Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics

STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data

An R package providing tools for single-cell RNA-seq data analysis, enhancing existing methods with helper functions.

Repository contains information on Gene Updater

This project focuses on predicting maternal-fetal health outcomes, specifically early detection of preeclampsia, by learning transferable representations from cfRNA and placental transcriptomic data.

List of online databases and resources for Mycobacterium Tuberculosis

Beginner-friendly RNA-seq exploratory workflow in R using DESeq2, including PCA, differential expression analysis, MA plot, volcano plot and heatmap visualization.

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Data package for Rat liver RNA-seq data from SEQC Toxicogenomics project

R scripts for preprocessing, pathway scoring, Bayesian modeling, and Cox proportional hazards analyses applied to the SCAPeSCLC dataset, integrating GeoMx Cancer Transcriptome Atlas expression and survival outcomes in ES-SCLC patients treated with chemo-immunotherapy.

🧬 RNA-seq differential expression analysis of a methanotroph across a methane-oxygen counter gradient (Beals & Puri 2024).

Data from the manuscript: RNA-Seq reveals that mitochondrial genes and long non-coding RNAs may play important roles in the bivoltine generations of the non-social Neotropical bee Tetrapedia diversipes

Reproducible single-cell RNA-seq pipeline for human endometrial organoids to identify epithelial stem cell markers and characterize cellular states.

This repo contains the differential expression analysis .

Conversion of ensembl_id to gene name and gene ontology