datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files
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Updated
Jul 8, 2024 - Jupyter Notebook
datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files
How fast can a coding agent p-hack? Measured: on known-zero data, realistic searches manufacture p<.05 on 33-97% of null draws, in ~1 second each. Instrumented specification-search engine + 11 Claude Code skills for econometric designs; every search leaves a verifiable ledger and an honest p-value. Research and teaching use only.
Blazing-fast multiverse data exploration 💨 — based on our Nature Energy 2025 publication
Topological Hyperparameter Evaluation Mapping Algorithm (Nature Energy 2025).
R and Stata package for reproducibility, replicability and robustness analysis using multiverse and specification-curve results.
Simple multiverse analysis simulations, visualizations and inference techniques.
Multiverse analysis of SNR and phase synchronization as predictors of sensorimotor BCI performance
Circuit-level interpretability evidence does not survive defensible analytic variation. Pre-registered multiverse over 15,840 specifications; the derived EU AI Act Annex IV claim flips across 73.2% of specification pairs. arXiv:2608.13754
How far does a conclusion about educational attainment move across modelling choices that are all individually defensible? A 48-specification sensitivity study of PISA 2022 UK mathematics outcomes.
Should they have passed? Evaluating shooting decisions from StatsBomb 360 freeze frames, and testing which analytical choices actually change the answer.
A preregistered, algorithm-agnostic matched-null test for cluster-count claims ("N types"), tried out on personality.
Garden of forking paths simulator. Hunt for p<0.05 in a null dataset, then see the whole multiverse of 1920 specifications
221 dengue outbreaks × 144 analysis choices = 33,152 model fits. Three-quarters of the variation in whether climate forcing is endorsed is analytical, not geographic — and most of that is an outbreak × analysis interaction no convention can remove.
Repo for the code and data used to perform our mini-multiverse analysis
This essay presents a clear and intuitive overview of the full Siamese Universe framework. It explains how a shared quantum vacuum, a minimal phase desynchronization, and CPT symmetry together generate matter, structure, and cosmic complexity. A causal narrative linking physical principles and observable signatures.
Causally disciplined multiverse analysis in R: candidate DAGs, valid-specification multiverses, within/between-DAG variance decomposition
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