Skip to content

Sync ESM model sources for OSS FoldBench evaluation - #5

Draft
ebetica wants to merge 3 commits into
mainfrom
zlin/oss-foldbench-10r-20260814
Draft

Sync ESM model sources for OSS FoldBench evaluation#5
ebetica wants to merge 3 commits into
mainfrom
zlin/oss-foldbench-10r-20260814

Conversation

@ebetica

@ebetica ebetica commented Aug 14, 2026

Copy link
Copy Markdown
Collaborator

What does this PR do?

Syncs generated ESMC and ESMFold2 sources for the OSS-only FoldBench 10r evaluation. The follow-up adds optional confidence-head sample chunking, preserving all outputs while reducing peak memory for long assemblies.

Validation:

  • uvx ruff check src/transformers/models/esmfold2/modeling_esmfold2.py passed.
  • Clean pinned public imports and H100 Pro/Fast smoke folds passed.
  • Commit 5e93c9a06 completed 92 Pro and 105 Fast long-target rescues with zero immutable-environment errors/OOMs.
  • Final evaluation reached 351/351 targets and 56,250 OST rows/model.

🤖 Sent by a robot

recurse-agent and others added 3 commits August 14, 2026 20:22
Co-Authored-By: OpenAI Codex <noreply@openai.com>
Co-Authored-By: OpenAI Codex <noreply@openai.com>
Co-Authored-By: OpenAI Codex <noreply@openai.com>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant