ucsf

Linux command-line client to manage a UCSF VPN connection

Project for UCSF 265

The Official Wynton HPC User Website

This project builds and validates a CDI risk assessment model based on UCSF inpatient data

RSNA Bone Age Competition

This project transforms demographics, clinical scenario, and respiratory support data for patients hospitalized at UCSF into a daily snapshot of clinical severity stage for each patient. Ordinal scale adapted from WHO’s Clinical Progression Scale, which aims to capture patient clinical trajectory and resource usage over time.

A web application (Li Lab - UCSF) that takes gene expression fold changes as input and returns human transcription factors crucial to the experimental condition.

The UCSF Linux Toolbox

A UCSF theme for Quarto-with-reveal.js presentations.

Chrome Browser Extension: Open via UCSF

Create YAML files for rec-to-NWB Conversion

Python code related to networks from Daniel Himmelstein's PhD in the Sergio Baranzini Lab at UCSF

Physics&Chemistry Dissertation

This project imports and analyzes demographic and Covid staging data for COVID-19 patients hospitalized at UTSW

Example scripts that illustrate how to use the Wynton HPC Linux environment