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fix(modkit): patched modkit 0.6.4 for PacBio 5mC+5hmC reads, 5mC-CpG pileup defaults and --modkit_phased option - #188

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fix(modkit): patched modkit 0.6.4 for PacBio 5mC+5hmC reads, 5mC-CpG pileup defaults and --modkit_phased option#188
ljwharbers wants to merge 9 commits into
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fix/modkit-pacbio-container

modkit: pull the patched image as a native SIF under singularity/appt…

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