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Nextstrain

Real-time tracking of pathogen evolution

232 followers
https://nextstrain.org
@nextstrain
@nextstrain@mstdn.science

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ncov ncov Public

Nextstrain build for SARS-CoV-2

Python 1.4k 408
augur augur Public

Pipeline components for real-time phylodynamic analysis

Python 277 134
auspice auspice Public

Web app for visualizing pathogen evolution

JavaScript 312 171

Repositories

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Showing 10 of 103 repositories

nextstrain.org Public
The Nextstrain website

nextstrain/nextstrain.org's past year of commit activity

JavaScript 96 AGPL-3.0 54 69 14 Updated Aug 17, 2026
docs.nextstrain.org Public
Umbrella documentation project for Nextstrain

nextstrain/docs.nextstrain.org's past year of commit activity

Python 18 13 26 3 Updated Aug 17, 2026
auspice.us Public

nextstrain/auspice.us's past year of commit activity

JavaScript 13 8 4 1 Updated Aug 16, 2026
newcastle-disease-virus Public

nextstrain/newcastle-disease-virus's past year of commit activity

Python 0 0 0 0 Updated Aug 15, 2026
nextclade_data Public
Datasets for https://github.com/nextstrain/nextclade

nextstrain/nextclade_data's past year of commit activity

Python 47 43 10 23 Updated Aug 15, 2026
augur Public
Pipeline components for real-time phylodynamic analysis

nextstrain/augur's past year of commit activity

Python 277 AGPL-3.0 134 230 (1 issue needs help) 36 Updated Aug 15, 2026
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

nextstrain/seasonal-flu's past year of commit activity

Python 63 32 28 6 Updated Aug 15, 2026
bioconda-recipes Public Forked from bioconda/bioconda-recipes
Fork for maintaining Nextstrain-related recipes and submitting PRs upstream.

nextstrain/bioconda-recipes's past year of commit activity

Shell 0 4,072 3 0 Updated Aug 14, 2026
docker-base Public
Docker image build for nextstrain/base

nextstrain/docker-base's past year of commit activity

Shell 12 8 7 2 Updated Aug 14, 2026
hantavirus Public
repository for workflows for various orthohantavirus builds

nextstrain/hantavirus's past year of commit activity

Python 0 0 0 0 Updated Aug 13, 2026

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