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@CDCgov

Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S. No PII or PHI permitted
README.md

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain.

If you would like to create a new project, please fill out an issue on https://github.com/cdcgov/template logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

No PII/PHI permitted for hosting in this environment.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 25 35

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    41 50

Repositories

Showing 10 of 571 repositories
  • mycogene-nf Public
    CDCgov/mycogene-nf's past year of commit activity
    Nextflow 1 Apache-2.0 0 0 0 Updated Sep 18, 2026
  • dibbs-ecr-diff Public
    CDCgov/dibbs-ecr-diff's past year of commit activity
    Python 1 Apache-2.0 0 14 5 Updated Sep 17, 2026
  • phylophoenix Public

    🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.

    CDCgov/phylophoenix's past year of commit activity
    Python 12 Apache-2.0 1 6 1 Updated Sep 17, 2026
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix's past year of commit activity
    Python 112 Apache-2.0 41 13 1 Updated Sep 17, 2026
  • PyRenew Public

    Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.

    CDCgov/PyRenew's past year of commit activity
    Python 29 Apache-2.0 9 64 11 Updated Sep 17, 2026
  • stimulant_opioid_algorithm_medical_codes_R Public
    CDCgov/stimulant_opioid_algorithm_medical_codes_R's past year of commit activity
    HTML 4 Apache-2.0 3 0 0 Updated Sep 18, 2026
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes's past year of commit activity
    Python 8 8 0 0 Updated Sep 17, 2026
  • cfa-stf-routine-forecasting Public

    Models and infrastructure for routine forecasting of respiratory disease burden

    CDCgov/cfa-stf-routine-forecasting's past year of commit activity
    Python 16 Apache-2.0 4 24 2 Updated Sep 17, 2026
  • dibbs-ecr-viewer Public

    DIBBS eCR Viewer

    CDCgov/dibbs-ecr-viewer's past year of commit activity
    HTML 14 CC0-1.0 5 105 6 Updated Sep 17, 2026
  • polkapox Public
    CDCgov/polkapox's past year of commit activity
    Python 12 Apache-2.0 8 14 5 Updated Sep 17, 2026
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