Sync ESM model sources for OSS FoldBench evaluation - #5
Draft
ebetica wants to merge 3 commits into
Draft
Conversation
Co-Authored-By: OpenAI Codex <noreply@openai.com>
Co-Authored-By: OpenAI Codex <noreply@openai.com>
Co-Authored-By: OpenAI Codex <noreply@openai.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
What does this PR do?
Syncs generated ESMC and ESMFold2 sources for the OSS-only FoldBench 10r evaluation. The follow-up adds optional confidence-head sample chunking, preserving all outputs while reducing peak memory for long assemblies.
Validation:
uvx ruff check src/transformers/models/esmfold2/modeling_esmfold2.pypassed.5e93c9a06completed 92 Pro and 105 Fast long-target rescues with zero immutable-environment errors/OOMs.🤖 Sent by a robot