Update MEmilio paper citation

README.md

@@ -9,11 +9,11 @@ MEmilio implements various models for infectious disease dynamics, from simple c
 
 If you use MEmilio, please cite our work
 
-- Bicker J, Gerstein C, Kerkmann D, Korf S, Schmieding R, Wendler A, Zunker H et al. (2026)  *MEmilio - A high performance Modular Epidemics Simulation software for multi-scale and comparative simulations of infectious disease dynamics*. Submitted for publication. https://doi.org/10.48550/arXiv.2602.11381
+- Bicker J, Gerstein C, Kerkmann D, Korf S, Schmieding R, Wendler A, Zunker H et al. (2026)  *MEmilio: a high performance Modular Epidemics Simulation software for multi-scale and comparative simulations of infectious disease dynamics*. *Scientific Reports* 16, 26950. https://doi.org/10.1038/s41598-026-66481-6
 
 and, in particular, for
 
-- Ordinary differential equation-based (ODE) and Graph-ODE models: Zunker H, Schmieding R, Hasenauer J, Kühn M J (2026). *Efficient numerical computation of traveler states in explicit mobility-based metapopulation models: Mathematical theory and application to epidemics*. arXiv. https://doi.org/10.48550/arXiv.2603.11275
+- Ordinary differential equation-based (ODE) and Graph-ODE models: Zunker H, Schmieding R, Hasenauer J, Kühn MJ. (2026). *Efficient numerical computation of traveler states in explicit mobility-based metapopulation models: Mathematical theory and application to epidemics*. *Mathematics and Computers in Simulation*. https://doi.org/10.1016/j.matcom.2026.08.029
 - Integro-differential equation-based (IDE) models: Wendler A, Plötzke L, Tritzschak H, Kühn MJ. (2026). *A nonstandard numerical scheme for a novel SECIR integro differential equation-based model with nonexponentially distributed stay times*. *Applied Mathematics and Computation* 509: 129636. https://doi.org/10.1016/j.amc.2025.129636
 - Agent-based models (ABMs): Kerkmann D, Korf S, Nguyen K, Abele D, Schengen A, et al. (2025). *Agent-based modeling for realistic reproduction of human mobility and contact behavior to evaluate test and isolation strategies in epidemic infectious disease spread*. *Computers in Biology and Medicine* 193: 110269. https://doi.org/10.1016/j.compbiomed.2025.110269
 - Hybrid agent-metapopulation-based models: Bicker J, Schmieding R, Meyer-Hermann M, Kühn MJ. (2025). *Hybrid metapopulation agent-based epidemiological models for efficient insight on the individual scale: A contribution to green computing*. *Infectious Disease Modelling* 10(2): 571-590. https://doi.org/10.1016/j.idm.2024.12.015

docs/source/literature.rst

@@ -1,6 +1,6 @@
-.. |MEmilio_citation| replace:: Bicker J, Gerstein C, Kerkmann D, Korf S, Schmieding R, Wendler A, Zunker H, Abele D, Betz M, Nguyen K, Plötzke L, Volmer K, SchmidtA,  Waßmuth N, Lenz P, Richter D, Tritzschak H, Hannemann-Tamas R, Litz J, Johannssen P, Borges M, Jungklaus A, Heger M, Lange A, Kluth E, Rack K, Wieland V, Arruda J, Binder S, Klitz M, Siggel M, Dahmen M, Basermann A, Meyer-Hermann M, Hasenauer J, Kühn MJ. (2026). *MEmilio -- A high performance Modular EpideMIcs simuLatIOn software for multi-scale and comparative simulations of infectious disease dynamics*. Submitted for publication. |MEmilio_DOI|_
-.. |MEmilio_DOI| replace:: DOI:10.48550/arXiv.2602.11381
-.. _MEmilio_DOI: https://doi.org/10.48550/arXiv.2602.11381
+.. |MEmilio_citation| replace:: Bicker J, Gerstein C, Kerkmann D, Korf S, Schmieding R, Wendler A, Zunker H, Abele D, Betz M, Nguyen K, Plötzke L, Volmer K, SchmidtA,  Waßmuth N, Lenz P, Richter D, Tritzschak H, Hannemann-Tamas R, Litz J, Johannssen P, Borges M, Jungklaus A, Heger M, Lange A, Kluth E, Rack K, Wieland V, Arruda J, Binder S, Klitz M, Siggel M, Dahmen M, Basermann A, Meyer-Hermann M, Hasenauer J, Kühn MJ. (2026). *MEmilio: a high performance Modular EpideMIcs simuLatIOn software for multi-scale and comparative simulations of infectious disease dynamics*. *Scientific Reports* 16, 26950. |MEmilio_DOI|_
+.. |MEmilio_DOI| replace:: DOI:10.1038/s41598-026-66481-6
+.. _MEmilio_DOI: https://doi.org/10.1038/s41598-026-66481-6
 
 .. |Novel_travel_time_aware_metapopulation_models| replace:: Zunker H, Schmieding R, Kerkmann D, Schengen A, Diexer S, Mikolajczyk R, Meyer-Hermann M, Kühn MJ. (2024). *Novel travel time aware metapopulation models and multi-layer waning immunity for late-phase epidemic and endemic scenarios*. *PLOS Computational Biology* 20(12): e1012630. |Novel_travel_time_aware_metapopulation_models_DOI|_
 .. |Novel_travel_time_aware_metapopulation_models_DOI| replace:: DOI:10.1371/journal.pcbi.1012630 
@@ -66,7 +66,7 @@
 .. |Missing_Transmission_Chains_DOI| replace:: DOI:10.1016/j.chaos.2026.118179
 .. _Missing_Transmission_Chains_DOI: https://doi.org/10.1016/j.chaos.2026.118179
 
-.. |Traveler_estimation| replace:: Zunker H, Schmieding R, Hasenauer J, Kühn M J (2026). *Efficient numerical computation of traveler states in explicit mobility-based metapopulation models: Mathematical theory and application to epidemics*. arXiv. |Traveler_estimation_DOI|_
-.. |Traveler_estimation_DOI| replace:: DOI:10.1016/10.48550/arXiv.2603.11275
-.. _Traveler_estimation_DOI: https://doi.org/10.48550/arXiv.2603.11275
+.. |Traveler_estimation| replace:: Zunker H, Schmieding R, Hasenauer J, Kühn M J (2026). *Efficient numerical computation of traveler states in explicit mobility-based metapopulation models: Mathematical theory and application to epidemics*. *Mathematics and Computers in Simulation*. |Traveler_estimation_DOI|_
+.. |Traveler_estimation_DOI| replace:: DOI:10.1016/j.matcom.2026.08.029
+.. _Traveler_estimation_DOI: https://doi.org/10.1016/j.matcom.2026.08.029