.js new file mode 100644 index 00000000..b2c69443 --- /dev/null +++ b/starter-module/src/main/webapp/_services/fetchChartConfig.js @@ -0,0 +1,9 @@ +import axios from "axios"; +import { token, url } from "../api"; + +export const fetchChartConfig = async () => { + const { data } = await axios.get(`${url}charts`, { + headers: { Authorization: `Bearer ${token}` }, + }); + return data; +}; \ No newline at end of file diff --git a/starter-module/src/main/webapp/_services/fetchChartData.js b/starter-module/src/main/webapp/_services/fetchChartData.js new file mode 100644 index 00000000..cb58850e --- /dev/null +++ b/starter-module/src/main/webapp/_services/fetchChartData.js @@ -0,0 +1,9 @@ +import axios from "axios"; +import { token, url } from "../api"; + +export const fetchChartData = async () => { + const { data } = await axios.get(`${url}charts/indicators?location=core`, { + headers: { Authorization: `Bearer ${token}` }, + }); + return data; +}; \ No newline at end of file diff --git a/starter-module/src/main/webapp/_services/fetchCurrentOrganisationUnitId.js b/starter-module/src/main/webapp/_services/fetchCurrentOrganisationUnitId.js new file mode 100644 index 00000000..69492a52 --- /dev/null +++ b/starter-module/src/main/webapp/_services/fetchCurrentOrganisationUnitId.js @@ -0,0 +1,6 @@ +import { authentication } from "./authentication"; + + +export const fetchCurrentOrganisationUnitId = async () => { + return await authentication.fetchCurrentOrganisationUnitId(); + }; \ No newline at end of file diff --git a/starter-module/src/main/webapp/_services/fetchIndicatorValues.js b/starter-module/src/main/webapp/_services/fetchIndicatorValues.js new file mode 100644 index 00000000..29a6f5c5 --- /dev/null +++ b/starter-module/src/main/webapp/_services/fetchIndicatorValues.js @@ -0,0 +1,14 @@ +import axios from "axios"; +import { token, url } from "../api"; + + + +export const fetchIndicatorValues = async (indicator, currentOrganisationUnitId) => { + const { data } = await axios.get( + `${url}charts/dashboard/values?indicatorName=${indicator.indicatorName}&facilityId=${currentOrganisationUnitId}`, + { + headers: { Authorization: `Bearer ${token}` }, + } + ); + return data.value || null; +}; \ No newline at end of file diff --git a/starter-module/src/main/webapp/_services/fetchInstanceSetting.js b/starter-module/src/main/webapp/_services/fetchInstanceSetting.js new file mode 100644 index 00000000..fe8a1003 --- /dev/null +++ b/starter-module/src/main/webapp/_services/fetchInstanceSetting.js @@ -0,0 +1,11 @@ +import { systemSettingsHelper } from "./SystemSettingsHelper"; + + +export const fetchInstanceSetting = async () => { + let instance = systemSettingsHelper.getSingleSystemSetting("instance"); + if (!instance) { + await systemSettingsHelper.fetchAllSystemSettings(); + instance = systemSettingsHelper.getSingleSystemSetting("instance"); + } + return instance; + }; \ No newline at end of file diff --git a/starter-module/src/main/webapp/_services/importCharts.js b/starter-module/src/main/webapp/_services/importCharts.js new file mode 100644 index 00000000..5250aad4 --- /dev/null +++ b/starter-module/src/main/webapp/_services/importCharts.js @@ -0,0 +1,25 @@ +import axios from "axios"; +import { token, url } from "../api"; +import { toast } from "react-toastify"; + +export const importCharts = async (file) => { + try { + const formData = new FormData(); + formData.append('file', file); + + const response = await axios.post(`${url}charts/import-charts`, formData, { + headers: { + Authorization: `Bearer ${token}`, + 'Content-Type': 'multipart/form-data' + } + }); + + toast.success("Chart configuration imported successfully"); + return response.data; + } catch (error) { + console.error("Failed to import chart:", error); + const errorMessage = error.response?.data?.message || "Failed to import chart configuration"; + toast.error(errorMessage); + throw error; + } +}; \ No newline at end of file diff --git a/starter-module/src/main/webapp/_services/updateChartConfig.js b/starter-module/src/main/webapp/_services/updateChartConfig.js new file mode 100644 index 00000000..aa5d59de --- /dev/null +++ b/starter-module/src/main/webapp/_services/updateChartConfig.js @@ -0,0 +1,21 @@ +import axios from "axios"; +import { token, url } from "../api"; + +export const updateChartConfig = async (payload) => { + const { data } = await axios.put( + `${url}charts/update-chart?indicatorName=${payload?.indicatorName}`, + { + description: payload.description, + displayName: payload.displayName, + icon: payload.icon, + location: payload.location, + module: payload.module, + position: payload.position, + type: payload.type, + }, + { + headers: { Authorization: `Bearer ${token}` }, + } + ); + return data; +}; diff --git a/starter-module/src/main/webapp/api/index.js b/starter-module/src/main/webapp/api/index.js index a428f23a..1475acf7 100644 --- a/starter-module/src/main/webapp/api/index.js +++ b/starter-module/src/main/webapp/api/index.js @@ -3,9 +3,17 @@ //Local Server // export const url = "http://localhost:9091/api/v1/"; -// // // export const url = "https://lamisplus-sync.org/api/v1/"; // export const token = -// "eyJhbGciOiJIUzUxMiJ9.eyJzdWIiOiJBYmlvZHVuQFBldGVyIiwiYXV0aCI6IlN1cGVyIEFkbWluLE92ZXJhbGwgQWRtaW4iLCJuYW1lIjoiUGV0ZXIgQWJpb2R1biIsImV4cCI6MTcxNDY2NTgzM30.1sgfM91s1Zef3hQrrjLgQcyW7lkObfx4SiKz7SJARopFb_tvhG1oXnHxhBcXFZCkMHpsnlnYTVwWAql_UxxmTg"; +// "eyJhbGciOiJIUzUxMiJ9.eyJzdWIiOiJndWVzdEBsYW1pc3BsdXMub3JnIiwiYXV0aCI6IlN1cGVyIEFkbWluLEZhY2lsaXR5IEFkbWluLERhdGEgQ2xlcmssT25seUFkbWluUmVhZCxIYXNCb3RoQWRtaW5SZWFkQW5kV3JpdGUsVXNlcixSb2xlIFNhbXBsZSIsIm5hbWUiOiJHdWVzdCBHdWVzdCIsImV4cCI6MTc1NzUzNTAxNn0.1sQ7PSGOsXbF4J4V8lhhEcourhnYzTXilNDFGerKlb1hpR0X_SCqRL8hOyix0CeKBo3IL0sxcmk4L1L5sI_Q8Q"; +export const url = +process.env.NODE_ENV === "development" +? "http://localhost:9090/api/v1/" +: "/api/v1/"; -export const token = new URLSearchParams(window.location.search).get("jwt"); -export const url = "/api/v1/"; +// export const token = new URLSearchParams(window.location.search).get("jwt"); +// export const url = "/api/v1/"; + +export const token = + process.env.NODE_ENV === "development" + ? "eyJhbGciOiJIUzUxMiJ9.eyJzdWIiOiJndWVzdEBsYW1pc3BsdXMub3JnIiwiYXV0aCI6IlN1cGVyIEFkbWluLEZhY2lsaXR5IEFkbWluLERhdGEgQ2xlcmssT25seUFkbWluUmVhZCxIYXNCb3RoQWRtaW5SZWFkQW5kV3JpdGUsVXNlcixSb2xlIFNhbXBsZSIsIm5hbWUiOiJHdWVzdCBHdWVzdCIsImV4cCI6MTc1Nzk0NzcxOH0.SXC1FYURE-5LEw7y95F43tWmPn50B-HKaYxS3cCGKJdXnYvzlGNLP6nzqzfWRAyH3jUfvB7AxDyVkbQPhRbw7Q" + : new URLSearchParams(window.location.search).get("jwt"); \ No newline at end of file diff --git a/starter-module/src/main/webapp/jsx/components/ApplicationCodeset/ApplicationCodesetSearch.js b/starter-module/src/main/webapp/jsx/components/ApplicationCodeset/ApplicationCodesetSearch.js index 11a349be..9bbb8312 100644 --- a/starter-module/src/main/webapp/jsx/components/ApplicationCodeset/ApplicationCodesetSearch.js +++ b/starter-module/src/main/webapp/jsx/components/ApplicationCodeset/ApplicationCodesetSearch.js @@ -1,11 +1,11 @@ -import React, {useEffect, forwardRef, useState} from 'react'; +import React, { useEffect, forwardRef, useState } from 'react'; import MaterialTable from 'material-table'; import { connect } from "react-redux"; -import { fetchAll, deleteApplicationCodeset} from "./../../../actions/applicationCodeset"; +import { fetchAll, deleteApplicationCodeset } from "./../../../actions/applicationCodeset"; // import { Dropdown } from "react-bootstrap"; import { Card, - CardBody, FormGroup, Input, Spinner, + CardBody, FormGroup, Input, Spinner, } from 'reactstrap'; import { url as baseUrl } from "../../../api"; import axios from 'axios'; @@ -14,14 +14,14 @@ import Breadcrumbs from "@material-ui/core/Breadcrumbs"; import Typography from "@material-ui/core/Typography"; import { Link } from 'react-router-dom' import ButtonMui from "@material-ui/core/Button"; -import {FaDownload, FaEye, FaPlus, FaUpload} from "react-icons/fa"; +import { FaDownload, FaEye, FaPlus, FaUpload } from "react-icons/fa"; import NewApplicationCodeset from "./NewApplicationCodeset"; import SaveIcon from "@material-ui/icons/Delete"; import CancelIcon from "@material-ui/icons/Cancel"; -import {makeStyles} from "@material-ui/core/styles"; +import { makeStyles } from "@material-ui/core/styles"; import { ToastContainer, toast } from "react-toastify"; import PageTitle from "./../../layouts/PageTitle"; -import { Button, Modal} from "react-bootstrap"; +import { Button, Modal } from "react-bootstrap"; import AddBox from '@material-ui/icons/AddBox'; import ArrowUpward from '@material-ui/icons/ArrowUpward'; @@ -38,33 +38,33 @@ import Remove from '@material-ui/icons/Remove'; import SaveAlt from '@material-ui/icons/SaveAlt'; import Search from '@material-ui/icons/Search'; import ViewColumn from '@material-ui/icons/ViewColumn'; -import {Icon, Label} from "semantic-ui-react"; -import {MdModeEdit, MdPerson, MdDelete} from "react-icons/md"; +import { Icon, Label } from "semantic-ui-react"; +import { MdModeEdit, MdPerson, MdDelete } from "react-icons/md"; import SplitActionButton from "../Button/SplitActionButton"; import ServerInstalled from '../../Utils/ServerInstalled'; import { authentication } from '../../../_services/authentication'; -import { Dropdown,Button as Button2, Menu } from 'semantic-ui-react' +import { Dropdown, Button as Button2, Menu } from 'semantic-ui-react' // import EditIcon from "@material-ui/icons/Edit"; // import DeleteIcon from "@material-ui/icons/Delete"; const tableIcons = { -Add: forwardRef((props, ref) => ), -Check: forwardRef((props, ref) => ), -Clear: forwardRef((props, ref) => ), -Delete: forwardRef((props, ref) => ), -DetailPanel: forwardRef((props, ref) => ), -Edit: forwardRef((props, ref) => ), -Export: forwardRef((props, ref) => ), -Filter: forwardRef((props, ref) => ), -FirstPage: forwardRef((props, ref) => ), -LastPage: forwardRef((props, ref) => ), -NextPage: forwardRef((props, ref) => ), -PreviousPage: forwardRef((props, ref) => ), -ResetSearch: forwardRef((props, ref) => ), -Search: forwardRef((props, ref) => ), -SortArrow: forwardRef((props, ref) => ), -ThirdStateCheck: forwardRef((props, ref) => ), -ViewColumn: forwardRef((props, ref) => ) + Add: forwardRef((props, ref) => ), + Check: forwardRef((props, ref) => ), + Clear: forwardRef((props, ref) => ), + Delete: forwardRef((props, ref) => ), + DetailPanel: forwardRef((props, ref) => ), + Edit: forwardRef((props, ref) => ), + Export: forwardRef((props, ref) => ), + Filter: forwardRef((props, ref) => ), + FirstPage: forwardRef((props, ref) => ), + LastPage: forwardRef((props, ref) => ), + NextPage: forwardRef((props, ref) => ), + PreviousPage: forwardRef((props, ref) => ), + ResetSearch: forwardRef((props, ref) => ), + Search: forwardRef((props, ref) => ), + SortArrow: forwardRef((props, ref) => ), + ThirdStateCheck: forwardRef((props, ref) => ), + ViewColumn: forwardRef((props, ref) => ) }; const useStyles = makeStyles(theme => ({ @@ -107,29 +107,29 @@ const ApplicationCodesetSearch = (props) => { setHasAdminWriteRole(hasAdminWriteRole); } - const loadApplicationCodeset = () => { - const onSuccess = () => { - setLoading(false); - }; - const onError = () => { - setLoading(false); - }; - props.fetchAll(onSuccess, onError); + const loadApplicationCodeset = () => { + const onSuccess = () => { + setLoading(false); + }; + const onError = () => { + setLoading(false); + }; + props.fetchAll(onSuccess, onError); } -const processDelete = (id) => { - setDeleting(true); - const onSuccess = () => { - setDeleting(false); - toggleDeleteModal(); - toast.success("Application codeset deleted successfully!"); - loadApplicationCodeset(); - }; - const onError = () => { - setDeleting(false); - toast.error("Something went wrong, please contact administration"); - }; - props.delete(id, onSuccess, onError); + const processDelete = (id) => { + setDeleting(true); + const onSuccess = () => { + setDeleting(false); + toggleDeleteModal(); + toast.success("Application codeset deleted successfully!"); + loadApplicationCodeset(); + }; + const onError = () => { + setDeleting(false); + toast.error("Something went wrong, please contact administration"); + }; + props.delete(id, onSuccess, onError); } const openApplicationCodeset = (row) => { setViewAltCode(false) @@ -146,34 +146,34 @@ const processDelete = (id) => { setCurrentCodeset(row); toggleDeleteModal(); } - function actionItems(row){ - return [ - + function actionItems(row) { + return [ + { - type:'button', - name:'Edit', - icon:, - onClick:(() => openApplicationCodeset(row)) + type: 'button', + name: 'Edit', + icon: , + onClick: (() => openApplicationCodeset(row)) }, { - type:'button', - name:'Delete', - icon:, - onClick:(() => deleteApplicationCodeset( row)) + type: 'button', + name: 'Delete', + icon: , + onClick: (() => deleteApplicationCodeset(row)) } ] } const exportApplicationCodeset = (fileType) => { - axios - .get(`${baseUrl}application-codesets/exportFile?fileType=${fileType}`, - { responseType: 'blob'} - ) - .then((response) => { - const responseData = response.data - let blob = new Blob([responseData], { type: "application/octet-stream" }); - FileSaver.saveAs(blob, `Appplication-codeset.${fileType}`); - }) + axios + .get(`${baseUrl}application-codesets/exportFile?fileType=${fileType}`, + { responseType: 'blob' } + ) + .then((response) => { + const responseData = response.data + let blob = new Blob([responseData], { type: "application/octet-stream" }); + FileSaver.saveAs(blob, `Appplication-codeset.${fileType}`); + }) } const importApplicationCodeset = (fileType) => { @@ -212,43 +212,43 @@ const processDelete = (id) => { return (
- + - -
- + +
+ {/* {serverInstalled && } - onClick={() => openApplicationCodeset(null)} - style={{backgroundColor:'#014d88', margin: '10px'}} + color="primary" + startIcon={} + onClick={() => openApplicationCodeset(null)} + style={{ backgroundColor: '#014d88', margin: '10px' }} > - Add Codeset + Add Codeset } {/* {!serverInstalled && } - disabled={importing} - onClick={() => importApplicationCodeset("json")} - style={{backgroundColor:'#014d88', margin: '10px'}} + color="primary" + startIcon={} + disabled={importing} + onClick={() => importApplicationCodeset("json")} + style={{ backgroundColor: '#014d88', margin: '10px' }} > - {importing ? : "Import Codeset"} + {importing ? : "Import Codeset"} } {hasAdminReadRole && } - onClick={() => exportApplicationCodeset("json")} - style={{backgroundColor:'#014d88', margin: '10px'}} + color="primary" + startIcon={} + onClick={() => exportApplicationCodeset("json")} + style={{ backgroundColor: '#014d88', margin: '10px' }} > - Export Codeset + Export Codeset }
{ { title: "Alternate Codeset", field: "altCode" }, { title: "Version", field: "version" }, { title: "Language", field: "language" }, - { title: "Action", field: "action", hidden: !hasAdminWriteRole}, + { title: "Action", field: "action", hidden: !hasAdminWriteRole }, ]} isLoading={loading} data={props.applicationCodesetList.map((row) => ({ @@ -271,7 +271,7 @@ const processDelete = (id) => { language: row.language, version: row.version, action: -
+
@@ -296,19 +296,19 @@ const processDelete = (id) => { }))} - + //overriding action menu with props.actions components={props.actions} options={{ headerStyle: { backgroundColor: "#014d88", color: "#fff", - fontSize:'16px', - padding:'10px', - zIndex:'3', + fontSize: '16px', + padding: '10px', + zIndex: '3', }, searchFieldStyle: { - width : '250%', + width: '250%', margingLeft: '250px', }, filtering: false, @@ -317,10 +317,10 @@ const processDelete = (id) => { actionsColumnIndex: -1 }} /> - + - - + + Delete Global Variable - {currentCodeset && currentCodeset.display ? currentCodeset.display : ""} @@ -336,28 +336,28 @@ const processDelete = (id) => {

Are you sure you want to proceed ?

- } - disabled={deleting} - onClick={() => processDelete(currentCodeset.id)} - > - Delete {deleting ? : ""} - - } - > - Cancel - - - - + } + disabled={deleting} + onClick={() => processDelete(currentCodeset.id)} + > + Delete {deleting ? : ""} + + } + > + Cancel + + + + Import Application Codesets @@ -368,35 +368,35 @@ const processDelete = (id) => { > - + - + -
Select Application Codeset {importFileType.toUpperCase()} File
- {/* */} - - {/* {applicationCodesetImportedFile?.name} */} +
Select Application Codeset {importFileType.toUpperCase()} File
+ {/* */} + + {/* {applicationCodesetImportedFile?.name} */} {/* */} - } - onClick={() => triggerImportApplicationCodeset()} - style={{backgroundColor:'#014d88', margin: '10px'}} - disabled={importing} - > - {importing ? : "Import Codeset"} - + } + onClick={() => triggerImportApplicationCodeset()} + style={{ backgroundColor: '#014d88', margin: '10px' }} + disabled={importing} + > + {importing ? : "Import Codeset"} + { - - -
+ + +
); } diff --git a/starter-module/src/main/webapp/jsx/components/ChartConfig/ChartConfigPage.js b/starter-module/src/main/webapp/jsx/components/ChartConfig/ChartConfigPage.js new file mode 100644 index 00000000..fcbf84c5 --- /dev/null +++ b/starter-module/src/main/webapp/jsx/components/ChartConfig/ChartConfigPage.js @@ -0,0 +1,667 @@ +import React, { useRef, useState } from "react"; +import { Card, CardContent, Button as MuiButton, Dialog, DialogActions, DialogContent, DialogTitle } from "@material-ui/core"; +import { makeStyles } from "@material-ui/core/styles"; +import PageTitle from "./../../layouts/PageTitle"; +import { ToastContainer } from "react-toastify"; +import "semantic-ui-css/semantic.min.css"; +import "@reach/menu-button/styles.css"; +import { FaDownload, FaUpload, FaUserPlus } from "react-icons/fa"; +import AddBox from '@material-ui/icons/AddBox'; +import ArrowUpward from '@material-ui/icons/ArrowUpward'; +import Check from '@material-ui/icons/Check'; +import ChevronLeft from '@material-ui/icons/ChevronLeft'; +import ChevronRight from '@material-ui/icons/ChevronRight'; +import ButtonGroup from "@material-ui/core/ButtonGroup"; +import Clear from '@material-ui/icons/Clear'; +import DeleteOutline from '@material-ui/icons/DeleteOutline'; +import Edit from '@material-ui/icons/Edit'; +import FilterList from '@material-ui/icons/FilterList'; +import FirstPage from '@material-ui/icons/FirstPage'; +import LastPage from '@material-ui/icons/LastPage'; +import Remove from '@material-ui/icons/Remove'; +import SaveAlt from '@material-ui/icons/SaveAlt'; +import Search from '@material-ui/icons/Search'; +import ViewColumn from '@material-ui/icons/ViewColumn'; +import { forwardRef } from "react"; +import MaterialTable from "material-table"; +import { useMutation, useQuery } from "react-query"; +import { fetchChartConfig } from "../../../_services/fetchChartConfig"; +import { toast } from "react-toastify"; +import { queryClient } from "../../../_helpers/queryClient"; +import { Button, Form, FormGroup, Label, Input } from "reactstrap"; +import { Formik, Field, ErrorMessage, useFormikContext } from 'formik'; +import * as Yup from 'yup'; +import ButtonMui from "@material-ui/core/Button"; +import { MdSaveAlt } from "react-icons/md"; +import "react-toastify/dist/ReactToastify.css"; +import "react-toastify/dist/ReactToastify.css"; +import "react-widgets/dist/css/react-widgets.css"; +import { updateChartConfig } from "../../../_services/updateChartConfig"; +import { deleteChartConfig } from "../../../_services/deleteChartConfig"; +import { exportChart } from "../../../_services/exportChartConfig"; +import { importCharts } from "../../../_services/importCharts"; + +const tableIcons = { + Add: forwardRef((props, ref) => ), + Check: forwardRef((props, ref) => ), + Clear: forwardRef((props, ref) => ), + Delete: forwardRef((props, ref) => ), + DetailPanel: forwardRef((props, ref) => ( + + )), + Edit: forwardRef((props, ref) => ), + Export: forwardRef((props, ref) => ), + Filter: forwardRef((props, ref) => ), + FirstPage: forwardRef((props, ref) => ), + LastPage: forwardRef((props, ref) => ), + NextPage: forwardRef((props, ref) => ), + PreviousPage: forwardRef((props, ref) => ( + + )), + ResetSearch: forwardRef((props, ref) => ), + Search: forwardRef((props, ref) => ), + SortArrow: forwardRef((props, ref) => ), + ThirdStateCheck: forwardRef((props, ref) => ), + ViewColumn: forwardRef((props, ref) => ), +}; + +const useStyles = makeStyles((theme) => ({ + button: { + margin: theme.spacing(1), + }, + errorText: { + color: 'red', + fontSize: '12px', + marginTop: '5px' + } +})); + + +const validationSchema = Yup.object().shape({ + indicatorName: Yup.string() + .required('Indicator Name is required') + .min(2, 'Indicator Name must be at least 2 characters'), + type: Yup.string() + .required('Type is required'), + description: Yup.string() + .required('Description is required') + .min(10, 'Description must be at least 10 characters'), + displayName: Yup.string() + .required('Display Name is required'), + module: Yup.string() + .required('Module is required'), + icon: Yup.string() + .required('Icon is required'), + position: Yup.number() + .required('Position is required') + .positive('Position must be a positive number') + .integer('Position must be an integer'), + location: Yup.string() + .required('Location is required') +}); + +const ChartConfigPage = (props) => { + const classes = useStyles(); + const fileInputRef = useRef(null); + + const [query, setQueryParams] = useState({ + page: 0, + pageSize: 10, + search: "", + }); + const [editModalOpen, setEditModalOpen] = useState(false); + const [deleteModalOpen, setDeleteModalOpen] = useState(false); + const [selectedItem, setSelectedItem] = useState(null); + + const [importing, setImporting] = useState(false); + const [importModalOpen, setImportModalOpen] = useState(false); + const [selectedFile, setSelectedFile] = useState(null); + + + const importMutation = useMutation(importCharts, { + onSuccess: () => { + queryClient.invalidateQueries(["FETCH_CHATS"]); + setImporting(false); + setImportModalOpen(false); + setSelectedFile(null); + }, + onError: () => { + setImporting(false); + } + }); + + const handleImportClick = () => { + setImportModalOpen(true); + }; + + const handleFileChange = (event) => { + const file = event.target.files[0]; + if (file) { + // Check if file is JSON + if (file.type !== "application/json" && !file.name.endsWith('.json')) { + toast.error("Please select a JSON file"); + return; + } + setSelectedFile(file); + } + }; + + const handleUpload = () => { + if (!selectedFile) { + toast.error("Please select a file first"); + return; + } + + setImporting(true); + importMutation.mutate(selectedFile); + }; + + + + const updateMutation = useMutation(updateChartConfig, { + onSuccess: () => { + queryClient.invalidateQueries(["FETCH_CHATS"]); + toast.success("Chart configuration updated successfully"); + setEditModalOpen(false); + }, + onError: (error) => { + const errorMessage = error.response?.data?.apierror?.message || "Something went wrong"; + toast.error(errorMessage); + } + }); + + const deleteMutation = useMutation(deleteChartConfig, { + onSuccess: () => { + queryClient.invalidateQueries(["FETCH_CHATS"]); + toast.success("Chart configuration deleted successfully"); + setDeleteModalOpen(false); + }, + onError: (error) => { + const errorMessage = error.response?.data?.apierror?.message || "Something went wrong"; + toast.error(errorMessage); + } + }); + + const handleEdit = (row) => { + setSelectedItem(row); + setEditModalOpen(true); + }; + + const handleDelete = (row) => { + setSelectedItem(row); + setDeleteModalOpen(true); + }; + + const handleEditSubmit = (values) => { + updateMutation.mutate({ + ...values, + indicatorName: selectedItem.indicatorName + }); + }; + + const handleDeleteConfirm = () => { + deleteMutation.mutate(selectedItem.indicatorName); + }; + + const prefetchNextPage = async () => { + const nextPage = query.page + 1; + const queryKey = ["FETCH_CHATS", { ...query, page: nextPage }]; + await queryClient.prefetchQuery(queryKey, () => + fetchChartConfig({ ...query, page: nextPage }) + ); + }; + + const { data, isLoading, refetch } = useQuery( + ["FETCH_CHATS", query], + () => fetchChartConfig(query), + { + onSuccess: () => { + prefetchNextPage(); + }, + onError: (error) => { + if (error.response && error.response.data) { + let errorMessage = + error.response.data.apierror && + error.response.data.apierror.message !== "" + ? error.response.data.apierror.message + : "Something went wrong, please try again"; + toast.error(errorMessage); + } else { + toast.error("Something went wrong. Please try again..."); + } + }, + } + ); + + + + + return ( +
+ + + + + + + setImportModalOpen(false)}> + Import Chart Configuration + +

Select a JSON file to import chart configurations:

+
+ + {selectedFile && ( +

+ Selected file: {selectedFile.name} +

+ )} +
+ + + { + setImportModalOpen(false); + setSelectedFile(null); + }} + color="primary" + disabled={importing} + > + Cancel + + + {importing ? 'Uploading...' : 'Upload'} + + + + + setEditModalOpen(false)} maxWidth="md" fullWidth> + + {({ handleSubmit, handleChange, handleBlur, values, errors, touched, submitForm }) => ( + <> + Edit Chart Configuration + + + + + setEditModalOpen(false)} color="primary"> + Cancel + + + {updateMutation.isLoading ? 'Updating...' : 'Save Changes'} + + + + )} + + + + setDeleteModalOpen(false)}> + Confirm Delete + +

Are you sure you want to delete the chart configuration for "{selectedItem?.indicatorName}"?

+

This action cannot be undone.

+ + + setDeleteModalOpen(false)} color="primary"> + Cancel + + + {deleteMutation.isLoading ? 'Deleting...' : 'Delete'} + + + + + + +
+ } + onClick={handleImportClick} + disable={importing} + style={{ backgroundColor: '#014d88', margin: '10px' }} + > + + Import config + + + + } + onClick={exportChart} + style={{ backgroundColor: '#014d88', margin: '10px' }} + > + Export config + +
+ + +
+ ( +
+ + handleEdit(row)} + style={{ marginRight: '5px', backgroundColor: '#1976d2' }} + > + + Edit + + handleDelete(row)} + style={{ backgroundColor: '#d32f2f' }} + > + + Delete + + +
+ ) + } + ]} + data={data} + isLoading={isLoading} + options={{ + headerStyle: { + backgroundColor: "#014d88", + color: "#fff", + }, + searchFieldStyle: { + width: "200%", + margingLeft: "250px", + }, + filtering: false, + paging: true, + exportButton: false, + searchFieldAlignment: "left", + pageSizeOptions: [10, 20, 100], + pageSize: query?.pageSize || 10, + debounceInterval: 400, + }} + totalCount={data?.length} + onChangePage={(newPage) => { + setQueryParams((prevFilters) => ({ ...prevFilters, page: newPage })); + refetch(query); + }} + onSearchChange={(searchTerm) => { + setQueryParams((prevFilters) => ({ ...prevFilters, page: 0, pageSize: 10, search: searchTerm })); + refetch(query); + }} + onChangeRowsPerPage={(newPageSize) => { + setQueryParams((prevFilters) => ({ + ...prevFilters, + pageSize: newPageSize, + })); + refetch(query); + }} + /> +
+ + +
+ ); +}; + +export default ChartConfigPage; + + + + +const ChartConfigForm = React.forwardRef(({ handleSubmit, values, errors, touched, handleChange, handleBlur }, ref) => { + const classes = useStyles(); + + return ( +
+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
+ ); +}); diff --git a/starter-module/src/main/webapp/jsx/components/Dashboard/ChartErrorBoundary/ChartErrorBoundary.js b/starter-module/src/main/webapp/jsx/components/Dashboard/ChartErrorBoundary/ChartErrorBoundary.js new file mode 100644 index 00000000..6d024464 --- /dev/null +++ b/starter-module/src/main/webapp/jsx/components/Dashboard/ChartErrorBoundary/ChartErrorBoundary.js @@ -0,0 +1,49 @@ +import React from 'react'; + +class ChartErrorBoundary extends React.Component { + constructor(props) { + super(props); + this.state = { + hasError: false, + error: null, + errorInfo: null + }; + } + + static getDerivedStateFromError(error) { + return { hasError: true }; + } + + componentDidCatch(error, errorInfo) { + this.setState({ + error: error, + errorInfo: errorInfo + }); + console.error('Error caught by boundary:', error, errorInfo); + } + + render() { + if (this.state.hasError) { + return ( +
+

Something went wrong.

+
+ {this.state.error && this.state.error.toString()} +
+ {this.state.errorInfo.componentStack} +
+
+ ); + } + + return this.props.children; + } +} + +export default ChartErrorBoundary; \ No newline at end of file diff --git a/starter-module/src/main/webapp/jsx/components/Dashboard/Home.js b/starter-module/src/main/webapp/jsx/components/Dashboard/Home.js index 738576fc..aee0aedb 100644 --- a/starter-module/src/main/webapp/jsx/components/Dashboard/Home.js +++ b/starter-module/src/main/webapp/jsx/components/Dashboard/Home.js @@ -1,341 +1,244 @@ -import React, { useState, useContext, useEffect } from "react"; -import { Link } from "react-router-dom"; -import { Dropdown, Spinner } from "react-bootstrap"; -import { useSelector, useDispatch } from "react-redux"; -import { url as baseUrl, url, token } from "../../../api"; -import axios from "axios"; +import React, { useMemo } from "react"; +import { Spinner } from "react-bootstrap"; +import { useQuery, useQueries } from "react-query"; import Pie from "../charts/Pie"; import LineGraph from "../charts/LineGraph"; - -//Import -import { ThemeContext } from "../../../context/ThemeContext"; import GeneralSummaryView from "./GeneralSummaryView"; -import { TabContext, TabList, TabPanel } from "@material-ui/lab"; -import { systemSettingsHelper } from "../../../_services/SystemSettingsHelper"; -import { authentication } from "../../../_services/authentication"; +import { TabContext, TabPanel } from "@material-ui/lab"; +import { fetchInstanceSetting } from "../../../_services/fetchInstanceSetting"; +import { fetchChartData } from "../../../_services/fetchChartData"; +import { fetchIndicatorValues } from "../../../_services/fetchIndicatorValues"; +import { fetchCurrentOrganisationUnitId } from "../../../_services/fetchCurrentOrganisationUnitId"; +import BarGraph from "../charts/BarGraph"; +import ChartErrorBoundary from "./ChartErrorBoundary/ChartErrorBoundary"; + + const Home = () => { - const listOfAllModule = useSelector((state) => state.boostrapmodule.list); - const instance = systemSettingsHelper.getSingleSystemSetting("instance") - const [isServerInstance, setIsServerInstance] = useState(true); const [value, setValue] = React.useState("2"); - const [loading, setLoading] = useState(true); - const [dashboardDataLoading, setDashboardDataLoading] = useState(false); - const [patientCount, setPatientCount] = useState(0); - const [patientBiometricCount, setPatientBiometricCount] = useState(0); - const [patientNoBiometricCount, setPatientNoBiometricCount] = useState(0); - const [sexCount, setSexCount] = useState([]); + const { data: instance, isLoading: instanceLoading } = useQuery( + "instanceSetting", + fetchInstanceSetting, + { + staleTime: Infinity, + } + ); - const [sexYearCount, setSexYearCount] = useState([]); + const { data: currentOrganisationUnitId } = useQuery( + "currentOrganisationUnitId", + fetchCurrentOrganisationUnitId, + { + enabled: !instanceLoading, + } + ); - const handleTabsChange = (event, newValue) => { - setValue(newValue); - }; - const { changeBackground, background } = useContext(ThemeContext); + const { data: chartData, isLoading: chartDataLoading } = useQuery( + "chartIndicators", + fetchChartData, + { + enabled: !instanceLoading && !!currentOrganisationUnitId, + } + ); - const getPatientCount = () => { - axios - .get(`${url}patient?searchParam=*&pageNo=0&pageSize=10`, { - headers: { Authorization: `Bearer ${token}` }, - }) - .then((response) => { - if (typeof(response.data) === 'object'){ - setPatientCount(response.data) - } - }); - }; + const indicatorValuesQueries = useQueries( + chartData?.map((indicator) => ({ + queryKey: ["indicatorValue", indicator.indicatorName, currentOrganisationUnitId], + queryFn: () => fetchIndicatorValues(indicator, currentOrganisationUnitId), + enabled: !!chartData && !!currentOrganisationUnitId, + })) || [] + ); - const getPatientWithBiometricsCount = () => { - axios - .get( - `${url}patient/getall-patients-with-biometric?searchParam=*&pageNo=0&pageSize=10`, - { - headers: { Authorization: `Bearer ${token}` }, - } - ) - .then((response) => { - if (typeof(response.data) === 'object'){ - setPatientBiometricCount(response.data) - } - }); - }; - - const getPatientWithNoBiometricsCount = () => { - axios - .get( - `${url}patient/getall-patients-with-no-biometric?searchParam=*&pageNo=0&pageSize=10`, - { - headers: { Authorization: `Bearer ${token}` }, - } - ) - .then((response) => { - if (typeof(response.data) === 'object'){ - setPatientNoBiometricCount(response.data); - } - }); - }; - - const getSexCount = () => { - axios - .get(`${url}patient/count-by-sex`, { - headers: { Authorization: `Bearer ${token}` }, - }) - .then((response) => { - if (typeof(response.data) === 'object'){ - setSexCount(response.data); - } - }) - .catch((error) => { - console.log(error) - setSexCount([]); - }); - }; - - const getSexYearCount = () => { - axios - .get(`${url}patient/count-by-year-and-sex`, { - headers: { Authorization: `Bearer ${token}` }, - }) - .then((response) => { - if (typeof(response.data) === 'object'){ - const sortByYear = (a, b) => { - return a.year - b.year; - }; - - setSexYearCount( - response.data.sort(sortByYear).filter((entry) => entry.year >= 2010) - ); - } - }) - // .then((response) => { - // const sortByYear = (a, b) => { - // return a.year - b.year; - // }; + const groupedIndicators = useMemo(() => { + const groups = { line: [], pie: [], column: [], card: [] }; - // setSexYearCount( - // response.data.sort(sortByYear).filter((entry) => entry.year >= 2010) - // ); - // }) - .catch((error) => { - console.log(error); - setSexYearCount([]); + if (chartData && indicatorValuesQueries.every(query => query.isSuccess)) { + chartData.forEach((indicator, index) => { + const value = indicatorValuesQueries?.[index]?.data; + const updatedIndicator = { ...indicator, data: value }; + groups[updatedIndicator?.type]?.push?.(updatedIndicator); }); - }; - - const fetchDashboardData = () =>{ - setDashboardDataLoading(true); - getPatientCount(); - getPatientWithBiometricsCount(); - getPatientWithNoBiometricsCount(); - getSexCount(); - getSexYearCount(); - setDashboardDataLoading(false); - } - - // useEffect(() => { - // changeBackground({ value: "light", label: "Light" }); - - // if (listOfAllModule) { - // if (listOfAllModule.length > 0) { - // listOfAllModule.map((item) => { - // if (item.name === "ServerSyncModule") { - // setIsServerInstance(true); - // } - // }); - // } - // setLoading(false); - // } - // // if (!patientCount?.totalRecords) { - // // getPatientCount(); - // // } - - // // if (!patientBiometricCount?.totalRecords) { - // // getPatientWithBiometricsCount(); - // // } + } - // // if (!patientNoBiometricCount?.totalRecords) { - // // getPatientWithNoBiometricsCount(); - // // } + return groups; + }, [chartData, indicatorValuesQueries]); - // // if (!sexCount[0]?.name) { - // // getSexCount(); - // // } + const isServerInstance = instance?.value === "1"; - // // if (!sexYearCount[0]?.year) { - // // getSexYearCount(); - // // } - - // }, [listOfAllModule]); - useEffect(async ()=> { - if (instance !== null && instance !== undefined) { - const serverInstance = instance.value === "1" - setIsServerInstance(serverInstance) - setLoading(false) - } else { - await systemSettingsHelper.fetchAllSystemSettings() - const newInstance = systemSettingsHelper.getSingleSystemSetting("instance") - const newServerInstance = newInstance.value === "1" - setIsServerInstance(newServerInstance) - setLoading(false) + const isAnyQueryLoading = instanceLoading || + chartDataLoading || + indicatorValuesQueries.some(query => query.isLoading); - } - setLoading(false) - },[instance]) - useEffect(() => { - fetchDashboardData(); - }, []); + const hasNoChartData = !isAnyQueryLoading && + Object.values(groupedIndicators).every(arr => arr.length === 0); return ( - <> - {(!loading && !dashboardDataLoading) ? ( + + {isAnyQueryLoading ? ( +
+ +
+ ) : ( <> {isServerInstance ? ( - {/* - - - - - */} - {/* -
-
-
- -
-
-
- */} ) : ( -
-
+ <> + {groupedIndicators?.card?.length > 0 && (
- {/* */} -
-
-
-
-
-
-
-

- {patientCount?.totalRecords} -

-
-
- - - -
-
-
-

- Total Patients -

-
+ {groupedIndicators?.card + ?.sort?.((a, b) => a.position - b.position) + ?.map?.((indicator) => ( +
+ + +
-
-
-
-
-
-

- {patientBiometricCount?.totalRecords} -

-
- - - -
-
-

- Patients With Biometrics -

-
-
-
-
-
-
-
-

- {patientNoBiometricCount?.totalRecords} -

-
- - - + ))} +
+ )} + +
+ {groupedIndicators?.pie?.length > 0 && ( + <> + {groupedIndicators?.pie + .sort((a, b) => a.position - b.position) + .map((indicator) => ( +
+ + + + +
-
-

- Patients with no Biometrics -

+ ))} + + )} + + {groupedIndicators?.line?.length > 0 && ( + <> + {groupedIndicators?.line + .sort((a, b) => a.position - b.position) + .map((indicator) => ( +
+ + + + +
-
-
-
-
-
-
-
- + ))} + + )} + + {groupedIndicators?.column?.length > 0 && ( + <> + {groupedIndicators?.column + .sort((a, b) => a.position - b.position) + .map((indicator) => ( +
+ + + + +
-
-
-
-
-
- -
-
-
-
-
+ ))} + + )} + +
+ + + + + + +
+ {hasNoChartData && }
-
+ )} - ) : ( -
- -
)} - + ); }; -export default Home; + +const IndicatorCard = ({ indicator }) => ( +
+
+
+

{indicator.data}

+
+
+ +
+
+
+
{indicator.displayName}
+
+
+); + +const ChartContainer = ({ children }) => ( +
+
+
{children}
+
+
+); + +const NoDataPlaceholder = () => ( +
+ + + + + No Chart Data Found. Kindly contact admin + +
+); + +export default Home; \ No newline at end of file diff --git a/starter-module/src/main/webapp/jsx/components/Roles/AddRole.js b/starter-module/src/main/webapp/jsx/components/Roles/AddRole.js index 08739960..b7f07bcb 100644 --- a/starter-module/src/main/webapp/jsx/components/Roles/AddRole.js +++ b/starter-module/src/main/webapp/jsx/components/Roles/AddRole.js @@ -79,7 +79,9 @@ const AddRole = (props) => { const [permissions, setPermissions] = useState([]); const [selectedPermissions, setselectedPermissions] = useState([]); const [menList, setMenuList] = useState([]) + const [roles, setRoles] = useState([]) const [selectedMenuList, setselectedMenuList] = useState([]); + const [excludeRolesList, setExcludeRolesList] = useState([]); const [saving, setSaving] = useState(false); /* Get list of Permissions from the server */ @@ -124,6 +126,26 @@ const AddRole = (props) => { getMenus(); }, []); + + useEffect(() => { + async function getRoles() { + axios + .get(`${baseUrl}roles`) + .then((response) => { + const excludeRolesFiltered = Object.entries(response.data).map(([key, value]) => ({ + label: value.name, + value: value.id.toString(), + })) + setRoles(excludeRolesFiltered) + }) + .catch((error) => { + //console.log(error); + }); + } + + getRoles(); + }, []); + const onPermissionSelect = (selectedValues) => { setselectedPermissions(selectedValues); }; @@ -131,6 +153,10 @@ const AddRole = (props) => { setselectedMenuList(selectedValues); }; + const onExcludeRolesSelect = (selectedValues) => { + setExcludeRolesList(selectedValues); + }; + const handleSubmit = (e) => { e.preventDefault(); //get list of selected permissions with the name @@ -149,6 +175,7 @@ const AddRole = (props) => { }); values["permissions"] = permissions; values["menus"] = menuItems; + values["excludeRoles"] = excludeRolesList.join(","); setSaving(true); const onSuccess = () => { setSaving(false); @@ -220,7 +247,7 @@ const AddRole = (props) => {
- + { /> +
+ + + + + + {saving ? : ""}
diff --git a/starter-module/src/main/webapp/jsx/components/Roles/EditRole.js b/starter-module/src/main/webapp/jsx/components/Roles/EditRole.js index 983196ac..aac7d972 100644 --- a/starter-module/src/main/webapp/jsx/components/Roles/EditRole.js +++ b/starter-module/src/main/webapp/jsx/components/Roles/EditRole.js @@ -19,7 +19,7 @@ import { ToastContainer, toast } from "react-toastify"; import "react-toastify/dist/ReactToastify.css"; import "react-widgets/dist/css/react-widgets.css"; import { connect } from "react-redux"; -import { updateRole } from "./../../../actions/role"; +import { fetchRoles, updateRole } from "./../../../actions/role"; import { url as baseUrl } from "./../../../api"; import useForm from "./../Functions/UseForm"; import { Spinner } from "reactstrap"; @@ -72,17 +72,21 @@ const useStyles = makeStyles((theme) => ({ })); const AddRole = (props) => { - console.log(props.location.state.row) const classes = useStyles(); const { values, setValues, handleInputChange, resetForm } = useForm({ + id: props.location && props.location.state.row ? props.location.state.row.id : "", name: props.location && props.location.state.row ? props.location.state.row.name : "", permissions: props.location && props.location.state.row ? props.location.state.row.permission :[], menus:props.location && props.location.state.row ? props.location.state.row.menu :[], + excludeRoles:props.location && props.location.state.row && props.location.state.row.excludeRoles !== null + ? props.location.state.row.excludeRoles.split(",") :[], }); const [permissions, setPermissions] = useState([]); const [selectedPermissions, setselectedPermissions] = useState([]); const [menList, setMenuList] = useState([]) + const [roles, setRoles] = useState([]) const [selectedMenuList, setselectedMenuList] = useState([]); + const [excludeRolesList, setExcludeRolesList] = useState([]); const [saving, setSaving] = useState(false); useEffect(() => { @@ -101,7 +105,6 @@ const AddRole = (props) => { axios .get(`${baseUrl}permissions`) .then((response) => { - console.log(Object.entries(response.data)); setPermissions( Object.entries(response.data).map(([key, value]) => ({ label: value.description, @@ -121,7 +124,6 @@ const AddRole = (props) => { axios .get(`${baseUrl}menus?withChild=true`) .then((response) => { - //console.log(response.data) setMenuList( Object.entries(response.data).map(([key, value]) => ({ label: value.name, @@ -131,18 +133,51 @@ const AddRole = (props) => { //menuobj = menList }) .catch((error) => { - //console.log(error); + // console.error(error); }); } + getMenus(); }, []); + useEffect(() => { + async function getRoles() { + axios + .get(`${baseUrl}roles`) + .then((response) => { + const excludeRolesFiltered = Object.entries(response.data).map(([key, value]) => ({ + label: value.name, + value: value.id.toString(), + })).filter((each) => each.value !== values.id.toString()) + setRoles(excludeRolesFiltered) + + const currentSelectedExcludeRoles = + props.location && props.location.state.row && props.location.state.row.excludeRoles !== null + ? props.location.state.row.excludeRoles.split(",") : [] + + setExcludeRolesList(currentSelectedExcludeRoles); + + + }) + .catch((error) => { + // console.error(error); + }); + } + + getRoles(); + }, []); + + const onPermissionSelect = (selectedValues) => { setselectedPermissions(selectedValues); }; const onMenuItemSelect = (selectedValues) => { setselectedMenuList(selectedValues); }; + const onExcludeRolesSelect = (selectedValues) => { + setExcludeRolesList(selectedValues); + }; + const handleSubmit = (e) => { e.preventDefault(); let permissions = []; @@ -161,6 +196,7 @@ const AddRole = (props) => { }); values["permissions"] = permissions; values["menus"] = menuItems; + values["excludeRoles"] = excludeRolesList.join(","); setSaving(true); const onSuccess = () => { setSaving(false); @@ -232,7 +268,7 @@ const AddRole = (props) => {
- + { /> +
+ + + + + + {saving ? : ""}
@@ -282,5 +330,9 @@ const mapStateToProps = (state) => ({ //role: state.roles.role, role: [], }); +const mapActionToProps = { + fetchAllRoles: fetchRoles, + updateRole: updateRole +}; -export default connect(mapStateToProps, { updateRole })(AddRole); +export default connect(mapStateToProps, mapActionToProps)(AddRole); diff --git a/starter-module/src/main/webapp/jsx/components/Roles/RolesList.js b/starter-module/src/main/webapp/jsx/components/Roles/RolesList.js index 906aa2db..966c14ee 100644 --- a/starter-module/src/main/webapp/jsx/components/Roles/RolesList.js +++ b/starter-module/src/main/webapp/jsx/components/Roles/RolesList.js @@ -152,7 +152,9 @@ const fetchRole =()=>{ { title: "Actions", field: "actions", filtering: false }, ]} isLoading={loading} - data={props.rolesList.map((row) => ({ + data={props.rolesList + .sort((a,b) => a.name.localeCompare(b.name)) + .map((row) => ({ id: row.id, name: row.name, diff --git a/starter-module/src/main/webapp/jsx/components/Users/EditUser.js b/starter-module/src/main/webapp/jsx/components/Users/EditUser.js index 5c65a00a..36f3058b 100644 --- a/starter-module/src/main/webapp/jsx/components/Users/EditUser.js +++ b/starter-module/src/main/webapp/jsx/components/Users/EditUser.js @@ -93,13 +93,15 @@ const UserRegistration = (props) => { ); const [gender, setGender] = useState([]); const [role, setRole] = useState([]); + const [exclusionSet, setExclusionSet] = useState(new Set()); + const [filteredRoles, setFilteredRoles] = useState([]); const [confirm, setConfirm] = useState(null); const [matchingPassword, setMatchingPassword] = useState(false); const [validPassword, setValidPassword] = useState(false); const [matchingPasswordClass, setMatchingPasswordClass] = useState(""); const [validPasswordClass, setValidPasswordClass] = useState(""); const [saving, setSaving] = useState(false); - const [selectedOption, setSelectedOption] = useState(props.location.state.user.roles); + const [selectedRoles, setSelectedRoles] = useState(props.location.state.user.roleIds); const [setArr, setSetArr] = useState([]); const [designation, setDesignation] = useState([]); const [loadingFacilities, setLoadingFacilities] = useState(false); @@ -173,7 +175,9 @@ const UserRegistration = (props) => { Object.entries(response.data).map(([key, value]) => ({ label: value.name, value: value.name, - })) + excludeRoles: value.excludeRoles, + id: value.id, + })).sort((a,b) => a.value.localeCompare(b.value)) ); }) .catch((error) => { @@ -202,8 +206,8 @@ const UserRegistration = (props) => { }, [props.location.state.isUpdate]) - const onPermissionSelect = (selectedValues) => { - setSelectedOption(selectedValues); + const onRoleSelect = (selectedValues) => { + setSelectedRoles(selectedValues); }; const onOrganisationSelect = (selectedValues) => { setSelectedOrganisations(selectedValues); @@ -307,7 +311,7 @@ const UserRegistration = (props) => { if (validate()) { const dateOfBirth = moment(values.dateOfBirth).format("YYYY-MM-DD"); values["dateOfBirth"] = dateOfBirth; - values["roles"] = selectedOption + values["roles"] = selectedRoles values["facilityIds"] = selectedOrganisations setSaving(true); const onSuccess = () => { @@ -326,6 +330,44 @@ const UserRegistration = (props) => { } }; + useEffect(() => { + const filtered = role.filter( + role => !exclusionSet.has(parseInt(role.id)) || selectedRoles.includes(role.id.toString()) + ); + const formatted = filtered.map(role => ({ + value: role.id, + label: role.label, + })); + + setFilteredRoles(formatted); + // }, [exclusionSet, selectedRoles, role]); + }, [exclusionSet, role]); + // Handle selection changes + const handleRoleChange = (newSelected) => { + console.log("roles: ", role); + console.log("filtered: ", filteredRoles); + console.log("excluded: ", exclusionSet); + + const newExclusions = new Set(); + + // Build new exclusion list from selected roles + newSelected.forEach(id => { + const thisRole = role.find(r => r.id === id); + if (thisRole?.excludeRoles) { + thisRole.excludeRoles + .split(',') + .map(str => parseInt(str.trim())) + .forEach(exId => newExclusions.add(exId)); + } + }); + + // Remove any roles from selection that are now excluded + const cleanedSelection = newSelected.filter(id => !newExclusions.has(id)); + + setSelectedRoles(cleanedSelection); + setExclusionSet(newExclusions); + }; + return ( @@ -539,7 +581,7 @@ const UserRegistration = (props) => {
- + {!loadingFacilities ? ( {
- + @@ -602,8 +646,13 @@ const UserRegistration = (props) => { color="primary" className={classes.button} startIcon={} - disabled={!(validPassword && matchingPassword) || isView} - style={{backgroundColor: isView ? "grey" : '#014d88',color:'#fff'}} + disabled={saving || !(validPassword && matchingPassword) + || !(values.firstName && values.lastName && values.designation + && values.userName && values.phoneNumber && values.email) } + style={{ backgroundColor: (saving || !(validPassword && matchingPassword) + || !(values.firstName && values.lastName && values.designation + && values.userName && values.phoneNumber && values.email)) + ? 'grey' : '#014d88', color: '#fff' }} > {!saving ? ( Save diff --git a/starter-module/src/main/webapp/jsx/components/Users/UserList.js b/starter-module/src/main/webapp/jsx/components/Users/UserList.js index 6daa2f42..98e41167 100644 --- a/starter-module/src/main/webapp/jsx/components/Users/UserList.js +++ b/starter-module/src/main/webapp/jsx/components/Users/UserList.js @@ -10,18 +10,18 @@ import { ToastContainer, toast } from "react-toastify"; import SaveIcon from "@material-ui/icons/Save"; import CancelIcon from "@material-ui/icons/Cancel"; import MatButton from "@material-ui/core/Button"; -import { Badge} from "react-bootstrap"; +import { Badge } from "react-bootstrap"; import { makeStyles } from "@material-ui/core/styles"; import "react-toastify/dist/ReactToastify.css"; import "react-widgets/dist/css/react-widgets.css"; import AssignFacilityModal from "./AssignFacilityModal"; import { forwardRef } from 'react'; -import { Modal } from "react-bootstrap"; -import { Icon, Label} from 'semantic-ui-react'; +import { Modal } from "react-bootstrap"; +import { Icon, Label } from 'semantic-ui-react'; import 'semantic-ui-css/semantic.min.css'; -import {Link, useHistory} from 'react-router-dom' -import { Button} from "react-bootstrap"; +import { Link, useHistory } from 'react-router-dom' +import { Button } from "react-bootstrap"; import AddBox from '@material-ui/icons/AddBox'; import ArrowUpward from '@material-ui/icons/ArrowUpward'; @@ -38,28 +38,28 @@ import Remove from '@material-ui/icons/Remove'; import SaveAlt from '@material-ui/icons/SaveAlt'; import Search from '@material-ui/icons/Search'; import ViewColumn from '@material-ui/icons/ViewColumn'; -import {FaEye} from "react-icons/fa"; -import {MdModeEdit, MdPerson} from "react-icons/md"; +import { FaEye } from "react-icons/fa"; +import { MdModeEdit, MdPerson } from "react-icons/md"; import SplitActionButton from "../Button/SplitActionButton"; const tableIcons = { -Add: forwardRef((props, ref) => ), -Check: forwardRef((props, ref) => ), -Clear: forwardRef((props, ref) => ), -Delete: forwardRef((props, ref) => ), -DetailPanel: forwardRef((props, ref) => ), -Edit: forwardRef((props, ref) => ), -Export: forwardRef((props, ref) => ), -Filter: forwardRef((props, ref) => ), -FirstPage: forwardRef((props, ref) => ), -LastPage: forwardRef((props, ref) => ), -NextPage: forwardRef((props, ref) => ), -PreviousPage: forwardRef((props, ref) => ), -ResetSearch: forwardRef((props, ref) => ), -Search: forwardRef((props, ref) => ), -SortArrow: forwardRef((props, ref) => ), -ThirdStateCheck: forwardRef((props, ref) => ), -ViewColumn: forwardRef((props, ref) => ) + Add: forwardRef((props, ref) => ), + Check: forwardRef((props, ref) => ), + Clear: forwardRef((props, ref) => ), + Delete: forwardRef((props, ref) => ), + DetailPanel: forwardRef((props, ref) => ), + Edit: forwardRef((props, ref) => ), + Export: forwardRef((props, ref) => ), + Filter: forwardRef((props, ref) => ), + FirstPage: forwardRef((props, ref) => ), + LastPage: forwardRef((props, ref) => ), + NextPage: forwardRef((props, ref) => ), + PreviousPage: forwardRef((props, ref) => ), + ResetSearch: forwardRef((props, ref) => ), + Search: forwardRef((props, ref) => ), + SortArrow: forwardRef((props, ref) => ), + ThirdStateCheck: forwardRef((props, ref) => ), + ViewColumn: forwardRef((props, ref) => ) }; const useStyles = makeStyles((theme) => ({ @@ -72,7 +72,7 @@ let userId = 0; let currentUser = {}; const UserList = (props) => { - let history = useHistory(); + let history = useHistory(); const classes = useStyles(); const [loading, setLoading] = useState(true); const [modal, setModal] = useState(false); @@ -83,8 +83,8 @@ const UserList = (props) => { useEffect(() => { fetchUsers() }, []); - const handleClose = () => setModal(false); - const fetchUsers = ()=> { + const handleClose = () => setModal(false); + const fetchUsers = () => { const onSuccess = () => { setLoading(false); }; @@ -131,43 +131,43 @@ const UserList = (props) => { //toast.error("Something went wrong"); return; }; - props.deleteUser(id, onSuccess,onError); - - + props.deleteUser(id, onSuccess, onError); + + }; - function actionItems(row){ - return [ - { - type:'link', - name:'View', - icon:, - to:{ - pathname: "/edit-user", - state: { user: row, defRole: roles, isUpdate: false } - } - }, - { - type:'link', - name:'Edit', - icon:, - to:{ - pathname: "/edit-user", - state: { user: row, defRole: roles, isUpdate: true } - } - }, - { - type:'button', - name:'Delete', - icon:, - onClick:(() => deleteUserModal( row.id)) - } - ] - } + function actionItems(row) { + return [ + { + type: 'link', + name: 'View', + icon: , + to: { + pathname: "/edit-user", + state: { user: row, defRole: roles, isUpdate: false } + } + }, + { + type: 'link', + name: 'Edit', + icon: , + to: { + pathname: "/edit-user", + state: { user: row, defRole: roles, isUpdate: true } + } + }, + { + type: 'button', + name: 'Delete', + icon: , + onClick: (() => deleteUserModal(row.id)) + } + ] + } return (
{ data={props.usersList.map((row) => ({ name: row.firstName + " " + row.lastName, userName: row.userName, - //gender: row.gender, - designation: ( {row.designation}), + designation: ({row.designation}), actions: (
- -{/* - - - */} - - +
), }))} options={{ - headerStyle: { - zIndex:'3', - backgroundColor: "#014d88", - color: "#fff", - fontSize:'16px', - padding:'10px' - }, + headerStyle: { + zIndex: '3', + backgroundColor: "#014d88", + color: "#fff", + fontSize: '16px', + padding: '10px' + }, searchFieldStyle: { width: "300%", margingLeft: "250px", @@ -217,47 +205,47 @@ const UserList = (props) => { searchFieldAlignment: "left", }} /> - + + + + Delete User + + + +

Are you sure you want to delete User

+ + + } - - - -

Are you sure you want to delete User

- - - } - - onClick={() => onDelete(userId)} - > + onClick={() => onDelete(userId)} + > Yes - - } - onClick={() => setModal(false)} - > - - Cancel - - - - + + } + onClick={() => setModal(false)} + > + + Cancel + + + + setAssignFacilityModal(!assignFacilityModal)} user={currentUser}/> + showModal={assignFacilityModal} toggleModal={() => setAssignFacilityModal(!assignFacilityModal)} user={currentUser} />
); }; diff --git a/starter-module/src/main/webapp/jsx/components/Users/UserPage.js b/starter-module/src/main/webapp/jsx/components/Users/UserPage.js index 40c77017..fec992a7 100644 --- a/starter-module/src/main/webapp/jsx/components/Users/UserPage.js +++ b/starter-module/src/main/webapp/jsx/components/Users/UserPage.js @@ -5,12 +5,9 @@ import { Card, CardContent } from "@material-ui/core"; import { FaUserPlus } from "react-icons/fa"; import { makeStyles } from "@material-ui/core/styles"; import UserList from "./UserList"; -//import FilteringTable from "./FilteringTable/FilteringTable" import PageTitle from "./../../layouts/PageTitle"; -//import UiModal from "./modaltest" import { ToastContainer} from "react-toastify"; import "react-toastify/dist/ReactToastify.css"; -import CancelIcon from "@material-ui/icons/Cancel"; const useStyles = makeStyles((theme) => ({ card: { diff --git a/starter-module/src/main/webapp/jsx/components/Users/UserRegistration.js b/starter-module/src/main/webapp/jsx/components/Users/UserRegistration.js index 6a698dab..01b4c7c9 100644 --- a/starter-module/src/main/webapp/jsx/components/Users/UserRegistration.js +++ b/starter-module/src/main/webapp/jsx/components/Users/UserRegistration.js @@ -104,13 +104,15 @@ const UserRegistration = (props) => { //const [gender, setGender] = useState([]); const [role, setRole] = useState([]); + const [exclusionSet, setExclusionSet] = useState(new Set()); + const [filteredRoles, setFilteredRoles] = useState([]); const [confirm, setConfirm] = useState(""); const [matchingPassword, setMatchingPassword] = useState(false); const [validPassword, setValidPassword] = useState(false); const [matchingPasswordClass, setMatchingPasswordClass] = useState(""); const [validPasswordClass, setValidPasswordClass] = useState(""); const [saving, setSaving] = useState(false); - const [selectedOption, setSelectedOption] = useState(); + const [selectedRoles, setSelectedRoles] = useState([]); const [designation, setDesignation] = useState([]); const [ips, setIps] = useState([]); const [loadingFacilities, setLoadingFacilities] = useState(false); @@ -227,12 +229,21 @@ const UserRegistration = (props) => { axios .get(`${baseUrl}account/roles`) .then((response) => { - //console.log(response.data) + // console.log(response.data) + // const rolesConverted = Object.entries(response.data).map(([key, value]) => ({ + // label: value.name, + // value: value.name, + // })) + // .sort((a,b) => a.value.localeCompare(b.value)) + // console.log(rolesConverted) setRole( Object.entries(response.data).map(([key, value]) => ({ - label: value.name, - value: value.name, - })) + label: value.name, + value: value.name, + excludeRoles: value.excludeRoles, + id: value.id, + })) + .sort((a,b) => a.value.localeCompare(b.value)) ); }) @@ -303,28 +314,6 @@ const UserRegistration = (props) => { // check if password and confirm password match handleConfirmPassword(e, false); }; - // const updateUserOrganisations=(userId)=>{ - // if(selectedOrganisations.length >0){ - // //Add Organisations - // let facilityDetails = []; - // selectedOrganisations.map((organisation) =>{ - // var orgDetails = _.find(allOrganisations, {name:organisation}); - // facilityDetails.push({ - // "applicationUserId": userId, - // "organisationUnitId": orgDetails.id - // }) - - // }); - // axios.post(`${baseUrl}application_user_organisation_unit`, facilityDetails) - // .then(response => { - // toast.success(`successfully added`); - // }) .catch((error) => { - // toast.error(`An error occurred, adding facility`); - // }); - // return true; - // } - // return false; - // } const validate = () => { let temp = { ...errors }; @@ -358,7 +347,7 @@ const UserRegistration = (props) => { if (validate()) { const dateOfBirth = moment(values.dateOfBirth).format("YYYY-MM-DD"); values["dateOfBirth"] = dateOfBirth; - values["roles"] = selectedOption + values["roles"] = selectedRoles values["facilityIds"] = selectedOrganisations setSaving(); @@ -378,8 +367,8 @@ const UserRegistration = (props) => { } }; - const onPermissionSelect = (selectedValues) => { - setSelectedOption(selectedValues); + const onRoleSelect = (selectedValues) => { + setSelectedRoles(selectedValues); }; const onOrganisationSelect = (selectedValues) => { setSelectedOrganisations(selectedValues); @@ -397,6 +386,42 @@ const handleInputChangePhoneNumber = (e) => { }; +useEffect(() => { + const filtered = role.filter( + role => !exclusionSet.has(parseInt(role.id)) || selectedRoles.includes(role.id.toString()) + ); + const formatted = filtered.map(role => ({ + value: role.id, + label: role.label, + })); + + setFilteredRoles(formatted); + // }, [exclusionSet, selectedRoles, role]); + }, [exclusionSet, role]); + + // Handle selection changes + const handleRoleChange = (newSelected) => { + + const newExclusions = new Set(); + + // Build new exclusion list from selected roles + newSelected.forEach(id => { + const thisRole = role.find(r => r.id === id); + if (thisRole?.excludeRoles) { + thisRole.excludeRoles + .split(',') + .map(str => parseInt(str.trim())) + .forEach(exId => newExclusions.add(exId)); + } + }); + + // Remove any roles from selection that are now excluded + const cleanedSelection = newSelected.filter(id => !newExclusions.has(id)); + + setSelectedRoles(cleanedSelection); + setExclusionSet(newExclusions); + }; + return ( <> @@ -620,7 +645,7 @@ const handleInputChangePhoneNumber = (e) => {
}
- + {!loadingFacilities ? ( {
- + @@ -658,8 +685,13 @@ const handleInputChangePhoneNumber = (e) => { color="primary" className={classes.button} startIcon={} - disabled={saving || !(validPassword && matchingPassword)} - style={{ backgroundColor: '#014d88', color: '#fff' }} + disabled={saving || !(validPassword && matchingPassword) + || !(values.firstName && values.lastName && values.designation + && values.userName && values.phoneNumber && values.email) } + style={{ backgroundColor: (saving || !(validPassword && matchingPassword) + || !(values.firstName && values.lastName && values.designation + && values.userName && values.phoneNumber && values.email)) + ? 'grey' : '#014d88', color: '#fff' }} > {!saving ? ( Save diff --git a/starter-module/src/main/webapp/jsx/components/charts/BarGraph.js b/starter-module/src/main/webapp/jsx/components/charts/BarGraph.js new file mode 100644 index 00000000..0d50cb34 --- /dev/null +++ b/starter-module/src/main/webapp/jsx/components/charts/BarGraph.js @@ -0,0 +1,23 @@ +import React from "react"; +import Highcharts from "highcharts"; +import HighchartsReact from "highcharts-react-official"; + +const BarGraph = ({ chartData }) => { + + if (!chartData || !chartData.series) { + return ( +
+ Invalid chart data +
+ ); + } + + + return ( +
+ +
+ ); +}; + +export default BarGraph; \ No newline at end of file diff --git a/starter-module/src/main/webapp/jsx/components/charts/LineGraph.js b/starter-module/src/main/webapp/jsx/components/charts/LineGraph.js index 7c97651a..8499f047 100644 --- a/starter-module/src/main/webapp/jsx/components/charts/LineGraph.js +++ b/starter-module/src/main/webapp/jsx/components/charts/LineGraph.js @@ -1,66 +1,21 @@ -import React, { useState, useEffect } from "react"; +import React from "react"; import Highcharts from "highcharts"; import HighchartsReact from "highcharts-react-official"; -import { url as baseUrl, url, token } from "../../../api"; -import axios from "axios"; -const LineGraph = ({ LineGraphData, title, xName, yName }) => { - const seriesData = { - male: LineGraphData.map((item) => [item.year, item.male]), - female: LineGraphData.map((item) => [item.year, item.female]), - }; +const LineGraph = ({ chartData }) => { - const options = { - chart: { - type: "line", - }, - title: { - text: title, - style: { - fontSize: "18px", - }, - }, - xAxis: { - title: { - text: xName, - style: { - fontSize: "14px", - }, - }, - labels: { - style: { - fontSize: "14px", - }, - }, - categories: LineGraphData.map((item) => item.year), - }, - yAxis: { - title: { - text: yName, - style: { - fontSize: "14px", - }, - }, - labels: { - style: { - fontSize: "14px", - }, - }, - }, - series: [ - { name: "Female", data: seriesData.female }, - { name: "Male", data: seriesData.male }, - ], - legend: { - itemStyle: { - fontSize: "14px", - }, - }, - }; + if (!chartData || !chartData.series) { + return ( +
+ Invalid chart data +
+ ); + } + return (
- +
); }; diff --git a/starter-module/src/main/webapp/jsx/components/charts/Pie.js b/starter-module/src/main/webapp/jsx/components/charts/Pie.js index 55944655..0df275ac 100644 --- a/starter-module/src/main/webapp/jsx/components/charts/Pie.js +++ b/starter-module/src/main/webapp/jsx/components/charts/Pie.js @@ -1,44 +1,26 @@ -import React, { useState, useEffect } from "react"; +import React from "react"; import Highcharts from "highcharts"; import HighchartsReact from "highcharts-react-official"; -import { url as baseUrl, url, token } from "../../../api"; -import axios from "axios"; - -const Pie = ({ plotData, title, seriesName }) => { - const options = { - chart: { - type: "pie", - }, - title: { - text: title, - }, - plotOptions: { - pie: { - dataLabels: { - style: { - fontSize: "14px", - }, - }, - }, - }, - legend: { - itemStyle: { - fontSize: "14px", - }, - }, - series: [ - { - name: seriesName, - data: plotData, - }, - ], - }; + +const Pie = ({ chartData }) => { + + if (!chartData || !chartData.series) { + return ( +
+ Invalid chart data +
+ ); + } + return (
- +
); }; export default Pie; + + + diff --git a/starter-module/src/main/webapp/jsx/index.js b/starter-module/src/main/webapp/jsx/index.js index 05f094e1..6a6e3a41 100644 --- a/starter-module/src/main/webapp/jsx/index.js +++ b/starter-module/src/main/webapp/jsx/index.js @@ -54,6 +54,7 @@ import AddFacility from "./components/FaciltyConfig/AddFacility"; import FacilitySetup from "./pages/FacilitySetup"; import WebLog from "./components/weblog/WebLog"; import Unauthorised from "./components/utils/UnauthorisedPage"; +import ChartConfigPage from "./components/ChartConfig/ChartConfigPage"; const Markup = () => { const [user, setUser] = useState(null); @@ -100,6 +101,7 @@ const Markup = () => { { url: "biometrics", component: BiometricList }, { url: "facility", component: FacilitiesList }, { url: "facility-config", component: AddFacility }, + { url: "chart-config", component: ChartConfigPage }, { url: "weblog", component: WebLog }, { url: "unauthorised", component: Unauthorised }, ]; @@ -153,9 +155,8 @@ const Markup = () => { <>
{!pagePath &&