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Bugfix to ArchiveReadsetsAction Release Branching #3345: Commit 9201aaf pushed by bbimber
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Bugfix to SequenceAnalysisMaintenanceTask Release Branching #3344: Commit 238cf5f pushed by bbimber
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Properly drop constraint Release Branching #3343: Commit 7c6b6d1 pushed by bbimber
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Debug SequenceAnalysisMaintenanceTask Release Branching #3342: Commit 1d5c271 pushed by bbimber
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Increase logging in SequenceAnalysisMaintenanceTask Release Branching #3341: Commit aeba6ad pushed by bbimber
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Bump fast-uri in /jbrowse in the npm_and_yarn group across 1 director… Release Branching #3340: Commit aac7980 pushed by bbimber
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Bump the npm_and_yarn group across 1 directory with 3 updates (#419) Release Branching #3339: Commit 5bf7883 pushed by bbimber
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Bump react-router-dom from 6.30.4 to 6.30.6 in /jbrowse (#420) Release Branching #3338: Commit 2c48fc5 pushed by bbimber
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Bugfix to readset permission check Release Branching #3337: Commit 11629bd pushed by bbimber
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Only use samtools merge when the inputs are sorted Release Branching #3336: Commit 223b851 pushed by bbimber
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Try to reduce I/O in SequenceAnalysisMaintenanceTask Release Branching #3335: Commit fcec9d9 pushed by bbimber
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Try to reduce I/O in SequenceAnalysisMaintenanceTask Release Branching #3334: Commit fcec9d9 pushed by bbimber
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Bugfix to samtools merge Release Branching #3333: Commit 303bc6d pushed by bbimber
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Update samtools merge argument order Release Branching #3332: Commit ed67eec pushed by bbimber
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Update samtools merge argument order Release Branching #3331: Commit ed67eec pushed by bbimber
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Prefer samtools merge over picard for speed Release Branching #3330: Commit ba788cc pushed by bbimber
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Support RecoverUnassignedCells() Release Branching #3329: Commit 49b17e8 pushed by bbimber
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Fix HTML Release Branching #3328: Commit 6843559 pushed by bbimber
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Bugfix to WhatsHapStep Release Branching #3327: Commit 00505ae pushed by bbimber
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Expand the workaround for birth_condition Release Branching #3326: Commit bb4a7bf pushed by bbimber
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Update gitignore Release Branching #3325: Commit 393d7f8 pushed by bbimber
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Try Apache-CLI to parse cluster commands Release Branching #3324: Commit 0bdc433 pushed by bbimber
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Revert switch to LabKeyProcessBuilder Release Branching #3323: Commit 86fa3d7 pushed by bbimber
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Fix security issues flagged by Claude (#418) Release Branching #3322: Commit e5e2350 pushed by bbimber
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Declare the primary genome in pipeline jobs rather than infer it (#417) Release Branching #3321: Commit 9be9d9a pushed by bbimber
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