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@GfellerLab

Cancer Immune Recognition Lab

Lab from David Gfeller from the University of Lausanne

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  1. SuperCell SuperCell Public

    Coarse-graining of large single-cell RNA-seq data into metacells

    R 110 15

  2. EPIC EPIC Public

    Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

    R 87 22

  3. MixMHC2pred MixMHC2pred Public

    HLA-II ligand predictor.

    C++ 51 12

  4. MixMHCpred MixMHCpred Public

    HLA-I ligand predictor

    Python 47 11

  5. MixTCRpred MixTCRpred Public

    Predictor of TCR-epitope interactions

    Python 39 10

  6. PRIME PRIME Public

    PRedictor of IMmunogenic Epitopes

    C++ 35 5

Repositories

Showing 10 of 26 repositories
  • MixTCRviz Public

    Visualisation tool for repertoires of epitope-specific TCRs

    GfellerLab/MixTCRviz's past year of commit activity
    R 0 0 0 0 Updated Sep 10, 2026
  • SuperCellMultiomicsAnalyses Public

    Analysis of single-cell multiomics datasets using metacell tools

    GfellerLab/SuperCellMultiomicsAnalyses's past year of commit activity
    0 MIT 0 0 0 Updated Sep 7, 2026
  • MixMHC2pred Public

    HLA-II ligand predictor.

    GfellerLab/MixMHC2pred's past year of commit activity
    C++ 51 12 0 0 Updated Aug 25, 2026
  • EPIC-ATAC Public
    GfellerLab/EPIC-ATAC's past year of commit activity
    R 1 0 1 0 Updated Jul 27, 2026
  • MixTCRclean Public

    Tool to detect putative issues in TCR sequences data

    GfellerLab/MixTCRclean's past year of commit activity
    R 0 0 0 0 Updated Jul 22, 2026
  • TEMPO Public

    TCR-epitope motif-based interaction predictor

    GfellerLab/TEMPO's past year of commit activity
    2 0 1 0 Updated Jun 24, 2026
  • ggseqlogo Public Forked from omarwagih/ggseqlogo

    Publication-quality sequence logos in R

    GfellerLab/ggseqlogo's past year of commit activity
    R 1 32 0 0 Updated Apr 27, 2026
  • SuperCell Public

    Coarse-graining of large single-cell RNA-seq data into metacells

    GfellerLab/SuperCell's past year of commit activity
    R 110 GPL-3.0 15 5 2 Updated Apr 16, 2026
  • MixMHCpred Public

    HLA-I ligand predictor

    GfellerLab/MixMHCpred's past year of commit activity
    Python 47 11 2 0 Updated Mar 19, 2026
  • SuperCellMultiomicsHTAN Public
    GfellerLab/SuperCellMultiomicsHTAN's past year of commit activity
    R 0 0 0 0 Updated Feb 12, 2026
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