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RuleWorld

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  1. bionetgen bionetgen Public

    Rule-based modeling framework

    C++ 70 28

  2. nfsim nfsim Public

    Forked from msneddon/nfsim

    A general-purpose, stochastic, biochemical reaction simulator for large reaction networks

    C++ 16 11

  3. BNGTutorial BNGTutorial Public

    Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

    15 3

  4. rulebender rulebender Public

    Rule-Based Modeling and Simulation Gui

    C 12 7

  5. PyBioNetGen PyBioNetGen Public

    A simple CLI for BioNetGen

    Python 7 6

  6. ptempest ptempest Public

    PTempEst: Parallel Tempering for Estimation

    MATLAB 5 6

Repositories

Showing 10 of 26 repositories
  • BNG3 Public
    RuleWorld/BNG3's past year of commit activity
    C++ 0 MIT 0 0 2 Updated Sep 11, 2026
  • bngplayground Public
    RuleWorld/bngplayground's past year of commit activity
    TypeScript 2 MIT 6 0 2 Updated Sep 11, 2026
  • bionetgen Public

    Rule-based modeling framework

    RuleWorld/bionetgen's past year of commit activity
    C++ 70 MIT 28 87 0 Updated Sep 11, 2026
  • PyBioNetGen Public

    A simple CLI for BioNetGen

    RuleWorld/PyBioNetGen's past year of commit activity
    Python 7 MIT 6 23 0 Updated Sep 4, 2026
  • nfsim Public Forked from msneddon/nfsim

    A general-purpose, stochastic, biochemical reaction simulator for large reaction networks

    RuleWorld/nfsim's past year of commit activity
    C++ 16 MIT 20 6 0 Updated Sep 1, 2026
  • SIAMLS26 Public

    Materials and setup instructions for the SIAM LS26 minitutorial on rule-based modeling with BioNetGen and NFsim.

    RuleWorld/SIAMLS26's past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jul 8, 2026
  • RuleHub Public

    A repository of rule-based models. Could this be the start of something great?

    RuleWorld/RuleHub's past year of commit activity
    JavaScript 2 MIT 7 1 1 Updated Jun 24, 2026
  • ptempest Public

    PTempEst: Parallel Tempering for Estimation

    RuleWorld/ptempest's past year of commit activity
    MATLAB 5 GPL-3.0 6 0 0 Updated May 12, 2026
  • webng Public Forked from ASinanSaglam/webng

    A set of tools to simplify the weighted ensemble sampling of BioNetGen rule-based simulations.

    RuleWorld/webng's past year of commit activity
    Jupyter Notebook 0 4 5 0 Updated Apr 8, 2026
  • BNGTutorial Public

    Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.

    RuleWorld/BNGTutorial's past year of commit activity
    15 3 0 0 Updated May 30, 2023
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