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@pangenome

pangenome

graphical pangenomic methods

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  1. pggb pggb Public

    the pangenome graph builder

    Shell 515 50

  2. impg impg Public

    implicit pangenome graph

    Rust 113 16

  3. odgi odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    C++ 250 50

  4. smoothxg smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    C++ 67 11

Repositories

Showing 10 of 91 repositories
  • sxgc Public

    sxgc — s-χ-GC: suffixient-χ (suffixient-array) indexing of AGC genome collections, with name-space mapping and banded builds

    pangenome/sxgc's past year of commit activity
    Makefile 0 MIT 0 0 0 Updated Sep 18, 2026
  • suffixient-array Public Forked from regindex/suffixient-array

    Implementation of the Suffixient-Array index

    pangenome/suffixient-array's past year of commit activity
    C++ 0 MIT 1 0 0 Updated Sep 18, 2026
  • odgi Public

    Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

    pangenome/odgi's past year of commit activity
    C++ 250 MIT 50 35 (1 issue needs help) 4 Updated Sep 16, 2026
  • impg Public

    implicit pangenome graph

    pangenome/impg's past year of commit activity
    Rust 113 MIT 16 3 11 Updated Sep 15, 2026
  • HPRCv2 Public

    pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2

    pangenome/HPRCv2's past year of commit activity
    R 24 MIT 1 0 1 Updated Sep 9, 2026
  • smoothxg Public

    linearize and simplify variation graphs using blocked partial order alignment

    pangenome/smoothxg's past year of commit activity
    C++ 67 11 4 1 Updated Aug 21, 2026
  • phrs Public

    Genome-wide pseudo-homologous regions (PHRs) — lab notebook for Nature submission with HPRCv2

    pangenome/phrs's past year of commit activity
    HTML 2 0 0 0 Updated Aug 14, 2026
  • seqwish Public

    alignment to variation graph inducer

    pangenome/seqwish's past year of commit activity
    Rust 165 MIT 22 11 1 Updated Jul 29, 2026
  • sweepga Public

    plane sweep filtering genome alignments

    pangenome/sweepga's past year of commit activity
    Rust 24 MIT 1 1 1 Updated Jul 25, 2026
  • wfmash-rs Public

    Rust bindings for wfmash whole-genome aligner

    pangenome/wfmash-rs's past year of commit activity
    Rust 1 0 0 0 Updated Jul 25, 2026
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