PYthon Models for AgeNt-based resource GAthering (pyMANGA): Describing vegetation population dynamics based on first principles
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Jun 26, 2026 - Python
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individual-based-model
Here are 8 public repositories matching this topic...
SINS - Simulate INdividuals in Space
simulation computational-biology population-genetics spatially-explicit-models forward-in-time-simulation individual-based-model
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Oct 14, 2024 - Java
A workshop covering the calibration of agent-based models.
calibration agent-based-modeling sensitivity-analysis netlogo mesa individual-based-modelling agent-based-framework approximate-bayesian-computation agent-based-simulation blackbox-optimization latin-hypercube-sampling surrogate-models blackbox-optimizer agent-based-modelling likelihood-free-inference surrogate-model bayesian-calibration simulation-based-inference individual-based-model individual-based-modeling
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Sep 14, 2026 - Python
Model and code accompanying the paper "Shielding individuals at high risk of COVID-19: a micro-simulation study".
epidemiology covid-19 individual-based-model internally-displaced-people humanitarian-health epidemiological-modelling
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Mar 16, 2023 - R
Complete source code and intermediary files to accompany the manuscript published in Scientific Reports.
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Jan 22, 2023 - C++
Implementation of soft body interaction models (for multiple particles). Includes applications to (1) soil mechanics, (2) microbiology. Variants of the method: discrete element method, individual based model, molecular dynamics.
microbial-communities soil-mechanics discrete-element-method individual-based-model microbial-aggregates methanosarcina
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Jul 5, 2021 - C++
small-scale stochastic SCIR epidemics with crypticity and control. parameterised to Xylella
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Apr 3, 2025 - Python
Complete source code and intermediary files to accompany the manuscript.
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Jan 30, 2024 - C++
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