mzml

Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis

A library for deisotoping and charge state deconvolution of complex mass spectra

Mass spectrometry data visualization

Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data

A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML

Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

MS File ToolBox - tools for parsing some mass-spectrometry related file formats (mzML, mzXML, pep.xml, prot.xml, etc.)

Create .mzML files through the R Console

Import/Export routines for MALDIquant

High-performance Rust + Python readers for mass spectrometry / proteomics raw data.

Read popular mass spectrometry formats

A tool for mass spectrometry data analysis.

Recalibrate Mass Spectrometry data in mzML format

📊 User-friendly mass spectrometry and chromatography data analysis app with native UI, graphing, quantification, MS/MS and data export capabilities

Java imzML (mass spectrometry imaging) and mzML (mass spectrometry) parser

Raw data and peaks list simulation for GC/LC-MS based data

A light weight and fast parser for reading mzML, mzXML and netCDF data files

Converts a Thermo .raw file with FAIMS scans into a series of .mzML files, creating one .mzML file for each FAIMS compensation voltage (CV) value.

C# reader/writer for mzIdentML files (.mzID). Also supports reading mzML files.