cell2location

Regularized scVI for complex multiome single-cell/nucleus datasets: ambient RNA correction, dispersion prior, and batch-free decoder act as structural inductive biases that make large-architecture VAEs well-behaved without per-dataset tuning.

Multimodal spatial transcriptomics and epigenomic analysis of prostate cancer — MSc Bioinformatics thesis, KU Leuven 2026

Spatial transcriptomics analysis of macrophages in chronic kidney disease (CKD): cell2location deconvolution, CellChat cell-cell communication, differential expression and co-expression analysis (Python/R).

Mapping single-cell transcriptomes in the intratumoral and associated territories of kidney cancer文章代码 空间转录组与侵袭前沿；NMF;Nichnet;cell2loaction;inferCNV，聚类树，OR检验

TFM · Cartografía celular y espacial de una firma de remodelación de la ECM en PDAC: atlas de 58.994 células (Seurat v5) integrado con 13 secciones Visium (cell2location)