TRON Bioinformatics

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1. EasyFuse EasyFuse Public

   EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.

   Python 69 16

2. seq2HLA seq2HLA Public

   In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA allel…

   Python 52 9

3. neofox neofox Public

   Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors

   Python 34 6

4. tronflow-mutect2 tronflow-mutect2 Public

   Nextflow pipeline for Mutect2 somatic variant calling best practices

   Nextflow 23 4

5. covigator-ngs-pipeline covigator-ngs-pipeline Public

   A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.

   Nextflow 20 8

6. splice2neo splice2neo Public

   R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes

   R 15 2