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Tighten birth and conception entry and drop legacy nbri_ehr tables #20

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Tighten birth and conception entry and drop legacy nbri_ehr tables #20

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b64a02d
Drop legacy nbri_ehr tables and tighten birth and conception entry
labkey-martyp Aug 9, 2026
8f8c7a9
Derive demographics birth/death from the birth and death records
labkey-martyp Aug 10, 2026
66014ba
Cover the demographics birth/death sync and align the sample data
labkey-martyp Aug 10, 2026
a968bc3
Merge remote-tracking branch 'ORIGIN/release26.7-SNAPSHOT' into 26.7_…
labkey-martyp Aug 10, 2026
c44e560
Record a social code on births and arrivals
labkey-martyp Aug 17, 2026
9bc7c21
Hide the project assignment end date on data entry forms
labkey-martyp Aug 17, 2026
ba91918
Rename the Bulk Deaths form to Deaths
labkey-martyp Aug 17, 2026
9466b30
Hide the end date on the animal group assignment form
labkey-martyp Aug 17, 2026
c16c670
Add a group assignment section to the arrival and birth forms
labkey-martyp Aug 17, 2026
b472468
Fix metadata field key casing that shadowed shared EHR defaults
labkey-martyp Aug 18, 2026
96037c3
Block death entry for animals with a non-final demographics record
labkey-martyp Aug 18, 2026
cafb3b8
Scope the demographics QC state check to inserts
labkey-martyp Aug 18, 2026
d2150b6
Clarify demographics birth date ownership comments
labkey-martyp Aug 18, 2026
9e661aa
Fix demographics sync no-op from Rhino NativeArray isEmpty()
labkey-martyp Aug 18, 2026
0b3ea90
Anchor arrival form field inserts to named neighbors
labkey-martyp Aug 18, 2026
ca02294
Record a performer on animal group memberships
labkey-martyp Aug 18, 2026
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3 changes: 0 additions & 3 deletions nbri_ehr/resources/data/birth_condition.tsv
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3 changes: 1 addition & 2 deletions nbri_ehr/resources/data/editable_lookups.tsv
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Expand Up @@ -18,7 +18,6 @@ ehr_lookups bcs_score Clinical Body Condition Score Clinical observation fixed v
ehr_lookups behavior_abnormality Clinical Behavior Abnormality Clinical observation fixed values.
ehr_lookups behavior_mgmt_codes Behavior Behavior Management Codes Behavior observation fixed values.
ehr_lookups behavior_types Behavior Behavior Types Behavior observation fixed values.
ehr_lookups birth_condition Colony Management Birth Condition Birth condition values.
ehr_lookups blood_draw_reason Clinical Blood Draw Reason Used in blood draw datasets.
ehr_lookups blood_draw_tube_type Clinical Blood Draw Tube Type Used in blood draw datasets.
ehr_lookups blood_sample_type Clinical Blood Sample Types Used in blood draw datasets.
Expand Down Expand Up @@ -68,7 +67,6 @@ ehr_lookups geographic_origins Colony Management Geographic Origins Used in demo
ehr_lookups hernia_types Clinical Hernia Types Clinical observation fixed values.
ehr_lookups housing_reason Housing Housing Move Reason Used in housing dataset for location transfers.
ehr_lookups hyd_score Clinical Hydration Score Clinical observation fixed values.
ehr_lookups id_history_type Colony Management Id History Type
ehr_lookups incision_score Clinical Incision Status Clinical observation fixed values.
ehr_lookups indoor_outdoor Colony Management Indoor/Outdoor Cage details
ehr_lookups keyword Clinical Keyword Clinical observation fixed values.
Expand Down Expand Up @@ -117,6 +115,7 @@ ehr_lookups respiratory_observations Clinical Respiratory Observations Used in c
ehr_lookups routes Clinical Treatment Routes Used in drug and treatment datasets.
ehr_lookups sib_score Behavior SIB Score Behavior observation fixed values.
ehr_lookups skin_problem Clinical Skin Problems Clinical observation fixed values.
ehr_lookups social_code Colony Management Social Code Rearing and acquisition codes recorded once per animal at birth or arrival.
ehr_lookups source Colony Management Source
ehr_lookups species Colony Management Species
ehr_lookups snomed Research Treatments List of animal treatments.
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6 changes: 0 additions & 6 deletions nbri_ehr/resources/data/id_history_type.tsv
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3 changes: 1 addition & 2 deletions nbri_ehr/resources/data/lookup_sets.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,6 @@ bcs_score BCS Store value title
behavior_abnormality Behavior Abnormality value
behavior_mgmt_codes Behavior Management Codes value
behavior_types Behavior Types value
birth_condition Birth Condition value title
blood_draw_reason Blood Draw Reason value
blood_sample_type Blood Sample Types value
breeding_type Breeding Type value title
Expand Down Expand Up @@ -55,7 +54,6 @@ genitourinary_obs Genitourinary Observations value
hernia_types Hernia Types value
housing_reason Housing Reason value
hyd_score Hyd Score value
id_history_type Id History Type value title
incision_score Incision Status value
indoor_outdoor Indoor/Outdoor value
keyword Keyword value title
Expand Down Expand Up @@ -102,6 +100,7 @@ req_order_type Req Order Type value title
respiratory_observations Respiratory Observations value title
sib_score SIB Score value
skin_problem Skin Problem value
social_code Social Code value title
status_codes Status Code Field Values value title
stool_score Stool Score value
stool_types Stool Types value
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4 changes: 1 addition & 3 deletions nbri_ehr/resources/data/lookupsManifest.tsv
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Expand Up @@ -18,7 +18,6 @@ bcs_score
behavior_abnormality
behavior_mgmt_codes
behavior_types
birth_condition
blood_draw_reason
blood_draw_tube_type
blood_sample_type
Expand Down Expand Up @@ -56,7 +55,6 @@ fecal_score
fecal_smear_score
feed_assess_types
flag_categories
flag_values
gastro_types
gender_codes
general_obs
Expand All @@ -66,7 +64,6 @@ geographic_origins
hernia_types
housing_reason
hyd_score
id_history_type
incision_score
indoor_outdoor
lameness
Expand Down Expand Up @@ -117,6 +114,7 @@ snomed
species
species_codes
skin_problem
social_code
status_codes
stool_score
stool_types
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3 changes: 1 addition & 2 deletions nbri_ehr/resources/data/lookupsManifestTest.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,6 @@ bcs_score
behavior_abnormality
behavior_mgmt_codes
behavior_types
birth_condition
blood_draw_reason
blood_draw_tube_type
blood_sample_type
Expand Down Expand Up @@ -66,7 +65,6 @@ geographic_origins
hernia_types
housing_reason
hyd_score
id_history_type
incision_score
indoor_outdoor
lameness
Expand Down Expand Up @@ -114,6 +112,7 @@ respiratory_observations
routes
sib_score
skin_problem
social_code
source
snomed
species
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6 changes: 6 additions & 0 deletions nbri_ehr/resources/data/social_code.tsv
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@@ -0,0 +1,6 @@
value title
AC Acquired
CC Corn crib rearing/living
FC Field cage rearing/living
MR Mother-rearing (for indoors)
NR Nursery-rearing
48 changes: 0 additions & 48 deletions nbri_ehr/resources/queries/nbri_ehr/Account.query.xml
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86 changes: 0 additions & 86 deletions nbri_ehr/resources/queries/nbri_ehr/AnimalDelivery.query.xml
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36 changes: 0 additions & 36 deletions nbri_ehr/resources/queries/nbri_ehr/AnimalDeliveryEsig.query.xml
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