cellpose-runner

Run CellPose with formalized configuration logging and visualization.

Installation

pip install git+https://github.com/JaneliaSciComp/cellpose_runner

This project uses uv and just. To set up a development environment:

git clone https://github.com/JaneliaSciComp/cellpose_runner
cd cellpose_runner
just install

See CONTRIBUTING.md for more, or run just to list all available recipes.

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
.github		.github
scripts		scripts
src/cellpose_runner		src/cellpose_runner
tests		tests
.gitattributes		.gitattributes
.gitignore		.gitignore
.pre-commit-config.yaml		.pre-commit-config.yaml
CONTRIBUTING.md		CONTRIBUTING.md
LICENSE		LICENSE
README.md		README.md
justfile		justfile
mkdocs.yml		mkdocs.yml
pyproject.toml		pyproject.toml
uv.lock		uv.lock